ID FJ882092; SV 1; circular; genomic DNA; STD; VRL; 2689 BP. XX AC FJ882092; XX DT 06-DEC-2009 (Rel. 103, Created) DT 06-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Maize streak virus isolate MSV-A_KE_Kar_K1-2006, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2689 RX DOI; 10.1099/vir.0.015537-0. RX PUBMED; 19692547. RA Harkins G.W., Martin D.P., Duffy S., Monjane A.L., Shepherd D.N., RA Windram O.P., Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., RA Flett B., Ramusi M., Rybicki E.P., Peterschmitt M., Varsani A.; RT "Dating the origins of the maize-adapted strain of maize streak virus, RT MSV-A"; RL J. Gen. Virol. 90(Pt 12):3066-3074(2009). XX RN [2] RP 1-2689 RA Harkins G.W., Martin D.P., Monjane A.L., Shepherd D.N., Windram O.P., RA Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., Flett B., Ramusi M., RA Rybicki E.P., Peterschmitt M., Varsani A.; RT ; RL Submitted (02-APR-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Cape Town, RL WP 7701, South Africa XX DR MD5; 505aa096fb20ec5a0da048e756d29c6a. XX FH Key Location/Qualifiers FH FT source 1..2689 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_KE_Kar_K1-2006" FT /mol_type="genomic DNA" FT /country="Kenya" FT /lat_lon="0.51 N 37.13 E" FT /collection_date="2006" FT /db_xref="taxon:10821" FT CDS 157..462 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:A5JLB8" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:A5JLB8" FT /protein_id="ACZ04145.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT CDS 473..1207 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D2E0W3" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:D2E0W3" FT /protein_id="ACZ04146.1" FT /translation="MSTSKRKRGDDSNWSKRVPKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTSMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1716..2534) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:A5JLD8" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5JLD8" FT /protein_id="ACZ04147.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTTKEEYLSMIQKELPY FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPQSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDNVSSHQMKDQESRASTSSAQQEQENLLGPEA" XX SQ Sequence 2689 BP; 678 A; 637 C; 699 G; 675 T; 0 other; taatattacc gcgccttctt ttcctgcgag ggcccggtag ggcccgagcg atttgatgta 60 aagcctggtc ctgctttgta tgatttatct aaagcagcct gatctaaaga aaccggtccc 120 gggcactata aattgcctaa caagtgcgat tcattcatgg atccacagaa cgccctgtat 180 tatcagccgc gggtacccac agcagctccg gcatccgcag gagtgccgtg gagtcgcgta 240 ggcgaggtag ctattttgag ctttgttgca ctgatttgct tttacctgct atacctttgg 300 gtgctgagag atcttatctt agttctgaag gctcgacaag gcagatccac ggaggagctg 360 atatttggag gacaagctgt ggataggagc aaccctatcc ctaatctacc agcaccacca 420 agtcagggca atcccgggcc atttgttccg ggcacgggat aagcattcag ccatgtccac 480 gtccaagagg aagcggggag atgattcgaa ctggagtaag cgggtgccta agaagaagcc 540 gtcttcagct gggctgaaga gggcgggaag caaggccgat aggccatccc tccaaatcca 600 gacactccag catgctggga cctccatgat aactgtccca tccggaggag tatgtgacct 660 catcaacacc tatgcccgag gatctgacga gggcaaccgc cacaccagcg agactctcac 720 gtacaagatc gccatcgact accacttcgt tgccgacgcg gcagcctgcc gctactccaa 780 caccggaacc ggtgtaatgt ggctggtgta tgacaccact cccggcggac aagctccgac 840 cccgcaaact atatttgcct accctgacac gctgaaagcg tggccggcca catggaaggt 900 gagccgggag ctgtgtcatc gcttcgtggt gaaacggcga tggttgttca acatggagac 960 cgacgggcgg attggttcgg acattcctcc ctcgaatgca agttggaagc cttgcaagcg 1020 caacatctac ttccacaagt tcacgagcgg gttgggagtg agaacgcagt ggaagaatgt 1080 gacggacgga ggagttggtg ccatccagag aggagcgttg tacatggtca ttgcccccgg 1140 caatggtctt acatttactg cccatgggca gacccgtctg tactttaaga gtgttggcaa 1200 ccagtaatga ataaaaactc ccgttttatt atatctgatg aatgctgaaa gcttacatta 1260 atatgtcgtg cgatggcacg aaaaaacaca cgcaatcaat acaggggggt agtaggctgg 1320 cggctaaggg tggtgctcgg cgggcagaac atcgaaaaat caagatctat ctgaatgtac 1380 tgcctccgta ggaggcagct cagggggaga ataccacttc tcccccggcg acataatgta 1440 aatgacgcag tttgcctcga aatactccag ctgccctgga gtcatttcct tcatccaatc 1500 ttcatccgag ttggcgagga ttattgtagg cttagacttc ttctgcacct tcttcttctt 1560 accatacttg gggtttacaa tgaaatccct ctgacagcca actaactgtt tccaacaagg 1620 acagaattta aacgggatat catctacgat gttgtagatt gcgtcttcgt tgtatgaaga 1680 ccaatcaaca ttattttgcc agtaattatg aacccctagg cttctggccc aagtagattt 1740 tcctgttctt gttgggccga cgatgtagag gctctgcttt cttgatcttt catctgatga 1800 ctggatacat tatccatcca ttggaggtca gaaattgcat cctcgagggt ataacaggta 1860 ggttgaagga gcatgtaagc ttcgggacta acctggaaga tgttaggctg gagccaatca 1920 ttgattgact cattacaaag taaatcgggt gaggattgcg gatgaggatt ggtgaactct 1980 tcctgaatct caggaaaaag cttatttgca gagtattcaa aatactgtaa ttttgtggac 2040 caatcatagg gaagctcttt ctggatcatg gagaggtact cttccttggt ggtagagtgt 2100 gaaataatgt ctcgcattat ttcatctttg gaaggctttt tttccttaac ttctgaatca 2160 gattttccta ggaaggggga cttcctagga atgaaagtac ctctctcaaa catagccaga 2220 ggttccttga ggatgtaatc cctcaccctg tttactgact tggcactctg aatgtttggg 2280 tgaaacccat taatatcaaa gaaccttgag tccgatattc ttaccggctt ctctgtttga 2340 agcaatgcat gtaaatgcaa acttccatct ttatgtgcct ctcgggcaca tagaatgtac 2400 ttgggaatcc aacgaacaac gagctcccag atcatctgac aggcgatttc aggattttct 2460 ggacactttg gataggtgag gaacgtatta gcgttccggt gtgagaactg acggttggat 2520 gaggaggagg ccatagccga cgacggaggt tgaggctgag ggatggcaga ctgggagctc 2580 caaactctat agtatacctg tgcgccttcg aaatccgccg ctcccttgtc ttatagtggt 2640 tgtaaatggg ccggaccggg ccggcccagc aggaaaagaa ggcgcgcac 2689 //