ID FJ882107; SV 1; circular; genomic DNA; STD; VRL; 2687 BP. XX AC FJ882107; XX DT 06-DEC-2009 (Rel. 103, Created) DT 06-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Maize streak virus isolate MSV-A_ZA_Emp2_T8-2007, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2687 RX DOI; 10.1099/vir.0.015537-0. RX PUBMED; 19692547. RA Harkins G.W., Martin D.P., Duffy S., Monjane A.L., Shepherd D.N., RA Windram O.P., Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., RA Flett B., Ramusi M., Rybicki E.P., Peterschmitt M., Varsani A.; RT "Dating the origins of the maize-adapted strain of maize streak virus, RT MSV-A"; RL J. Gen. Virol. 90(Pt 12):3066-3074(2009). XX RN [2] RP 1-2687 RA Harkins G.W., Martin D.P., Monjane A.L., Shepherd D.N., Windram O.P., RA Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., Flett B., Ramusi M., RA Rybicki E.P., Peterschmitt M., Varsani A.; RT ; RL Submitted (02-APR-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Cape Town, RL WP 7701, South Africa XX DR MD5; 73cce3770a736b337d695ddc8bbc62f7. XX FH Key Location/Qualifiers FH FT source 1..2687 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_ZA_Emp2_T8-2007" FT /mol_type="genomic DNA" FT /country="South Africa" FT /lat_lon="28.77 S 31.88 E" FT /collection_date="2007" FT /db_xref="taxon:10821" FT CDS 157..462 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:A5JLB8" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:A5JLB8" FT /protein_id="ACZ04187.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT CDS 473..1207 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D2E105" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:D2E105" FT /protein_id="ACZ04188.1" FT /translation="MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTLQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1716..2534) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:D2E106" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2E106" FT /protein_id="ACZ04189.1" FT /translation="MASSSSNRQFSHRNVNTFLTYPKCPENPEIACQMIWELVVRWIPK FT YIVCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKSDSEIKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEFPY FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSVQQEQENLLGPEA" XX SQ Sequence 2687 BP; 689 A; 638 C; 684 G; 676 T; 0 other; taatattacc gcgccttctt ttcctgcgag ggcccggtag ggcccgagcg atttgattta 60 aagcttggtt ctgctttgta tgatttatct aaagcagccc aatctaaaga aaccggtccc 120 gggcactata aattgcctaa caagtgcgat tcattcatgg atccacagaa cgccctttat 180 tatcagccgc gggtacccac agcagctccg gcatccgcag gagtgccgtg gagtcgcgta 240 ggcgaggtag ctattttgag ctttgttgca ctgatttgct tttacttgct ttacctttgg 300 gtgctgagag accttatctt agttctgaag gctcgacaag gcagatccac ggaggagctg 360 atatttggag gacaagctgt ggataggagc aaccctatcc ctaatctacc agcaccacca 420 agtcagggca atcccgggcc atttgttcca ggcacgggat aagcattcag ccatgtccac 480 gtccaagagg aagcggggag atgattcgaa ctggagtaag cgggtgacta agaagaagcc 540 ttcttcagca gggctgaaga gggctggaag caaggccgat aggccatccc tccaaatcca 600 gacactccag catgcgggga ccaccatgat aacggtcccc tccggaggag tatgtgacct 660 catcaacacc tacgcccgag gatctgacga gggcaaccgc cacaccagcg agactctcac 720 gtacaagatc gccatcgact accacttcgt tgccgacgcg gcagcctgcc gctactccaa 780 caccggaacc ggtgtaatgt ggctggtgta tgacaccact cccggcggac aagctccgac 840 cctgcaaact atatttgcct accctgacac gctaaaagcg tggccggcca catggaaggt 900 gagccgggag ctgtgtcatc gcttcgtggt gaaacggcga tggttgttca acatggagac 960 cgacggtcgg attggttcgg atatccctcc ctcgaatgca agttggaagc cctgcaagcg 1020 caacatttac ttccacaagt tcacgagtgg gttgggagtg agaacgcagt ggaagaatgt 1080 aacggacgga ggagttggtg ccatccagag aggagcgctg tacatggtca ttgcccccgg 1140 caatggcctt acatttactg cccatgggca gacccgtctg tactttaaga gtgttggcaa 1200 ccagtaatga ataaaaactc ccgttttatt acatctgatg aatgctgaaa gcttacatta 1260 atatgtcgtg cgatggcacg aaaaaacaca cgcaatcaat acaggggggt agtaggcggg 1320 cggctaaggg tggtgctcgg cgggcaaaac atcgaaaaat caagatctat ctgaatgtac 1380 tgcctccgta ggaggcagca cagggggaga ataccacttc tcccccggcg acataatgta 1440 aattgtgcaa tttgcctcga aatactccag ctgccctgga gtcatttcct tcatccaatc 1500 ttcatccgag ttggcgagga ttattgtagg cttggacttc ttctgcacct ttttcttctt 1560 accatacttg gggtttacaa tgaaatccct ctgacagcca actaactgtt tccaacaagg 1620 acagaattta aacgggatat catctacgat gttgtagatt gcgtcttcgt tgtatgaaga 1680 ccaatcaaca ttattttgcc agtaattatg aacccctagg cttctggccc aagtagattt 1740 tcctgttctt gttggaccga cgatgtagag gctctgcttt cttgatcttt catctgatga 1800 ctggatacag aatccatcca ttgtaggtca gaaattgcat cctcgagggt ataacaggta 1860 ggttgaagga gcatgtaagc ttcgggacta acctggaaga tgttaggctg gagccaatca 1920 ttgattgact cattacaaag taaatcaggt gaggatggtg gatgaggatt ggtgaactct 1980 tcctgaatct caggaaaaag cttatttgca gagtattcaa aatactgcaa ttttgtggac 2040 caatcatagg gaaactcttt ctggatcatg gagaggtact cttctttgga agtagagtgt 2100 gaaataatgt ctcgcattat ttcatctttg gaaggctttt tttccttaat ttctgaatca 2160 gattttccta ggaagggtga cttcctagga atgaaagtac ctctctcaaa catagccaga 2220 ggttccttga gaatgtaatc cctcactctg tttactgact tggcactctg aatgtttggg 2280 tgaaacccat taatatcaaa gaaccttgag tccgatattc ttaccggctt ctctgtttga 2340 agcaatgcat gtaaatgcaa acttccatct ttgtgtgcct ctcgggcaca gacaatatac 2400 ttgggtatcc aacgaacaac gagctcccag atcatctgac aggcgatttc aggattttct 2460 ggacactttg gataggttaa gaacgtgtta acgttcctgt gtgagaactg acggttggat 2520 gaggaggagg ccatatccga cgacggagga tgaggctggg ggatggcaga ttgggagctc 2580 tcaactctat accaaccggt gcgccttcga aatccgccgc cccccctctt atagtggttg 2640 tgaatgggcc ggaccgggcc ggcccagcag gaaaagaagg cgcgcac 2687 //