ID FJ843021; SV 1; linear; genomic RNA; STD; VRL; 4003 BP. XX AC FJ843021; XX DT 25-MAR-2010 (Rel. 104, Created) DT 25-MAR-2010 (Rel. 104, Last updated, Version 1) XX DE Carnation mottle virus, complete genome. XX KW . XX OS Carnation mottle virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Alphacarmovirus. XX RN [1] RP 1-4003 RA Chen Y.-K., Chang Y.-S., Chen C.-C.; RT "Occurrence of Carnation mottle virus infecting lisianthus in Taiwan"; RL Unpublished. XX RN [2] RP 1-4003 RA Chen Y.-K., Chang Y.-S.; RT ; RL Submitted (18-MAR-2009) to the INSDC. RL Plant Pathology, National Chung Hsing University, 250 Kuo Kuang Road, RL Taichung 402, Taiwan XX DR MD5; 37a11f297af232c93f579a2fdf3dd4e8. XX FH Key Location/Qualifiers FH FT source 1..4003 FT /organism="Carnation mottle virus" FT /host="Eustoma grandiflorum (lisianthus)" FT /lab_host="Nicotiana benthamiana" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /collected_by="Ching-Chung Chen" FT /collection_date="Jun-2006" FT /identified_by="Y.K. Chen and C.C. Chen" FT /db_xref="taxon:11986" FT 5'UTR 1..69 FT CDS 70..2679 FT /codon_start=1 FT /transl_except=(pos:805..807,aa:OTHER) FT /transl_except=(pos:2359..2361,aa:OTHER) FT /product="RNA-dependent RNA polymerase" FT /note="RdRp" FT /db_xref="GOA:D4HP44" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D4HP44" FT /protein_id="ADA69469.1" FT /translation="MGLPSLLVEGVIGCTLVGGLVAVGSAALAVRATIGVVEFNRECVR FT GARRIVSSGGKCLIVQSPYGNPNQGLIRGEDEEIDNVEESTPEELTQLIEVKAEVDGKE FT VVVSKKRVVNRHLRQRFVRSIAIEAKNHFGGDISPSKANYLSVSKFLTGKCKERHVVPA FT HTRDCVSAAMVLVFTPDVHEIRMMAGLASDAAYGRKIAMASILNRKGWCWRLMVNPLDR FT ARWWEMWCVVNGFDSNKPVTFPKXGGLFYLNGVETKIRRGGHPSVIEVDGQCPPKERKL FT YVQNAITTGYEYRVHNHSYANLRRGLLERVFYVERNKELVSCPQPEPGSFKEMGYLRRR FT FHRVCGNHSRISANDLVDCYQGRKRTIYENAAASLLDRAIERKDGDLKTFIKAEKFNVN FT LKSDPAPRVIQPRSPRYNVELGRYLKKYEHHAYKALDKIWGGPTVMKGYTTEEVAQHIW FT SAWNQFQTPVAIGFDMSRFDQHVSVAALEFEHSCYLACFEGDAHLANLLKMQLVNHGVG FT FASNGMLRYTKEGCRMSGDMNTALGNCLLACLITKHLMKIRSRLINNGDDCVLICERTD FT IDYVVSNLTTGWSRFGFNCIAEEPVYEMEKIRFCQMAPVFDGAGWLMVRDPLVSMSKDS FT HSLVHWNNETNAKQWLKSVGMCGLRIAGGVPVVQEFYQKYVETAGNVRENKNITEKSSS FT GFFMMADRAKRGYSAVSDECRFSFYQAFGITPDQQIALEGEIRSLTINTNVGPQCEAAD FT SLWILNRKYQXLESKCSLEIEENKRHVDRWPRMPSVNLHLIVLTGVIGLMLLIRLRCTF FT TSTFSLPPLVTLNQIIALSFCGLLLNSISRAERACYYNYSVDSSKRQHISISTPNGK" FT CDS 2334..2519 FT /codon_start=1 FT /product="P7 protein" FT /db_xref="GOA:Q778T9" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:Q778T9" FT /protein_id="ADA69470.1" FT /translation="MDIESEVPVVGKQMLAGNRGKQKTRRSVAKDAIRKPASDSTNGGN FT WVNVADKIEVHIHFNF" FT CDS 2425..2679 FT /codon_start=1 FT /product="P9 protein" FT /db_xref="GOA:D4HP46" FT /db_xref="UniProtKB/TrEMBL:D4HP46" FT /protein_id="ADA69471.1" FT /translation="MPSVNLHLIVLTGVIGLMLLIRLRCTFTSTFSLPPLVTLNQIIAL FT SFCGLLLNSISRAERACYYNYSVDSSKRQHISISTPNGK" FT CDS 2669..3715 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D4HP47" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR013669" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D4HP47" FT /protein_id="ADA69472.1" FT /translation="MENKGEKIAMNPTVQTLAQKGDTLAVKLVTRGWASLSTNQKRRAE FT MLAGYTPAVLAFTPRRPRMTNPPPRTSRNSPGQAGKSMTMSKTELLSTVKGTTGVIPSF FT EDWVVSPRNVAVFPQLSLLATNFNKYRITALTVKYSPACSFETNGRVALGFNDDASDTP FT PTTKVGFYDLGKHVETAAQTAKDLVIPVDGKTRFIRDSASDDAKLVDFGRIVLSTYGFD FT KADTVVGELFIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGK FT WCIIVRGTVEGGFTKPTLIGPGISGNVDYESARPIAVCELVTQMEGQILKITKTSAEQP FT LQWVVYRV" FT 3'UTR 3716..4003 XX SQ Sequence 4003 BP; 1128 A; 867 C; 1086 G; 922 T; 0 other; gggtaagctg gcgggcaaac ctacactcta tcttagttac attatatatt ccaaccatct 60 gctttcacta tgggattacc cagtctacta gtggaaggcg ttattggatg cactctagtc 120 ggtggtttgg tggctgtggg tagcgcagcg ctggccgttc gggcgaccat cggtgttgta 180 gaattcaata gggagtgtgt gcgcggggcg agaaggatcg tatctagcgg aggaaagtgc 240 ttaatagtcc aatcccctta tggtaatcct aaccaaggat tgataagagg tgaagacgaa 300 gaaattgaca atgtggagga gtcaacaccg gaggaattga ctcagttgat tgaggttaag 360 gcggaagtgg atgggaaaga ggtggtcgtc tccaagaagc gtgtagttaa caggcacttg 420 agacaacgat tcgtccgctc catagccatc gaagccaaaa atcacttcgg cggtgatatc 480 agccctagca aggccaacta cctttccgtt tccaagtttc tgacgggaaa atgcaaggag 540 agacatgttg tgcccgctca cactagggat tgtgtgagtg ctgccatggt gctggtgttc 600 acccccgacg tccacgagat caggatgatg gcaggattgg cgtctgacgc agcgtacgga 660 agaaagatcg caatggcaag catactgaac aggaaagggt ggtgttggag gctaatggta 720 aatccattag atagggcaag atggtgggaa atgtggtgcg ttgtaaacgg gtttgactcc 780 aacaaacccg tcacctttcc aaaatagggg ggcctgttct acctcaatgg tgtggagacg 840 aaaattcgtc gtggaggcca cccatcagtg attgaggtag acgggcaatg tcctcccaaa 900 gagagaaaac tctacgtaca gaatgccata accactggtt atgaatacag ggtccacaac 960 cattcgtacg caaacctcag acgagggctc cttgagagag ttttctatgt tgagcgcaac 1020 aaggagctag tcagctgtcc gcaacctgaa cccggcagct ttaaagagat gggatacctg 1080 cgacgcaggt tccatagagt gtgtggtaat cattcccgga tctctgccaa tgatttggta 1140 gattgttatc agggcaggaa acgcacgatc tatgagaatg cagcagcgtc cctacttgat 1200 agagctatcg aaaggaagga tggcgatctc aaaaccttta ttaaggcgga gaaattcaac 1260 gtgaatctga aaagtgatcc tgctcctcgg gttatacaac ccaggagccc tcgctacaat 1320 gtggagttgg gccggtactt aaagaagtat gaacaccatg cttacaaagc cttagacaag 1380 atctggggag gaccaacagt catgaaagga tacactacag aggaggtagc acagcacatt 1440 tggagcgcat ggaatcaatt ccagacacct gtggccatag gatttgatat gtcaagattc 1500 gatcagcatg tgtctgtagc cgcgctcgag ttcgaacatt catgctattt agcctgtttt 1560 gaaggggacg cacatctcgc caacttgctt aagatgcaac tggtgaatca tggcgtgggt 1620 tttgcgagta atggaatgtt gcgatacacg aaggaagggt gcagaatgag cggtgacatg 1680 aacactgcct tgggcaactg tttgttggct tgccttatca ccaaacactt aatgaaaatc 1740 aggagcagac tgatcaacaa tggggatgac tgcgtgctta tttgcgaaag aacagacatc 1800 gactacgtcg tgagtaattt aacgacggga tggagtcgat ttggattcaa ttgcatagca 1860 gaagagccag tgtacgaaat ggaaaagatc aggttctgcc agatggcacc ggtgtttgat 1920 ggagcaggct ggctgatggt cagagaccct ttggtgagca tgagcaagga ttctcactcc 1980 ctagtgcatt ggaacaacga gacgaatgca aaacaatggc tgaagtcagt aggaatgtgc 2040 ggtctgcgga ttgccggggg ggttccagtt gtgcaagagt tctaccaaaa atacgttgaa 2100 acagccggaa atgtgagaga gaacaaaaat atcacagaga agagtagttc tgggttcttt 2160 atgatggcgg atcgcgctaa gcggggctat tctgctgtgt ctgatgagtg ccggtttagc 2220 ttctaccagg ctttcggcat cacgccagac cagcagatcg cattggaggg tgagatcagg 2280 tctctcacta tcaacaccaa cgtggggccc cagtgtgaag cggcagattc actatggata 2340 ttgaatcgga agtaccagta gttggaaagc aaatgctcgc tggaaataga ggaaaacaaa 2400 agacacgtag atcggtggcc aaggatgcca tccgtaaacc tgcatctgat agtactaacg 2460 ggggtaattg ggttaatgtt gctgataaga ttgaggtgca cattcacttc aacttttagt 2520 ttgcccccac tggtaacttt aaatcagata atagcgttgt cattttgtgg tcttctatta 2580 aacagcatct ctcgggcaga aagagcttgc tactacaact actctgttga tagttctaaa 2640 cgacaacaca tttcaataag tacaccaaat ggaaaataaa ggagaaaaga tcgcgatgaa 2700 tcccactgtg caaacattgg cgcagaaggg ggacacgtta gccgtgaagt tggtgacaag 2760 ggggtgggcc tctctgagta cgaaccagaa gaggagagct gaaatgcttg ctggatacac 2820 tccagcggtc ctagccttca caccccgacg accacggatg acaaaccctc ctccaagaac 2880 cagtaggaat tcaccaggac aagctggaaa gtccatgacg atgagtaaga ccgaactatt 2940 aagcaccgtc aaaggtacca caggtgttat cccaagcttt gaagactggg tcgtttcccc 3000 ccgaaacgta gccgtcttcc ctcaactctc gctgctggcg acaaacttca acaagtaccg 3060 catcactgcg cttactgtga agtactcacc cgcgtgcagc ttcgagacca atgggagggt 3120 ggctctggga ttcaacgatg acgcttcgga cacaccacca accaccaagg ttggatttta 3180 cgatctgggc aaacatgtgg aaactgctgc acagacagct aaggatctag tgataccagt 3240 agacggtaaa acccggttca tcagggactc ggctagtgat gatgccaaac tagtcgattt 3300 tggacgaatc gtcttgtcaa catacgggtt tgacaaggct gatactgtgg tgggcgaatt 3360 gtttatacag tacacgattg tgctgagtga cccaaccaag acggccaaaa tttcacaggc 3420 aagcaacgat aaggtgtcgg acggaccaac gtatgtggtc ccttcggtta atggcaacga 3480 gctacaacta agagtggtag ccgctgggaa atggtgcatt atagtgcggg gtacggttga 3540 gggaggcttc accaaaccca cacttattgg gccgggaatc agcggtaatg tggactatga 3600 aagtgccaga cctatcgccg tttgtgaatt ggtgacacaa atggagggcc agatattgaa 3660 aatcaccaaa acctcagcag aacaacctct ccaatgggtt gtttataggg tgtgaatgca 3720 atagaaaagt ttgttagaca cacacggcgg gacgtgttgc cggagctgcc actcccccca 3780 agatggatcg atattaacca tctttggcaa cagcgtgcgt gactaaccga acctagtaat 3840 tgcatagcat tcgactgtaa cctgttctct gctgaatacg agggtggcct cgtgatccca 3900 aaccataaaa gaaaccaact tgttggtgga agggcttgga agtaggatca accactgttt 3960 attaactagg ggtgagagta ttcactgtac tctttccccg ccc 4003 //