Dbfetch
ID FJ848666; SV 1; linear; genomic RNA; STD; VRL; 6422 BP. XX AC FJ848666; XX DT 26-APR-2009 (Rel. 100, Created) DT 26-APR-2009 (Rel. 100, Last updated, Version 1) XX DE Cucumber green mottle mosaic virus strain MC-1, complete genome. XX KW . XX OS Cucumber green mottle mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6422 RA Slavokhotova A.A., Andreeva E.N., Odintsova T.I., Pukhalskij V.A., RA Shijan A.N.; RT "Complete nucleotide sequences of Russian strains of Cucumber green mottle RT mosaic virus"; RL Unpublished. XX RN [2] RP 1-6422 RA Slavokhotova A.A., Andreeva E.N., Odintsova T.I., Pukhalskij V.A., RA Shijan A.N.; RT ; RL Submitted (20-MAR-2009) to the INSDC. RL Plant Genetics, Vavilov Institute of General Genetics, Russian Academy of RL Sciences, Gubkin Street, 3, Moscow 119991, Russia XX DR MD5; c35fe6430c661ceb5508f49c34b9456f. DR EuropePMC; PMC4424317; 25953166. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6422 FT /organism="Cucumber green mottle mosaic virus" FT /host="Cucumis sativus" FT /strain="MC-1" FT /mol_type="genomic RNA" FT /country="Russia" FT /collection_date="2004" FT /db_xref="taxon:12235" FT 5'UTR 1..59 FT CDS 60..5006 FT /codon_start=1 FT /transl_except=(pos:3492..3494,aa:OTHER) FT /product="RNA replicase" FT /note="186K protein; readthrough product" FT /db_xref="GOA:C3V8Q5" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:C3V8Q5" FT /protein_id="ACP17898.1" FT /translation="MANINEQINNQRDAAASGRNNLVSQLASKRVYDEAVRSLDHQDRR FT PKMNFSRVVSTEHTRLITDAYPEFSISFTATKNSVHSLAGGLRLLELEYMMMQVPYGSP FT CFDIGGNYTQHLFKGRSYVHCCNPCLDLKDVARNVMYNDIITQHVQRHKGSGGCRPLPT FT FQIDAFRRYEDSPVAVTCPDVFQECSYDFGSGRDNHAVSLHSIYDIPYSSIGPALHRKN FT VRVCYAAFHFSEALLLGSPVGNLNSIGAQFRVDGDDVHFLFSEESTLHYTHSLENIKLI FT VMRTYFPADDRFVYIKEFMVKRVDTFFFRLVRADTHMLHKSVGHYSKSKSEYFALNTPP FT IFQDKATFSVWFPEAKRKVLIPKFELSRFLSGNVKVSRMLVDADFVHTIINHISTYDNK FT ALVWKNVQSFVESIRSRVIVNGVSVKSEWNVPIDQLTDISFSIFLLVKVRKVQIELMSD FT KVVIEARGLLRRFADSLKSAVEGLGDCVYDALVQTGWFDTSSDELKVLLPEPFMTFSDY FT LEGMYEADAKIERESVSELLASGDDLFKKIDEIRNNYSGVEFDVEKFQEFCKELNVNPM FT LIGHVIEAIFSQKAGVTVTGLGTLSPEMGASVALSNNSVDTCDDMDVTEDMEEIVLMAD FT KNHSYISPEMSRWANMKYGNNNGALVEYKVGTSMTLPATWAEKGKAVLPLSGICVRKPQ FT FSKPLDEEDDLRLSNMNFFKVSDLKLKKTITPVVYTGTIRERQMKNYIDYLSASLGSTL FT GNLERIVRSDWNGTEESMQTFGLYDCEKCKWLLLPSEKKHAWAVVLASDDTTRIIFLSY FT DESGSPIIDKKNWKRFAVCSDTKVYSVIRSLEVLNKEAIVDPGVHITLVDGVPGCGKTA FT EIIARVNWKTDLVLTPGREAAAMIRRRACALHKSPVATSDNVRTFDSFVMNKKVFKFDA FT VYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYPKELRTLIVDNVE FT RRYITHRCPRDVTSFLNTIYKAAVSTTSPVVHSVKAIKVSGAGILRPELTKIKGKIITF FT TQSDKQSLIKSGYNDVNTVHEIQGETFEETAVVRATPTPIGLIARDSPHVLVALTRHTK FT AMVYYTVVFDAVTSIIADVEKVDQSILTMFATTVPTKXQLTQNSLYVHRNIFLPVTKTG FT FYTDMQEFYDRCLPGNSFVLNDFDAVTMRLRDNEFNLQPCRLTLSNLDPVPALIKSEAK FT DFLVPVLRTACERPRIPGLLENLVAMIKRNMNTPDLAGTVDITNMSISIVDNFFSSFVR FT DEVLLDHLDCVRASSMQSFSDWFSCQPTSAVGQLANFNFIDLPAFDTYMHMIKRQPKSR FT LDTSIQSEYPALQTIVYHPKVVNAVFGPVFKYLTTKFLSMVDNSKFFFYTRKKPEDLQE FT FFSDLSSHSDYEILELDVSKYDKSQSDFHFSIEMAIWERLGLDDILAWMWSMGHKRTIL FT QDFQAGIKTLIYYQRKSGDVTTFIGNTFIIAACVASMLPLDKCFKASFCGDDSLIYLPK FT GLEYPDIQATANLVWNFEAKLFRKKYGYFCGKYIIHHANGCIVYPDPLKLISKLGSKSL FT VGYEHVEEFRISLLDVAHSLFNGAYFHLLDDAIHELFPNAGGCSFVINCLCKYLSDKRL FT FRSLYIDVSK" FT CDS 60..3494 FT /codon_start=1 FT /product="RNA replicase" FT /note="129K protein" FT /db_xref="GOA:C3V8Q6" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:C3V8Q6" FT /protein_id="ACP17899.1" FT /translation="MANINEQINNQRDAAASGRNNLVSQLASKRVYDEAVRSLDHQDRR FT PKMNFSRVVSTEHTRLITDAYPEFSISFTATKNSVHSLAGGLRLLELEYMMMQVPYGSP FT CFDIGGNYTQHLFKGRSYVHCCNPCLDLKDVARNVMYNDIITQHVQRHKGSGGCRPLPT FT FQIDAFRRYEDSPVAVTCPDVFQECSYDFGSGRDNHAVSLHSIYDIPYSSIGPALHRKN FT VRVCYAAFHFSEALLLGSPVGNLNSIGAQFRVDGDDVHFLFSEESTLHYTHSLENIKLI FT VMRTYFPADDRFVYIKEFMVKRVDTFFFRLVRADTHMLHKSVGHYSKSKSEYFALNTPP FT IFQDKATFSVWFPEAKRKVLIPKFELSRFLSGNVKVSRMLVDADFVHTIINHISTYDNK FT ALVWKNVQSFVESIRSRVIVNGVSVKSEWNVPIDQLTDISFSIFLLVKVRKVQIELMSD FT KVVIEARGLLRRFADSLKSAVEGLGDCVYDALVQTGWFDTSSDELKVLLPEPFMTFSDY FT LEGMYEADAKIERESVSELLASGDDLFKKIDEIRNNYSGVEFDVEKFQEFCKELNVNPM FT LIGHVIEAIFSQKAGVTVTGLGTLSPEMGASVALSNNSVDTCDDMDVTEDMEEIVLMAD FT KNHSYISPEMSRWANMKYGNNNGALVEYKVGTSMTLPATWAEKGKAVLPLSGICVRKPQ FT FSKPLDEEDDLRLSNMNFFKVSDLKLKKTITPVVYTGTIRERQMKNYIDYLSASLGSTL FT GNLERIVRSDWNGTEESMQTFGLYDCEKCKWLLLPSEKKHAWAVVLASDDTTRIIFLSY FT DESGSPIIDKKNWKRFAVCSDTKVYSVIRSLEVLNKEAIVDPGVHITLVDGVPGCGKTA FT EIIARVNWKTDLVLTPGREAAAMIRRRACALHKSPVATSDNVRTFDSFVMNKKVFKFDA FT VYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYPKELRTLIVDNVE FT RRYITHRCPRDVTSFLNTIYKAAVSTTSPVVHSVKAIKVSGAGILRPELTKIKGKIITF FT TQSDKQSLIKSGYNDVNTVHEIQGETFEETAVVRATPTPIGLIARDSPHVLVALTRHTK FT AMVYYTVVFDAVTSIIADVEKVDQSILTMFATTVPTK" FT CDS 4993..5787 FT /codon_start=1 FT /product="movement protein" FT /note="29K protein" FT /db_xref="GOA:C3V8Q7" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:C3V8Q7" FT /protein_id="ACP17900.1" FT /translation="MSLSKVSVENSLKPEKFVKISWVDKLLPNYFSILKYLSITDFSVV FT KAQSYESLVPVKLLRGVDLTKHLYVTLLGVVVSGVWNVPESCRGGATVALVDTRMHSVA FT EGTICKFSAPATVREFSVRFIPNYSVVAADALRDPWSLFVRLSNVGIKDGFHPLTLEVA FT CLVATTNSIIKKGLRASVVESVVSSDQSIVLDSLSEKVEPFFDKVPISAAVMARDPSYR FT SRSQSVVGRGKRHSKPPNRRSDSASEESSSVSFEDGLQSDHA" FT CDS 5762..6247 FT /codon_start=1 FT /product="coat protein" FT /note="17.4K protein" FT /db_xref="GOA:Q8JJJ3" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q8JJJ3" FT /protein_id="ACP17901.1" FT /translation="MAYNPITPSKLIAFSASYVPVRTLLNFLVASQGTAFQTQAGRDSF FT RESLSALPSSVVDINSRFPSAGFYAFLNGPVLRPIFVSLLSSTDTRNRVIEVVDPSNPT FT TAESLNAVKRTDDASTAARAEIDNLIESISKGFDVYDRASFEAAFSVVWSEATTSKA" XX SQ Sequence 6422 BP; 1638 A; 1204 C; 1541 G; 2039 T; 0 other; gttttaattt ttataattaa accaacaaca acaacaacaa caaacatttt aaaacaacaa 60 tggcaaacat taatgaacaa atcaacaatc aacgtgatgc tgctgctagc gggagaaata 120 atctcgttag tcagctagca tcaaagaggg tgtatgacga ggccgttcgc tcgttagatc 180 atcaagatag acgcccaaaa atgaactttt ctcgtgtggt cagtacagag cacaccaggc 240 ttatcaccga tgcgtatccg gagttttcga ttagtttcac cgctaccaag aactcagttc 300 attcccttgc gggaggtctg aggcttcttg aattggagta catgatgatg caggtacctt 360 atggttcacc ttgctttgat attggcggta attacacgca gcatttattt aaaggcagat 420 catatgtaca ttgctgcaat ccgtgcctgg atcttaaaga cgttgcgagg aatgtgatgt 480 acaatgacat aattacgcaa catgtgcaga ggcataaagg atctggtgga tgcagacctc 540 ttccgacttt ccagatagat gctttcagga ggtacgaaga ttcgcccgtt gcagtcacct 600 gtccagacgt tttccaagaa tgttcctatg atttcgggag tggcagggat aatcatgcgg 660 tctcattgca ttcgatttat gatatccctt attcttcgat cggaccagct cttcatagga 720 aaaacgtgag agtctgttat gcagcctttc atttctcgga ggcgttgctc ttaggttcgc 780 ccgtgggtaa tttaaatagt ataggggctc aatttagggt tgatggtgac gatgtgcatt 840 ttctttttag tgaggagtca actttgcatt atactcatag tttagagaat attaagttaa 900 tcgtaatgcg tacttatttt cctgctgatg ataggttcgt gtatattaag gagtttatgg 960 ttaagcgtgt ggacactttc ttctttaggt tggttagggc agacacacat atgcttcata 1020 aatctgtagg gcactattcg aagtcgaaat ctgagtattt tgcgttgaac acccccccga 1080 tttttcaaga taaggccacg ttttctgtgt ggtttcccga agcgaaacgg aaggtgttga 1140 tacctaagtt cgaactctcg agatttcttt ctggaaatgt gaaagtctct aggatgcttg 1200 tcgatgctga ttttgtccat accattatta atcacattag cacgtacgat aacaaggctt 1260 tagtgtggaa gaatgttcag tcttttgtag aatctatacg ctctagggta attgtaaacg 1320 gagtttccgt gaaatctgaa tggaacgtgc cgatcgatca gcttactgat atctcattct 1380 cgatattcct tctcgtgaag gttagaaagg tgcagattga gctaatgtct gataaggtcg 1440 tgatcgaggc gaggggtttg cttcggaggt tcgctgatag tcttaaatcc gccgtagaag 1500 gactaggtga ctgcgtctat gatgctctag ttcaaaccgg ttggtttgac acctccagcg 1560 acgaactgaa agtattgcta cctgaaccgt ttatgacctt ttcagattac ctcgaaggga 1620 tgtacgaggc agatgcgaaa attgagagag agagtgtctc tgagctgctt gcttctggag 1680 atgatctgtt caagaagatt gatgagataa ggaacaatta cagcggagtt gaatttgatg 1740 tggagaaatt tcaagaattc tgtaaagaac tgaatgttaa tcccatgcta attggtcatg 1800 tgatcgaagc tattttttcg cagaaggcag gggtgacagt cacgggccta ggcacgctct 1860 ctcctgagat gggtgcttcc gttgcgttgt ccaataattc tgtagataca tgtgatgata 1920 tggatgtaac tgaggatatg gaggaaatag tgttgatggc agacaagaat cactcttaca 1980 tttctccaga aatgtcgaga tgggctaata tgaaatatgg caataataac ggggccttag 2040 ttgaatacaa ggtcggaacc tcgatgactt tacctgccac ctgggcagaa aagggtaagg 2100 ctgtcttacc gttgtcggga atctgtgtga gaaagcccca attttcaaag ccactcgatg 2160 aggaggacga cttgaggttg tcaaacatga atttctttaa ggtgagtgat ctaaagttaa 2220 agaagactat cactccagtt gtttatactg ggaccattcg agagaggcag atgaagaatt 2280 atatcgatta tctatcggct tctctgggtt ctacgcttgg taatcttgag agaattgtca 2340 ggagtgattg gaatggtacc gaggagagca tgcaaacttt tggattgtac gattgtgaga 2400 agtgcaagtg gttgctgtta ccatccgaga agaaacacgc ctgggctgta gtcctagcga 2460 gtgatgatac cactcgtata atcttcctgt cgtatgatga atccggttct cctataattg 2520 ataagaaaaa ttggaagcgg ttcgctgtct gttctgatac taaagtttat agtgtgattc 2580 gtagtttaga agtcttaaat aaggaggcca tagtcgatcc tggggtgcat ataactttag 2640 tcgatggggt gccgggctgt ggaaaaactg cagaaattat agcgagggtc aattggaaaa 2700 ctgaccttgt gttgactccc ggaagggaag cggctgctat gatcaggcga agagcctgtg 2760 ccctgcacaa gtcacctgta gctactagtg ataacgttag gacttttgac tctttcgtaa 2820 tgaataagaa ggtttttaaa tttgatgccg tttatgtaga tgagggtctt atggtccata 2880 cggggttgct caacttcgcg ttgaagattt caggttgtaa aaaagccttt gtcttcggtg 2940 atgctaagca aattccgttt attaataggg ttatgaattt tgattatcct aaggaattaa 3000 gaactttaat agttgataac gtagagcgta ggtatattac ccataggtgt cctagagatg 3060 tcactagctt tcttaatact atttataaag ctgcggtttc taccactagt ccggttgtac 3120 attccgtgaa ggcaataaag gtttctgggg ctggtattct gaggcccgag ttgacgaaga 3180 tcaaagggaa gatcataacg tttactcagt ctgataaaca atccttgatc aagagtgggt 3240 acaatgatgt gaatactgtg catgagattc aaggggagac ctttgaggaa acggcggttg 3300 tacgtgcgac accgactcca ataggtctga ttgctcgaga ttcaccacac gtgttggtgg 3360 ctttaacgcg gcataccaag gcaatggtgt attataccgt tgtgttcgat gccgttacaa 3420 gcataatagc agatgtggaa aaggtcgatc agtcaattct gaccatgttt gctactactg 3480 tgcctaccaa atagcaatta acgcagaact ctctgtatgt tcaccgcaat attttcctcc 3540 ctgtcactaa gacagggttt tatacggata tgcaggagtt ctatgatagg tgccttccag 3600 ggaattcctt tgttttgaac gatttcgatg ccgtcaccat gcggttgagg gataacgaat 3660 ttaatttgca accttgtaga ttaactttaa gtaatttaga tccggtgccg gctttgatca 3720 agagtgaggc aaaagatttt ctggttcccg tattgcgaac ggcttgcgaa aggccacgta 3780 ttccgggtct tctcgaaaat cttgttgcta tgataaagag gaatatgaat actcctgatt 3840 tggctggaac cgtggacata actaacatgt ctatttctat agtagataat ttcttttctt 3900 cctttgttag ggacgaggtt ctacttgatc atttagattg cgttagagct agttctatgc 3960 agagtttttc tgattggttt tcttgtcagc caacctcggc ggttggccag ttagctaatt 4020 ttaatttcat agatttacct gcctttgata catatatgca tatgattaag aggcagccta 4080 agagtcggtt agatacttca attcagtccg aatatccggc cttgcaaact attgtatatc 4140 atccgaaggt ggtaaacgca gttttcgggc cggtttttaa gtatctgact actaagtttc 4200 ttagcatggt agataattct aagtttttct tttatactag gaaaaagcca gaggatctgc 4260 aggagttttt ctcggatctt tcttcccatt ctgattatga aattcttgag ctcgatgttt 4320 ctaaatatga taagtcgcag tccgatttcc atttctccat cgagatggca atttgggaaa 4380 ggctaggact agatgatatt ttagcttgga tgtggtccat gggtcataag agaactatac 4440 tgcaagactt ccaagctgga ataaagacgc tcatttatta tcaaaggaag tctggtgatg 4500 taactacttt tataggtaat acttttatta ttgcagcgtg cgtagctagt atgttaccgt 4560 tagataagtg ttttaaggct agtttttgtg gtgatgattc gttaatctac cttcctaagg 4620 gtttggagta tcctgatatt caggctaccg ccaatttggt ttggaatttt gaggcgaaac 4680 ttttccggaa gaagtatggt tacttctgcg ggaaatatat cattcatcac gccaacggct 4740 gtattgttta ccctgaccct ttaaagttaa ttagtaaatt aggtagtaag agtcttgtcg 4800 ggtatgagca tgtcgaggag tttcgtatat ctctccttga tgtcgctcat agtttgttta 4860 atggtgctta tttccatttg ctcgacgatg caatccacga gttgtttcct aatgctgggg 4920 gttgcagttt tgtaataaat tgtttgtgta agtacttgag tgataagcgc cttttccgta 4980 gtctttatat agatgtctct aagtaaggtg tcggtcgaga actcgttgaa acctgagaaa 5040 ttcgttaaaa tttcctgggt tgacaagttg ctccctaatt acttttctat tcttaagtac 5100 ctatctataa ctgactttag tgtagttaaa gctcagagtt atgaatccct cgtgcctgtc 5160 aagttgttgc gtggtgttga tcttacaaaa cacctttatg tcacactgtt gggcgttgtg 5220 gtttctggtg tatggaacgt accggaatcc tgtaggggtg gtgctactgt tgctttggtt 5280 gacacaagga tgcattctgt tgcagaagga actatatgca aattttcagc tcccgccacc 5340 gtccgcgaat tctctgttag gttcatccct aactattctg tcgtggctgc ggatgccctt 5400 cgcgatcctt ggtctttatt tgtaaggctc tctaacgtag gtattaagga tggttttcat 5460 ccattaactt tagaggtcgc ctgtttagtt gccactacta attctattat aaaaaagggg 5520 cttagagctt ctgtagttga gtctgttgtc tcttccgatc agtcgattgt tctagattct 5580 ttatctgaga aagttgagcc tttcttcgat aaagtcccta tttcagcggc tgtaatggcg 5640 agagacccca gttataggtc taggtcgcag tctgtcgttg gtcgtggtaa gcggcattct 5700 aaacctccaa atcggaggtc ggactctgct tctgaagagt ccagttctgt atctttcgaa 5760 gatggcttac aatccgatca cgcctagcaa acttattgcg tttagtgctt cctatgttcc 5820 cgttagaact ttacttaatt ttctagtggc gtcgcaaggt actgctttcc aaactcaggc 5880 aggaagagat tccttccgtg agtctttgtc tgcgttacct tcatctgttg tagatattaa 5940 ttctaggttc ccgagtgcgg gtttttacgc tttcctcaac ggtcctgtgt tgaggcctat 6000 cttcgtttcg cttcttagct ctacggatac gcgtaatagg gtcattgagg ttgtagatcc 6060 tagcaatccg acgactgctg agtcgcttaa cgcagtcaag cgtactgacg atgcgtctac 6120 agccgctagg gctgagatag ataatttgat agagtctatc tctaaggggt ttgatgttta 6180 tgacagggct tcttttgaag ccgcgttttc ggtagtctgg tcagaggcta ccacctctaa 6240 ggcttagcct tgagggtctt ctgacggtgg tgcacaccat agtgcatagt gctttcccgt 6300 tcactttaat cgaacggttt gctcattggt ttgcgaaaac ctctcgcgtg tgacgctgaa 6360 gtttttatgg gcagtaattc tgcaaggggt tcgaatcccc cctttccccg ggtaggggcc 6420 ca 6422 //