ID FJ882108; SV 1; circular; genomic DNA; STD; VRL; 2688 BP. XX AC FJ882108; XX DT 06-DEC-2009 (Rel. 103, Created) DT 06-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Maize streak virus isolate MSV-A_ZA_Fer_D16-2008, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2688 RX DOI; 10.1099/vir.0.015537-0. RX PUBMED; 19692547. RA Harkins G.W., Martin D.P., Duffy S., Monjane A.L., Shepherd D.N., RA Windram O.P., Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., RA Flett B., Ramusi M., Rybicki E.P., Peterschmitt M., Varsani A.; RT "Dating the origins of the maize-adapted strain of maize streak virus, RT MSV-A"; RL J. Gen. Virol. 90(Pt 12):3066-3074(2009). XX RN [2] RP 1-2688 RA Harkins G.W., Martin D.P., Monjane A.L., Shepherd D.N., Windram O.P., RA Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., Flett B., Ramusi M., RA Rybicki E.P., Peterschmitt M., Varsani A.; RT ; RL Submitted (02-APR-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Cape Town, RL WP 7701, South Africa XX DR MD5; 33aabd5c8b3410e786ec3c3bf59b8d29. XX FH Key Location/Qualifiers FH FT source 1..2688 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_ZA_Fer_D16-2008" FT /mol_type="genomic DNA" FT /country="South Africa" FT /lat_lon="30.08 S 30.16 E" FT /collection_date="2008" FT /db_xref="taxon:10821" FT CDS 157..462 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D2E107" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:D2E107" FT /protein_id="ACZ04190.1" FT /translation="MDPQNSFFVQPRVPTAAPTSGGVSWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT CDS 473..1207 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:B6CZ91" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:B6CZ91" FT /protein_id="ACZ04191.1" FT /translation="MSTSKRKRGDDSNWNKRVPKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNTSWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1717..2535) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:D2E109" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2E109" FT /protein_id="ACZ04192.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEFPY FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSLSSHQMKDQESRASTSSAQQEPENLLGPEA" XX SQ Sequence 2688 BP; 690 A; 632 C; 683 G; 683 T; 0 other; taatattacc gcgccttctt ttcctgcgag ggcccggtag ggaccgagcg ctttgattta 60 aagcttggtc ctgctttgta tgatttatct aaagcagccc aatctaaaga aaccggtccc 120 gggcactata aattgcgtaa caagtgcgat tcattcatgg atccacagaa ctccttcttt 180 gtacagccgc gggtacccac agcagctccg acatccggag gagtgtcgtg gagtcgcgta 240 ggcgaggtag ctattttgag ctttgttgca ttgatttgct tttacctgct ttacctttgg 300 gtgctgagag accttatctt agttctgaag gctcgacaag gcagatccac ggaggagctg 360 atatttggtg gacaagctgt ggataggagc aaccctatcc ctaatctacc agcaccacca 420 agtcagggca atcccgggcc atttgttcca ggcacgggat aagcaatcag ccatgtccac 480 gtccaagagg aagcggggag atgattcgaa ttggaataag cgggtgccta agaagaagcc 540 atcttcagct gggctgaaga gggctggaag caaggccgat aggccatccc tccaaatcca 600 gacactccag catgctggga ccaccatgat aacggtcccc tctggaggag tatgtgacct 660 catcaacacc tatgcccgag gatctgacga gggcaaccgc cacaccagcg agactctgac 720 gtacaagatc gccgtcgact accacttcgt tgccgacgcg gcagcctgcc gctactccaa 780 caccggaacc ggtgtaatgt ggctggtgta tgacaccact cccggcggac aagctccgac 840 cccgcaaact atctttgcct accctgacac gctaaaagcg tggccggcca catggaaagt 900 gagccgggag ctgtgtcatc gcttcgtggt gaaacggcga tggttgttca acatggagac 960 cgacggtcgg attggttcgg atattcctcc ctcgaataca agttggaagc cttgcaagcg 1020 caacatctac ttccacaagt tcacgagtgg gttgggagtg agaacgcagt ggaagaatgt 1080 aacggacgga ggagttggtg ccatccagag aggagccttg tacatggtca ttgcccccgg 1140 caatggcctt acatttactg cccatgggca gacccgtctg tactttaaga gtgttggcaa 1200 ccagtaatga ataaaaacgc ccgttttatt atatctgatg aatgctgaaa gcttacatta 1260 atatgtcgtg cgttggcacg aaaaaacaca cgcaatcaat acaggggggt agtcggcggg 1320 cggctaaggg tggtgctcgg cgggcaaaac atcgaaaaat caagatctat atgaattaca 1380 cttcctccgt aggaggaagc acagggggag aataccactt ctcccccggc gacataatgt 1440 aaatgatgca gtttgcctcg aaatactcca gctgccctgg agtcatttcc ttcatccaat 1500 cttcatccga gttggcgagg attattgtag gtttagactt cttctgcacc tttttctttt 1560 taccatactt ggggtttaca atgaattccc gctgacagcc aactaactgt ttccaacaag 1620 gacagaattt aaacggaata tcatctacga tgttgtagat tgcgtcttcg ttgtatgaag 1680 accaatcaac attattttgc cagtaattat gaacccctag gcttctggcc caagtagatt 1740 ttccggttct tgttgggccg acgatgtaga ggctctgctt tcttgatctt tcatctgatg 1800 actggataga gaatccatcc attggaggtc agaaattgca tcctcgaggg tataacaggt 1860 aggttgaagg agcatgtaag cttcgggact aacctggaag atattaggct ggagccaatc 1920 attgattgac tcattacaaa gtaaatcagg tgaggagggt ggatgaggat tggtgaactc 1980 ttcctgaatc tcaggaaaaa gcttatttgc agagtattca aaatactgca attttgtgga 2040 ccaatcatag ggaaactctt tctggatcat agagaggtac tcttcctttg aagtagagtg 2100 tgaaataatg tctcgcatta tttcatcttt ggaaggcttt ttttccttta cctctgaatc 2160 agattttcct aggaaggggg acttcctagg aatgaaagta cctctctcaa acacagccag 2220 aggttccttg agaatgtaat ccctcactct gttaactgac ttggcactct gaatatttgg 2280 gtgaaaccca tttatatcaa agaaccttga gtccgatatt cttaccggct tctctgtctg 2340 aagcaatgca tgtaaatgca aacttccatc tttatgtgcc tctcgggcac atagaatgta 2400 cttgggaatc caacgaacga cgagctccca gatcatctga caggcgattt caggattttc 2460 tggacacttt ggataggtta ggaacgtgtt tgcgttcctg tgtgagaact gacggttgga 2520 tgaggaggag gccatagccg acgacgtagg atgaggctga gggatggcag actgggagct 2580 ctaaactcta tacctaccgg tgcgccttcg aaatccgccg ccctccttct tatagtgttt 2640 gtatatgggc cggaccgggc cggcccagca ggaaaagaag gcgcgcac 2688 //