ID FJ882106; SV 1; circular; genomic DNA; STD; VRL; 2687 BP. XX AC FJ882106; XX DT 06-DEC-2009 (Rel. 103, Created) DT 06-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Maize streak virus isolate MSV-A_TD_Dja_Mic26-1987, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2687 RX DOI; 10.1099/vir.0.015537-0. RX PUBMED; 19692547. RA Harkins G.W., Martin D.P., Duffy S., Monjane A.L., Shepherd D.N., RA Windram O.P., Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., RA Flett B., Ramusi M., Rybicki E.P., Peterschmitt M., Varsani A.; RT "Dating the origins of the maize-adapted strain of maize streak virus, RT MSV-A"; RL J. Gen. Virol. 90(Pt 12):3066-3074(2009). XX RN [2] RP 1-2687 RA Harkins G.W., Martin D.P., Monjane A.L., Shepherd D.N., Windram O.P., RA Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., Flett B., Ramusi M., RA Rybicki E.P., Peterschmitt M., Varsani A.; RT ; RL Submitted (02-APR-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Cape Town, RL WP 7701, South Africa XX DR MD5; 07f130f2bcf97c9200520e92e52629e2. XX FH Key Location/Qualifiers FH FT source 1..2687 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_TD_Dja_Mic26-1987" FT /mol_type="genomic DNA" FT /country="Chad" FT /lat_lon="11.97 N 15.26 E" FT /collection_date="1987" FT /db_xref="taxon:10821" FT CDS 157..462 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D2E0V9" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:D2E0V9" FT /protein_id="ACZ04184.1" FT /translation="MDPQNALYYQPRVPTAAPTSGGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNIPAPPSQGNPGPFVPGTG" FT CDS 473..1207 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q6LBI6" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:Q6LBI6" FT /protein_id="ACZ04185.1" FT /translation="MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1714..2532) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:B2BX40" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B2BX40" FT /protein_id="ACZ04186.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPF FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSLSSHQMKDQESRASTSSAQQEPENLLGPEA" XX SQ Sequence 2687 BP; 685 A; 632 C; 691 G; 679 T; 0 other; taatattacc gcgccttctt ttcctgcgag ggcccggtag ggcccgagcg atttgatgta 60 aagcttggtc ctgctttgta tgatttatct aaagcagccc attctaaaga atccggtccc 120 gggcactata aattgcctaa caagtgcgat tcattcatgg atccacagaa cgccctctat 180 tatcagccgc gggtacccac agcagctccg acatccggag gagtgccgtg gagtcgcgta 240 ggcgaggtag ctattttgag ctttgttgca ttgatttgct tttacctgct ttacctttgg 300 gtgctgagag accttatctt agttctgaag gctcgacaag gcagatccac ggaggagctg 360 atatttggtg gacaagctgt ggataggagc aaccctatcc ctaatatacc agcaccacca 420 agtcagggca atcccgggcc atttgttcca ggcacgggat aagcattcag ccatgtccac 480 gtccaagagg aagcggggag atgattcgaa ttggagtaag cgggtgacta agaagaagcc 540 ttcttcagct gggctgaaga gggctggcag caaggccgat aggccatccc tacaaatcca 600 gacactccag catgctggga ccaccatgat aacggtcccc tccggaggag tatgtgacct 660 catcaacacc tatgcccgag gatctgacga gggcaaccgc cacaccagcg agactctgac 720 gtacaagatc gccatcgact accacttcgt tgccgacgcg gcagcctgcc gctattccaa 780 caccggtacc ggtgtaatgt ggctggtgta tgacaccact cccggcggac aagctccgac 840 cccgcaaact atatttgcct accctgacac gctgaaagcg tggccggcca catggaaagt 900 gagccgggag ctgtgtcatc gcttcgtggt gaaacggcga tggttgttca acatggagac 960 cgacgggcgc attggttcgg atattcctcc ctcgaatgca agttggaagc cttgcaagcg 1020 caacatctac ttccacaagt tcacgagtgg gttgggagtg agaacgcagt ggaagaatgt 1080 aacggacgga ggagttggtg ccatccagag aggagcgctg tacatggtca ttgcccccgg 1140 caatggcctt acttttactg cccatgggca gacccgtctg tactttaaga gtgttggcaa 1200 ccagtaatga ataaaacgcc gtttttatta tatctgatga atgctgaaag cttacattaa 1260 tatgtcgtgc gatggcacga aaaacacaca caatcaatac aggggggtag tcggcgggcg 1320 gctaagggtg gtgctcggcg ggcagaacat cgaaaaatca agatctatct gaatgtactg 1380 cctccgtagg aggcagctca gggggagaat accacttctc ccccggcgac ataatgtaaa 1440 tgatgcagtt tgcctcgaaa tactccagct gccctggagt catttccttc atccaatctt 1500 catccgagtt ggcgaggatt attgtaggct tagacttctt ctgcaccttt ttcttcttac 1560 catacttggg gtttacaatg aaatctttct gacagccaac taactgtttc caacaaggac 1620 agaatttaaa cggaatatca tctacgatgt tgtagattgc gtcttcgttg tatgaagacc 1680 aatcaacatt attttgccag taattatgaa cccctaggct tctggcccaa gtagattttc 1740 cggttcttgt tgggccgacg atgtagaggc tctgctttct tgatctttca tctgatgact 1800 ggataaagaa tccatccatt ggaggtcaga aattgcatcc tcgagggtat aacaggtagg 1860 ttgaaggagc atgtaagctt cgggactaac ctggaagatg ttaggctgga gccaatcatt 1920 gattgactca ttacaaagta aatcaggtga ggagggtgga tgaggattgg tgaactcttc 1980 ctgaatctca ggaaaaagct tatttgcaga gtattcaaaa tactgcaatt ttgtggacca 2040 atcaaaggga agctctttct ggatcatgga gaggtactct tctttggaag tagcgtgtga 2100 aataatgtct cgcattattt catctttaga aggctttttt tcctttacct ctgaatcaga 2160 ttttcctagg aagggggact tcctaggaat gaaagtacct ctctcaaaca cagccagagg 2220 ttccttgaga atgtaatccc tcaccctgtt aactgacttg gcactctgaa tatttgggtg 2280 aaacccattt atatcaaaga accttgagtc agatatcctt accggcttct ctgtctgaag 2340 caatgcatgt aaatgcaaac ttccatcttt atgtgcctct cgggcacata gaatgtattt 2400 gggaatccaa cgaacaacga gctcccagat catctgacag gcgatttcag gattttctgg 2460 acactttgga tatgttagga acgtgttagc gttccggtgt gagaactgac ggttggatga 2520 ggaggaggcc atagccgacg acggaggttg aggctgaggg atggcagact gggagctcca 2580 aactctatag tatacccgtg cgccttcgaa atccgccgct cccttgtctt atagtggttg 2640 taaatgggcc ggaccgggcc ggcccagcag gaaaagaagg cgcgcac 2687 //