ID FJ882098; SV 1; circular; genomic DNA; STD; VRL; 2687 BP. XX AC FJ882098; XX DT 06-DEC-2009 (Rel. 103, Created) DT 06-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Maize streak virus isolate MSV-A_MZ_Chi4_g210-2006, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2687 RX DOI; 10.1099/vir.0.015537-0. RX PUBMED; 19692547. RA Harkins G.W., Martin D.P., Duffy S., Monjane A.L., Shepherd D.N., RA Windram O.P., Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., RA Flett B., Ramusi M., Rybicki E.P., Peterschmitt M., Varsani A.; RT "Dating the origins of the maize-adapted strain of maize streak virus, RT MSV-A"; RL J. Gen. Virol. 90(Pt 12):3066-3074(2009). XX RN [2] RP 1-2687 RA Harkins G.W., Martin D.P., Monjane A.L., Shepherd D.N., Windram O.P., RA Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., Flett B., Ramusi M., RA Rybicki E.P., Peterschmitt M., Varsani A.; RT ; RL Submitted (02-APR-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Cape Town, RL WP 7701, South Africa XX DR MD5; 744b8f73ba61db3f16bc5ff642a31277. XX FH Key Location/Qualifiers FH FT source 1..2687 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_MZ_Chi4_g210-2006" FT /mol_type="genomic DNA" FT /country="Mozambique" FT /lat_lon="24.9 S 34.17 E" FT /collection_date="2006" FT /db_xref="taxon:10821" FT CDS 157..462 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D2E0X7" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:D2E0X7" FT /protein_id="ACZ04160.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRINPIPNLPAPPSQGNPGPFVPGTG" FT CDS 473..1207 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:A5JLK9" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:A5JLK9" FT /protein_id="ACZ04161.1" FT /translation="MSTSKRKRGDDANWSKRTTKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1716..2534) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:A5JLL9" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5JLL9" FT /protein_id="ACZ04162.1" FT /translation="MASSSSNRQFSHRNVNTFLTYPKCPENPEIACQMIWELVVRWIPK FT YIVCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEFPY FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPQSTPDLLCSESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEQENLLGPEA" XX SQ Sequence 2687 BP; 688 A; 647 C; 684 G; 668 T; 0 other; taatattacc gcgccttctt ttcctgcgag ggcccggtag ggcccgagtg atttgatgta 60 aagcttggtc ctgctttgta tgatttatct aaagcagccc attctaaaga aaccggtccc 120 gggcactata aattgcctaa caagtgcgat tcattcatgg atccacagaa cgccctgtac 180 tatcagccgc gggtacccac agcagctccg gcatccgcag gagtgccgtg gagtcgcgta 240 ggcgaggtag ctattttgag ctttgttgca ctgatttgct tttacctgct ttacctttgg 300 gtgctgagag accttatctt agttctgaag gctcggcaag gcagatccac ggaggagctg 360 atatttggag gacaagctgt ggataggatc aaccctatcc ctaatctacc agcaccacca 420 agtcagggca atcccgggcc atttgttcca ggcacgggat aagcaatcag ccatgtccac 480 gtccaagagg aagcgtggag atgatgcgaa ctggagtaag cggacgacta agaagaagcc 540 ctcttcagca gggctgaaga gggctggaag caaggccgat aggccatccc tccaaatcca 600 gacactccag catgctggga ccaccatgat aacggtcccc tctggaggag tatgtgacct 660 catcaacacc tacgcccgag gatctgacga gggcaaccgc cacaccagcg agactctcac 720 gtacaagatc gccatcgact accacttcgt tgccgacgcg gcagcctgcc gctactccaa 780 caccggaacc ggtgtaatgt ggctggtgta tgacaccact cccggcggac aagctccgac 840 cccgcaaact atatttgcct accctgacac gcttaaagcg tggccggcca catggaaggt 900 gagccgggag ctgtgtcatc gcttcgtggt gaaacggcga tggttgttca acatggagac 960 cgacgggcgg attggttcgg acattcctcc ctcgaatgca agttggaagc cttgcaagcg 1020 caacatctac ttccacaagt tcacgagcgg gttgggagtg agaacgcagt ggaagaatgt 1080 aacggacgga ggagttggtg ccatccagag aggagcgttg tacatggtca ttgcccccgg 1140 caatggtctt acatttactg cccatgggca gacccgtctg tactttaaga gtgttggcaa 1200 ccagtaatga ataaaaactc ccgttttatt atatatgatg aatgctgaaa gcttacatta 1260 atatgtcgtg cgatggcacg aaaaaacaca cacaatcaat acaggggggt agtaggcggg 1320 cggctaaggg tggtgctcgg cgggcagaac attgaaaaat caagatctat ctgaatccac 1380 tgcctccgta ggaggcagct cagggggaga ataccacttc tcccccggcg acataatgta 1440 aatgacgcaa tttgcctcga aatactccag ctgccctgga gtcatttcct tcatccaatc 1500 ttcatccgag ttggcgagga ttattgtagg cttagacttc ttctgcacct ttttcttctt 1560 accatacttg gggtttacaa tgaaatccct ctgacagcca actaactgtt tccaacaagg 1620 acagaattta aacgggatat catctacgat gttgtagatt gcgtcttcat tgtatgaaga 1680 ccaatcaaca ttattttgcc agtaattatg aacccctagg cttctggccc aagtagattt 1740 tcctgttctt gttgggccga cgatgtagag gctctgcttt cttgatcttt catctgatga 1800 ctggatacag aatccatcca ttggaggtca gaaattgcat cctcgagggt ataacaggta 1860 ggttgaagga gcatgtacgc ttcgggacta acctggaaga tgttaggctg gagccaatca 1920 ttgattgact cactacaaag taaatcaggt gtggattgcg gatgaggatt ggtgaactct 1980 tcctgaatct caggaaaaag cttatttgca gagtattcaa aatactgcaa ttttgtggac 2040 caatcatagg gaaactcttt ctggatcatg gagaggtact cttctttgga agtagagtgt 2100 gaaataatgt ctcgcattat ttcatctttg gaaggctttt tttccttaac ttctgaatca 2160 gattttccta ggaaggggga cttcctagga atgaaagtac ctctctcaaa catagccaga 2220 ggttccttga gaatgtaatc cctcaccctg tttactgact tggcactctg aatgtttggg 2280 tgaaacccat taatatcaaa gaaccttgag tccgatattc ttaccggctt ctctgtttga 2340 agcaatgcat gtaaatgcaa acttccatct ttgtgtgcct ctcgggcaca gacaatatac 2400 ttgggtatcc aacgaacaac gagctcccag atcatctgac aggcgatttc aggattttct 2460 ggacactttg ggtaggttaa gaacgtgttc acgttcctgt gtgaaaactg acggttggat 2520 gaggaggagg ccatatccga cgacggagga tgaggctgag ggatggcaga tggggagctc 2580 tcaactctat accaaccggt gcgccttcga aatccgccgc cccccctctt atagtggttg 2640 tgaatgggcc ggaccgggcc ggcccagcag gaaaagaagg cgcgcac 2687 //