ID FJ824814; SV 1; circular; genomic DNA; STD; VRL; 7446 BP. XX AC FJ824814; XX DT 15-MAR-2011 (Rel. 108, Created) DT 08-SEP-2011 (Rel. 110, Last updated, Version 2) XX DE Sugarcane bacilliform virus clone 10, complete genome. XX KW . XX OS Sugarcane bacilliform virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7446 RX DOI; 10.1016/j.virusres.2011.06.016. RX PUBMED; 21741419. RA Muller E., Dupuy V., Blondin L., Bauffe F., Daugrois J.H., Nathalie L., RA Iskra-Caruana M.L.; RT "High molecular variability of sugarcane bacilliform viruses in Guadeloupe RT implying the existence of at least three new species"; RL Virus Res. 160(1-2):414-419(2011). XX RN [2] RP 1-7446 RA Dupuy V., Blondin L., Daugrois J.-H., Laboureau N., Iskra-Caruana M.-L., RA Muller E.; RT "The high molecular variability of Sugarcane bacilliform viruses in RT Guadeloupe reveals existence of at least two new species"; RL Unpublished. XX RN [3] RP 1-7446 RA Muller E.; RT ; RL Submitted (13-MAR-2009) to the INSDC. RL BIOS, CIRAD, Campus International de Baillarguet, Montpellier 34398, France XX DR MD5; 3b0646c000c74466904e6bd0b9226c29. DR EuropePMC; PMC5496340; 28680479. XX FH Key Location/Qualifiers FH FT source 1..7446 FT /organism="Sugarcane bacilliform virus" FT /host="sugarcane hybrid variety B51129" FT /isolate="Guadeloupe" FT /mol_type="genomic DNA" FT /country="Guadeloupe" FT /collection_date="Feb-2004" FT /clone="10" FT /note="group: A" FT /db_xref="taxon:12435" FT CDS 537..1070 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF1" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:F2Q6K7" FT /protein_id="ACZ02409.1" FT /translation="MAENTWDQKFEEFLNSSELAQAQLEYLDLASEAKVSNKDLAHNLR FT ITTYRLSLTGKVLWASQRKNRDLLLQVRQEQESQKRELQELQNLSKIVRSQRSDLKRAH FT ERLDVISEELQALKKEYLKRRPLNKEDVEELVVRISEQPKFIEKQTEALTEELTKEVQN FT LRKIIHTFEQKLMG" FT CDS 1067..1474 FT /codon_start=1 FT /product="DNA-binding protein" FT /note="ORF2" FT /db_xref="GOA:F2Q6K8" FT /db_xref="UniProtKB/TrEMBL:F2Q6K8" FT /protein_id="ACZ02410.1" FT /translation="MSNSVTSSSVYQQAITDTTVDWESPGIGISGKGSVSNTQLTRQLN FT TTIFLCIRIQQEVLALKDTVADIQNRVKTIEGKSGSTSTGGSQLKGEIDSINDKLTKIQ FT QIQKTQPKKDSGTPATSKVFQDPYNILRSLK" FT CDS 1474..6987 FT /codon_start=1 FT /product="polyprotein" FT /note="contains capsid protein, aspartyl proteinase, FT reverse transcriptase, and RNase H; ORF3" FT /db_xref="GOA:F2Q6K9" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR001995" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:F2Q6K9" FT /protein_id="ACZ02411.1" FT /translation="MAQRPRVAGNGSRTATIAEAGTPLIDDQIREYRNTRRAAYEAQRM FT ARQAGNIVGRIVGRQPREHTLSMVVDPNSELSRSLAHRARTVPGEVLYMTQRDSPINRV FT YRNRTEERMLVTNGQQDRSFIYPESFEELVAAGFEYIHLGVLQVRLQIMHRTYAGTMAL FT VVFRDTRWTQEGEEDRSIIAAMEADLSQGHQLIYVIPDIMMTIRDFYQHVQISVLTKGY FT QGFQGEANLLITRSCRCRLTNVPNVGFAYNIQKVVEYLNSKGVKAIQAQKLSTKKFQGT FT EWNIKPSNVVVPMQPTTMITRVNYDSSRSIRFGDYQASTSSAPPRYNDDGDSDDEIQRT FT VEHVNMLYILDEAEDEYPTLAAEEEIFPLENMVGEEAIISQFLESLNLSDDNEDSRSQH FT VMNLDEEEFPKMKEMERVLASVSESAISSFRPPEVEMGGIAPAYAPATPTTGWAGTTEF FT PFTTARRPRVWDSNNEFYMLPPAQSRQGAIFVMPLDFDVKVFERWESITLLHMAERSFD FT NADDKMRYIENLLGEDEKKHFVEWRMKYTVEYETMKAQALGDQGTQNIINQIRLIFFLE FT NPQVGTTTSQDAAYKTLKSLVCTEMTDTAIYRYMNDYFHLSAKTGRAWASEELSKEFFT FT KLPRGLGDAVEKAFKEKHPSNTVGIAARITFTKRYLKELCEKVALQKSIGKMDFCRNTP FT VHGLYGREKSYRKYGARKSTSYKGKPHKSHVRIGKKKHMALRKKNCRCYACGEEGHFAS FT ECRNPRKIMDRVKVLDSLELEDGLDVVSVGFDEDDVSDIYSIDEEADNYKFTNEEMEDF FT ENYEVYMMNLEEIEEPNSYLVGEPSDWRSKMKVSRRQYFCKHEWSFEEAHVTTCKACGS FT EAVPKHRVDCKKCEMTVCLMCQPWYYKDINTEEVKKTRVRIERVIDWKDIALKQHEVLK FT TSIAREKQLSEEVEFLRKQNKELKSKEPIVFEEDTEETAQLVQKLEDMEKENELMKILI FT GQKEAEEVQYLNKITELNERIKRLEQQQKYREEEQVNALEEVSVNALRPRNNHLNIKCE FT VEVKEKKVTLNAILDTGATVCVADERMIPSSMREQAKNRIIIRGVNGVTEVNEVTSAGK FT LWVGKQWFYLPQTYIMPTLADGVHMIIGMNFIRTVGLRIENGEVTIYKIMTTVQAPPIV FT HELNYIEELELELHEYYSICSAETSKGEIAEEFISPNLISRMKKLGYIGEEPLKHWEKN FT QVKCRIEVKNPDMVIEDKPLKHVTPAMKEAVAKHVKKLLELKVIRPSKSKHRTTAIIVQ FT SGTEVDPITGKEKRGKERLVFNYKRLNDNTEKDQYSLPGINTIIRRIGNAKIYSKFDLK FT GGFHQVAMDPESIPWTAFWAIDGLYEWLVMPFGLKNAPAIFQRKMDNCFRGTEEFIAIY FT IDDILIFSETVQQHKEHLKKFMEICEKNGLVLSPTKMKIGTRQVDFLGATIGNSKIKLQ FT PHVIQKIIDRKDEELKEVKGLRKWLGILNYARSYIPKLGKILGPLYSKTSPNGEKRMNS FT QDWKIVKEVKEIVANLPDLELPPEKAIMVIETDGCMEGWGGVCKWKDNSSQPRWSEKIC FT AYASGKFTPIKSTIDAEIQAVINSLDKFKIYYLDKKELVIRTDSQAIVSFYKKSSDHKP FT SRVRWLAFTDYITGTGLEVKFEHIDGKDNVLADTLSRLVKIIFHQEKHQSEEILINAVD FT ETLKKGDTNTRQKINDLVKRYESWMNTGFSHHINVLTIKEEPVFKCGCNKPAKLMTSRT FT SRNPNRQFYSCDTKSCFTWVWKDQIDTFVQEKLAWEKEIVEALRCEESTEEWQEPAIDL FT GDTIEDAFDLLDVSNDDQWRRS" XX SQ Sequence 7446 BP; 2596 A; 1327 C; 1780 G; 1743 T; 0 other; tggtatcaga gcaaagtttg ttttaatggc tttcatgggg taaaactctt aggtaggagc 60 cgatgggctc tgcttttctt gatttgggtt aatagctgta caagtctatg gttcgataag 120 tcgaatggag caattgaggt ttattgaaga aaaatgatta tgtctcagtt atagttggtt 180 acaatcgtaa ggaaaaatga ttatgcaata tgctagttgg tccaaaagaa catgccttcc 240 caactaagaa aacttcaggt gaggaagttg tgtgtgttgg ttcttcgtat gtgtgcggat 300 aatatcctag ctagaatgca taagctacgt gaagtactta caatggttgt gatagtatcc 360 tatacaagag acatgaacct cgtgaagtat ttaataaacc gattgaagct ccagtaagac 420 gtaagaacta gggacctctg tgactgggct aggtacgcca atagagagaa gtatcccgga 480 gggctactcc taccttgttt atcataagaa agtcatttca ccttgcgtaa ctgtttatgg 540 ccgaaaatac ttgggatcaa aagttcgagg aattcttgaa ctcatctgaa cttgctcaag 600 cccaacttga gtacctggac ttagcctcag aggctaaagt ctcgaacaaa gatttagctc 660 ataatctacg aatcaccact tatcgattaa gtctcacagg gaaagtcctt tgggcctccc 720 agagaaagaa tcgagatctc cttttgcagg tccgtcaaga gcaagaaagt cagaagcgcg 780 agctgcagga attgcagaac ctcagtaaga ttgtacgcag ccagcgtagc gatctgaagc 840 gggctcacga acgactggac gttatctcgg aggaacttca ggctctcaag aaggaatatc 900 tcaagagacg ccccctcaac aaggaagacg tcgaagaact agtcgtgcga atctctgaac 960 aaccaaagtt cattgagaag cagactgagg ctttgactga agaactcacg aaggaagttc 1020 agaacctccg gaagattatt catacctttg agcaaaagct catgggatga gtaactctgt 1080 tacaagctcg tcagtgtatc agcaggctat cactgatacc actgttgatt gggaatcccc 1140 tggaatcggg atatctggca aaggaagtgt gagcaacaca cagctcacaa gacaattgaa 1200 cacaaccata ttcctgtgta tcaggataca acaggaagtc ttagcactga aggacacggt 1260 tgcggacatt cagaaccgtg tgaagaccat tgaaggcaaa tctgggtcaa cctcaactgg 1320 tggttctcag ttgaagggtg agatcgactc catcaacgac aagctgacca agattcagca 1380 gatccagaag acgcagccca agaaggatag tggtactcca gccactagca aagtattcca 1440 agacccatat aatattctca gaagcttgaa gtaatggcac agaggccgag agtcgcaggg 1500 aatggttcca ggacagcaac aattgcagaa gcaggaacac ccctgattga tgatcagata 1560 agggagtaca ggaatactag aagagctgca tatgaagccc aaagaatggc caggcaagct 1620 ggcaatattg ttggaagaat cgtcggcaga caaccaaggg agcacaccct atcaatggtt 1680 gtagatccaa actctgagct gagcagaagc cttgcacaca gagcaagaac agtacctgga 1740 gaagtactgt acatgactca gagagacagt cctataaaca gggtatacag aaataggaca 1800 gaagaaagaa tgctggtaac caatgggcaa caggataggt ctttcatata tcctgaatca 1860 tttgaagaat tggttgcagc aggatttgag tatatacact taggtgtatt acaagtaaga 1920 ctacagatca tgcatagaac atatgcaggc accatggctt tagtagtctt cagagataca 1980 aggtggacac aagaaggtga ggaagataga tccattattg cagcaatgga agcagatcta 2040 tcacaaggcc accagctgat ctatgtcatc ccagatatta tgatgacaat tagagatttc 2100 tatcagcatg tgcagatcag cgtgttaaca aaaggctatc agggatttca gggagaagcc 2160 aaccttctca tcacaaggag ttgccgatgt aggcttacca acgtcccaaa tgttggtttt 2220 gcttataata ttcaaaaggt tgttgaatac ctgaactcta aaggagttaa agccatacaa 2280 gcacaaaagc tcagtacaaa gaagttccaa ggcacagaat ggaacatcaa gccgtctaat 2340 gtggttgtac ctatgcaacc aacaactatg atcaccagag taaattatga cagttccaga 2400 agcataagat ttggtgatta tcaggcaagt acatcatcag caccgccaag atacaatgac 2460 gatggagact cagatgatga aatccagaga actgttgaac atgtcaacat gctatatatc 2520 ctggatgaag ccgaagatga gtatccaact ttggcagctg aagaggaaat ctttcctctt 2580 gaaaacatgg tgggagaaga ggctatcatt tcgcaatttt tggaaagcct caatctatct 2640 gatgataatg aagattcaag gtcacagcat gtgatgaatc ttgatgaaga agaatttcct 2700 aaaatgaagg aaatggaaag ggtcttagct tcggtctctg aatcagcaat cagttcattc 2760 agaccaccag aagttgaaat gggaggtata gcaccggcat atgctccagc aacaccaaca 2820 acaggatggg ctggaaccac cgagttccca ttcacaacag ccagaagacc aagagtgtgg 2880 gattcaaaca atgagttcta catgttacct ccagctcaaa gcagacaagg ggctatattt 2940 gttatgccct tggattttga tgtcaaagtg tttgagagat gggaaagtat tactctctta 3000 cacatggctg aaaggtcatt tgacaatgca gatgacaaga tgagatacat tgagaatctg 3060 cttggagaag atgaaaagaa gcacttcgta gaatggagga tgaagtacac agttgaatat 3120 gaaactatga aggctcaagc acttggggat cagggtacac aaaatatcat taaccaaatc 3180 aggttaatat tctttttgga aaaccctcaa gtcggaacaa ctacctcaca agatgctgcc 3240 tataagacac tgaagagtct ggtctgtaca gaaatgacag acacagcaat ctataggtac 3300 atgaatgact acttccattt atctgcaaag acaggaagag catgggcatc tgaggagtta 3360 tcaaaggaat tctttaccaa gctaccaaga ggattaggtg atgctgtgga gaaagcattc 3420 aaggagaaac atccaagcaa caccgttggc attgcagcga gaataacctt cacaaagaga 3480 tatttgaaag agttatgcga gaaggtagca ttgcaaaaga gtatcgggaa gatggatttc 3540 tgcagaaata ccccagtaca tggattgtat ggtagagaaa agtcttacag aaagtatggt 3600 gctcgaaaga gtacatccta caagggaaag cctcataaat cacatgtgag gattggcaag 3660 aaaaagcata tggccttaag aaagaagaat tgcagatgct atgcatgcgg tgaagaaggt 3720 cattttgcta gtgaatgcag aaacccaaga aagattatgg atagagtcaa agttctggac 3780 tctcttgaat tagaagatgg gttagatgta gtgtcagtgg gatttgatga agacgatgtc 3840 tcagacatct attcaattga tgaagaagct gacaactata agttcactaa tgaagagatg 3900 gaagacttcg agaattatga agtctatatg atgaatcttg aagagattga agagccaaac 3960 agttatttgg ttggtgaacc atcagactgg agatcaaaga tgaaggtctc tagaagacaa 4020 tacttctgca agcatgagtg gagttttgaa gaagctcatg ttacaacatg taaggcatgt 4080 ggatcagaag cagtacctaa gcacagggtt gactgcaaga aatgtgaaat gacagtatgc 4140 ctgatgtgtc aaccatggta ttacaaagat atcaacacag aagaagtaaa gaagacaaga 4200 gttagaatag agagagtaat tgattggaag gatattgctc taaagcaaca tgaagtcctg 4260 aaaacaagca tagcaagaga aaagcaactc tctgaagaag tggaattctt gagaaagcag 4320 aacaaagaat taaagagcaa agagccaatt gtatttgaag aagatactga agaaacagca 4380 caattggtac aaaaactaga agacatggaa aaagaaaatg agctcatgaa gatcttaata 4440 ggtcaaaagg aagcagaaga agttcaatat ttgaacaaaa tcacagagct taatgaaagg 4500 attaaaaggc tagagcaaca acagaagtat agagaagaag aacaagtaaa tgctctagag 4560 gaagtctcag tgaacgctct taggccaagg aacaaccatt tgaatatcaa atgtgaagtg 4620 gaagtcaaag agaagaaggt tacacttaat gcaatcttgg acacaggtgc aacagtctgt 4680 gttgcagatg aaagaatgat accttcaagc atgagagagc aagccaagaa tagaataatc 4740 atccgaggag tgaacggagt aacagaagtg aatgaagtaa cttcagctgg gaaactctgg 4800 gttggcaagc agtggtttta cttgcctcag acatacatca tgcccacact agctgatgga 4860 gttcacatga ttattgggat gaattttatc agaacagttg gcttaagaat tgaaaatggt 4920 gaggttacaa tctacaagat catgacaaca gtgcaagccc caccaatagt tcatgaattg 4980 aactatattg aggaattgga acttgagctg catgaatatt acagcatatg ctcagcagaa 5040 acttcgaagg gtgaaatagc tgaggaattt atatctccaa atttgatcag tagaatgaag 5100 aaattgggat atattggaga ggaacctttg aagcactggg agaaaaacca agtgaagtgc 5160 aggattgaag tgaaaaatcc tgatatggtg attgaagata agcctttaaa gcatgtcaca 5220 ccagccatga aggaagcagt ggctaaacat gtgaagaagc tgttagaact gaaagtcatt 5280 agaccttcaa agtctaagca cagaacaaca gctatcatag tgcagtctgg cacagaagtt 5340 gatcctatta ctggaaaaga gaaaagaggc aaggagagat tggtattcaa ctataagagg 5400 ttgaatgaca acacagagaa ggatcaatac agtttgcccg ggattaacac tataatcaga 5460 agaattggaa atgccaagat ctacagcaag tttgatctaa agggtggatt ccaccaggtg 5520 gcaatggatc cagaatctat cccgtggacg gcattttggg caatagatgg attatatgaa 5580 tggctagtaa tgccatttgg tctgaaaaat gctccagcaa tattccaaag gaaaatggat 5640 aactgtttca gaggaacaga ggaattcatt gcaatataca ttgatgatat attgatattc 5700 tcagaaacag tgcaacaaca taaagagcat ttgaagaaat tcatggagat atgtgaaaag 5760 aatggtctgg tcttaagtcc aaccaagatg aagattggaa ccagacaagt ggacttctta 5820 ggtgcaacta tcgggaattc aaaaatcaag ttgcagcctc acgtcattca gaagataatt 5880 gatagaaaag atgaggaatt gaaagaagtc aagggattga gaaaatggct aggaattctg 5940 aattatgcca gaagctacat tcccaagctt ggcaaaatcc tagggccatt atattcaaaa 6000 actagtccaa atggagaaaa aagaatgaat tcacaagact ggaagattgt gaaagaggtg 6060 aaggagattg tggcaaatct tcctgatcta gagctacctc ctgagaaggc aatcatggta 6120 attgaaacag atggttgcat ggaaggatgg ggaggagttt gtaaatggaa agataacagc 6180 tcacagccaa gatggtcaga gaaaatttgt gcttatgcaa gtgggaaatt cacacctatc 6240 aagagcacaa tagatgctga aattcaagct gttataaata gtctggacaa attcaagatt 6300 tattatcttg ataagaagga acttgtgatc agaactgaca gccaagcaat tgtgagtttc 6360 tacaagaaga gcagtgatca taagccttca agggttagat ggctagcctt cacagactac 6420 ataactggaa ctggtcttga agttaagttt gaacatatag atgggaagga taatgttcta 6480 gcagacacgc tatcaaggct agtgaagatc atatttcacc aagagaagca tcaatccgag 6540 gaaatattga tcaatgcagt tgatgaaact ttgaagaaag gagatacaaa cactaggcag 6600 aagatcaatg acctggtgaa aagatatgaa agctggatga acacaggatt cagtcatcac 6660 atcaacgttc ttacaatcaa agaagaaccg gtgttcaaat gtggatgcaa caagccagca 6720 aagctgatga catccagaac atcaagaaac cccaatcggc agttttactc ctgtgatact 6780 aaatcatgtt ttacttgggt ctggaaagac caaattgata catttgtgca ggaaaaactc 6840 gcatgggaaa aggagatagt tgaagcacta agatgtgaag aaagcacgga agaatggcag 6900 gaaccagcca tagatctagg cgacacgatt gaggacgcat tcgatctact tgacgtaagc 6960 aatgacgatc aatggagaag gtcgtaagca atgacgtcaa ggcggaagtg gtggacccga 7020 accactagat ggcactaact agtgtgacag ggttatgaga tgccaagtga gctggaatac 7080 cactcacttt atgtaaagga gcggcctgcg tgctgtctct tagctttatt cctttgtcta 7140 ggtgcgatgc tgcgtcacgc acaatgacat ctagtccttt gcgggtgttt tacgcaaaga 7200 ggtaggcccg aggcacgtga tgttgccctt tgcattattg gtgggtgcac ctaacgatgc 7260 gaagcgagct ccacaagccc tctatataag aaggccttgt attcaggttg caagcatgca 7320 ccacaacgca agcttactcc tgactaagga aataaacaaa gtttgtgctt gaaacacact 7380 tcttgtctaa gtgcgagtag agcgcaagat cctcttccgc gtcggcggcg acccgccact 7440 ccgtcc 7446 //