ID FJ882104; SV 1; linear; genomic DNA; STD; VRL; 2685 BP. XX AC FJ882104; XX DT 06-DEC-2009 (Rel. 103, Created) DT 06-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Maize streak virus isolate MSV-A_RE_Jos2_Mic19-1995 movement protein and DE coat protein genes, complete cds; and RepA gene, partial cds. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2685 RX DOI; 10.1099/vir.0.015537-0. RX PUBMED; 19692547. RA Harkins G.W., Martin D.P., Duffy S., Monjane A.L., Shepherd D.N., RA Windram O.P., Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., RA Flett B., Ramusi M., Rybicki E.P., Peterschmitt M., Varsani A.; RT "Dating the origins of the maize-adapted strain of maize streak virus, RT MSV-A"; RL J. Gen. Virol. 90(Pt 12):3066-3074(2009). XX RN [2] RP 1-2685 RA Harkins G.W., Martin D.P., Monjane A.L., Shepherd D.N., Windram O.P., RA Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., Flett B., Ramusi M., RA Rybicki E.P., Peterschmitt M., Varsani A.; RT ; RL Submitted (02-APR-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Cape Town, RL WP 7701, South Africa XX DR MD5; a3876e4012a104239f82ef8ee65e2288. XX FH Key Location/Qualifiers FH FT source 1..2685 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_RE_Jos2_Mic19-1995" FT /mol_type="genomic DNA" FT /country="Reunion" FT /lat_lon="21.36 S 55.62 E" FT /collection_date="1995" FT /db_xref="taxon:10821" FT CDS 157..462 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D2E0Z5" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:D2E0Z5" FT /protein_id="ACZ04178.1" FT /translation="MDPQNSLYVQPRVPTAAPTSAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNIPAPPSQGNPGPFVPGTG" FT CDS 473..1207 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q89614" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:Q89614" FT /protein_id="ACZ04179.1" FT /translation="MSTSKRKRGDDSNWNKRVSKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1714..>2685) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:D2E0Z7" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2E0Z7" FT /protein_id="ACZ04180.1" FT /translation="VRAFFSCWAGPVRPIHNHYKTRSGGFRRRTGCYRVESSQSAITQP FT RPPSSVMASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPKYILCAREA FT HKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKEPLAMFERG FT TFIPRKSPFLGKSDSELKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEFPYDWSTKLQY FT FEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYMLLQPTCYTL FT EDAISDLQWMDSVSSHQMKDQESRASTSSGQQEQESLLGPEA" XX SQ Sequence 2685 BP; 674 A; 629 C; 694 G; 688 T; 0 other; taatattacc gcgccttctt ttcctgcgag gtcccggtag ggaccgagcg atttgattta 60 aagcttggtc ctgctttgta tgatttatct aaagcagcct aatctaaaga atccggtccc 120 gggcactata aattgtctaa caagtgcgat tcactcatgg atccacagaa ctccttgtat 180 gtacagccgc gggtacccac agcagctccg acctccgcag gagtgccgtg gagtcgcgta 240 ggcgaggtag ctattttgag ctttgttgca ttgatttgct tttacctgct ttacctttgg 300 gtgctgagag accttatctt agttctgaag gctcgccaag gcagatccac ggaggagctg 360 atatttggtg gacaagctgt ggataggagc aaccctatcc ctaatatacc agcaccacca 420 agtcagggca atcccgggcc atttgttcca ggcacgggat aagcaatcag ccatgtccac 480 gtccaagagg aagcggggag atgattcgaa ttggaataag cgggtttcta agaagaagcc 540 ttcttcagct gggctgaaga gggctggcag caaggccgat aggccatccc tccaaatcca 600 gacactccag catgccggga ccaccatgat aacggtcccc tccggaggcg tatgtgacct 660 catcaacacc tatgcccgag gatctgacga gggcaaccgc cacaccagcg agactctgac 720 gtacaagatt gccatcgact accacttcgt tgctgacgcg gcagcctgcc ggtactccaa 780 caccggaacc ggtgtgatgt ggctggtgta tgacaccact cccggcggac aagctccgac 840 cccgcagact atatttgcct acccggacac cctcaaagcc tggccggcga catggaaggt 900 gagccgggag ctgtgtcatc gcttcgtggt gaaacggcgt tggttgttca acatggagac 960 cgacgggcgg attggttcgg acattcctcc atcgaatgca agttggaagc cttgcaagcg 1020 caacatctac ttccacaagt tcacgagtgg gttgggagtg agaacgcagt ggaagaatgt 1080 aacggacgga ggagttggtg ccatccagag aggagctttg tacatggtca ttgcccccgg 1140 caatggcctt acatttactg cccatgggca gacccgtctg tactttaaga gtgttggcaa 1200 ccagtaatga ataaaactcc gtttttatta tatctcatga atgctgaaag cttacattaa 1260 tatgtcgtgc gatggcacga aaaacacaca caatcaatac aggggggtag tcggcgggcg 1320 gctaagggtg gtgctcggcg ggcaaaacat cgaaaaatca agatgtatct gaatgtactg 1380 cctccgtagg aggcagctca cggggagaat accatttctc ccctggcgac ataatgtaaa 1440 tggtgcagtt tgcctcgaaa tactccagct gccctggaga catttccttc atccaatctt 1500 catccgagtt ggcgaggatt attgtaggct tagacttctt ctgcaccttc ttcttcttac 1560 catacttggg gttgacaatg aaatctttct ggcagccaac taactgtttc caacaaggac 1620 agaatttaaa tggaatatcg tctacgatgt tgtagattgc gtcttcgttg tatgaagacc 1680 aatcaacatt attttgccag taattatgaa cccctaggct tctggcccaa gtagactttc 1740 ctgttcttgt tggcccgacg atgtagaggc tctgctttct tgatccttca tctgatgact 1800 ggatacagaa tccatccatt ggaggtcaga gattgcatcc tcgagggtat aacaggtagg 1860 ttgaaggagc atgtaagctt cgggactgac ctggaagatg ttaggctgga gccaatcatt 1920 gattgactca ttacagagta aatcaggtga ggagggtgga tgaggattgg tgaactcttc 1980 ctgaatttca gggaaaagtt tatttgcaga gtattcaaaa tactgcaatt ttgtggacca 2040 atcataggga aactctttct ggatcataga gaggtactct tccttggagg tggagtgtga 2100 aataatgtct cgcattattt catcttttga aggctttttt tcctttaatt ctgaatcaga 2160 ttttcctagg aagggggact tcctaggaat gaaagtacct ctctcaaaca tagccagcgg 2220 ttccttgaga atgtaatctc tcaccctgtt gactgacttg gcactctgaa tatttgggtg 2280 aaacccattt atatcaaaga accttgagtc agatattctt accggcttct ctgtctgaag 2340 caatgcatgt agatgcaaac ttccatcttt atgtgcctct cgggcacata gaatatactt 2400 gggtatccaa cgaacaacga gctcccaaat catctgacag gcgatttcag gattttctgg 2460 gcactttgga taggtaagga acgtgttagc gttcctgtgt gagaactgac ggttggatga 2520 ggaggaggcc atgaccgacg acggaggacg tggctgagtg atggcagatt gggagctctc 2580 aactctataa caaccggtgc gccttcgaaa tccgccgctc ctcgttttat agtggttgtg 2640 aatgggccgg accgggccgg cccagcagga aaagaaggcg cgcac 2685 //