ID FJ868828; SV 1; circular; genomic DNA; STD; VRL; 2771 BP. XX AC FJ868828; XX DT 04-MAY-2009 (Rel. 100, Created) DT 04-MAY-2009 (Rel. 100, Last updated, Version 1) XX DE Cotton leaf curl Gezira virus segment DNA-A, complete sequence. XX KW . XX OS Cotton leaf curl Gezira virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2771 RA Singh M.K., Mandal B., Elbadri G.A., Varma A.; RT ; RL Submitted (27-MAR-2009) to the INSDC. RL Plant Pathology, Indian Agricultural Research Institute, Advanced Centre RL for Plant Virology, New Delhi, New Delhi 110012, India XX DR MD5; aef2ecef1964c2a71cf9eb6049345eb0. XX FH Key Location/Qualifiers FH FT source 1..2771 FT /organism="Cotton leaf curl Gezira virus" FT /segment="DNA-A" FT /host="okra" FT /mol_type="genomic DNA" FT /country="Sudan" FT /isolation_source="leaf" FT /collected_by="Gamal Abdalla Elbadri" FT /collection_date="2007" FT /identified_by="Manoj Kumar Singh" FT /db_xref="taxon:222459" FT gene 160..528 FT /gene="V2" FT CDS 160..528 FT /codon_start=1 FT /gene="V2" FT /product="precoat protein" FT /note="functions in movement" FT /db_xref="GOA:C3VIS2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:C3VIS2" FT /protein_id="ACP41019.1" FT /translation="MWDPLVNDFPESVHGFRCMLAVKYLQAVRESYDPSTLGYDLLSDL FT IGVVRRTNYVEATSRYHHFHSHLESASPSELRQPRVILCTCPHCPRHKQASVLDQQAHV FT QKTEDIPNVSQPRCPKGM" FT gene 320..1108 FT /gene="V1" FT CDS 320..1108 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="functions in encapsidation" FT /db_xref="GOA:C3VIS3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:C3VIS3" FT /protein_id="ACP41020.1" FT /translation="MSKRPADIIISTPTSKVRRRLNFDSPGLSSARAPTVLVTNKRRSW FT TNRPTYRKPRIYRMYRSPDVPKGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTKGVGITH FT RTGKRFTIKSIYILGKVWMDDNIKKQNHTNNVMFFLVRDRRPYGNSPLDFGQVFNMFDN FT EPSTATVKNDLRDHFQVLRKFTATVIGGPSGMKEQALVRRFYRINSQIVYNHQEAGNFE FT NHTEKCLLLVCYNGMYSCLKPCVCYVKDTDLLLRFCIKLI" FT gene complement(1100..1501) FT /gene="C3" FT CDS complement(1100..1501) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancement protein ReN" FT /db_xref="GOA:C3VIS4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C3VIS4" FT /protein_id="ACP41021.1" FT /translation="MDSRTGELITAHQTENGVLIWTINNPLYFKTIKEIPLTHGNQTMV FT EMQIRFNYNLRKELGIHKCFMNFRVWTISRPPTGLFLNVFRKQIMKYLYRLGVISINNV FT IRAVNHVLYDVLQTTVASEFTHNIQIKLY" FT gene complement(1245..1649) FT /gene="C2" FT CDS complement(1245..1649) FT /codon_start=1 FT /gene="C2" FT /product="transcription activation protein TrAp" FT /db_xref="GOA:Q77PZ9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q77PZ9" FT /protein_id="ACP41022.1" FT /translation="MRPSSPSQIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVAF FT TCRDNGFTHRGTHHCASDREWRTYLDNQQSPVFQNHKGDSSNARESNNGRDADKIQLQP FT QEGIGDSQMFHELQGLDDLTPSDWSFLKRI" FT gene complement(1549..2631) FT /gene="C1" FT CDS complement(1549..2631) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein Rep" FT /db_xref="GOA:C3VIS6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C3VIS6" FT /protein_id="ACP41023.1" FT /translation="MPVLNKFRINSKNYFLTYPKCSLTKEEALSQLQNLQTPTNKKFIK FT ICRELHENGEPHLHVLIQFEGKFNCKNQRFFDLVSPNRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKAEALRVITGVSSKDFVLQFH FT NLNSNLERIFQEPPAPYVSPFLSSSFDQVPEELEEWAAENVVDAAARPSRPISIVIEGE FT SRTGKTVWARSLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQKDW FT QSNTKYREQSIKGSCHIFLCNQVPILHIKEYLDEEKNAHLKSWALKNATFITISNPLYS FT GTNQSSASGGEEESNQETED" FT gene complement(2181..2474) FT /gene="C4" FT CDS complement(2181..2474) FT /codon_start=1 FT /gene="C4" FT /product="C4 Protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C3VIS7" FT /protein_id="ACP41024.1" FT /translation="MGNLIYTCSSSSKANSTAKIRDSSTWSPQIGQHISIQTFRELNPA FT PTSSPTSTRMETHWNGENSRLTEDLQEEDSRPPMTLTQQRLTQEVRQRLLGL" XX SQ Sequence 2771 BP; 695 A; 609 C; 611 G; 856 T; 0 other; accggtgggc gcgaaaaaaa aaaggggtcc ccgccccacg tgaacatgtc gcgcgagtgc 60 tgtccttgtc gcgcgatgct gtccaatcag aacgcgcgct ctacgcatta taatttgaaa 120 tttgaatata aacttgggcg ctaagtagtt gaaattaaaa tgtgggatcc tttggttaac 180 gacttccctg aatccgttca cggtttccgt tgtatgctag ccgtgaaata tttgcaggct 240 gttcgagagt cgtacgatcc ttccactctt gggtacgatc ttcttagcga tctcatcgga 300 gttgttcgcc gtaccaacta tgtcgaagcg accagcagat atcatcattt ccactcccac 360 ctcgaaagtg cgtcgccgtc tgaacttcga cagccccggg ttatcctctg cacgtgcccc 420 cactgtcctc gtcacaaaca agcgtcggtc ctggaccaac aggcccacgt acagaaaacc 480 gaggatatac cgaatgtatc gcagcccaga tgtcccaaag ggatgtgaag gtccttgtaa 540 ggtccagtct tatgaacagc gtgatgatat caagcatacg ggtattgttc gatgtgtgtc 600 ggatgttact aagggtgttg gtattactca tcgtactgga aagcgtttca ctatcaaatc 660 catctatatt cttggtaagg tatggatgga tgacaacatt aagaagcaga atcacaccaa 720 caatgtcatg ttcttccttg tccgtgatag aagaccgtat gggaattccc ctttggattt 780 tggtcaagtt tttaacatgt ttgacaacga gcctagcact gctacggtta agaacgatct 840 ccgtgatcat tttcaggtat tgaggaagtt tactgcaact gttattggtg gtccttcagg 900 aatgaaagaa caagcccttg ttcgtcgttt ttacaggatt aatagtcaga ttgtgtataa 960 ccatcaagag gctggaaatt tcgagaatca tacggagaaa tgcctattac ttgtttgtta 1020 taatggcatg tactcatgcc tcaaaccctg tgtatgctac gttaaagata cggatctact 1080 tctacgattc tgtatcaaat taatataatt ttatttgaat attgtgcgtg aattcacttg 1140 ccactgttgt ttgcaataca tcgtacaaaa catgattgac tgccctaatt acattgttaa 1200 ttgaaattac gcctaatcta tacaaatatt tcataatctg cttcctaaat acgtttaaga 1260 aaagaccagt cggagggcgt gagatcgtcc agaccctgaa gttcatgaaa catttgtgaa 1320 tccccaattc cttcctgagg ttgtagttga atcttatctg catctctacc attgtttgat 1380 tcccgtgcgt tagaggaatc tcctttatgg ttttgaaata caggggattg ttgattgtcc 1440 agataagtac gccattctct gtctgatgcg cagtgatgag ttcccctgtg cgtgaatcca 1500 ttgtctctgc acgtgaaggc tacgtatacc gtgcaaccac aagggatgtc aatcctccgt 1560 ctcctgattg ctctcttctt cgcctcccga tgctgaactt tgattggtac ctgagtacag 1620 cggatttgag atggtgatga aggtcgcatt ctttaatgcc caggatttga gatgcgcgtt 1680 cttttcctcg tctaaatact ctttaatatg aagaattggg acctgattgc agaggaagat 1740 gtggcatgac cccttaattg actgctcccg gtattttgtg ttgctttgcc agtccttttg 1800 tgcacccatg aactccttaa agtgtttcag ataatgcggg tcaacatcat ctatgacgtt 1860 ataccatgcg tcattactga acacctttgg gcttagatca agatggccgc acagataatt 1920 gtgaggccca agacttctgg cccatacggt ctttcctgtt ctgctttccc cttcaatcac 1980 tatactaatc ggtctacttg gccgcgcagc ggcatcaacg acgttctccg ccgcccattc 2040 ttcaagttct tctggaactt ggtcgaacga agaagacaaa aaaggagaaa cataaggagc 2100 tggaggctcc tgaaaaatcc tctctaaatt actatttaaa ttatgaaatt gtaaaacaaa 2160 atctttggag ctaactcccg ttataaccct aagagcctct gccttacttc ctgcgttaag 2220 cgctgctgcg taagcgtcat tggcggtctg ctgtcctcct cttgcagatc ttccgtcaat 2280 ctggaattct ccccattcca gtgtgtctcc atccttgtcg atgtaggact tgacgtcgga 2340 gctggattta gctccctgaa tgtttggatg gaaatgtgct gacctatttg gggagaccag 2400 gtcgaagaat ctctgatttt tgcagttgaa tttgccttcg aactggatga gcacgtgtaa 2460 atgaggttcc ccattttcgt ggagctctct gcagatcttg atgaattttt tatttgttgg 2520 ggtttgtagg ttttggagtt gggaaagtgc ttcttctttt gttaatgaac attttggata 2580 agtgaggaaa taatttttgg agttaatgcg gaatttgttt aaaacaggca ttttggtcaa 2640 tgggcaccga ttgacctctc tgtgaacttc ctctgatata ttggggtcct atatatagtt 2700 gggcaccaaa tggcattttg gtaaaaatcc caataatttt gaatccccat agcgcccacc 2760 gttctaatat t 2771 //