ID FJ824813; SV 1; circular; genomic DNA; STD; VRL; 7444 BP. XX AC FJ824813; XX DT 15-MAR-2011 (Rel. 108, Created) DT 17-FEB-2017 (Rel. 131, Last updated, Version 3) XX DE Sugarcane bacilliform Guadeloupe A virus clone 1, complete genome. XX KW . XX OS Sugarcane bacilliform Guadeloupe A virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7444 RX DOI; 10.1016/j.virusres.2011.06.016. RX PUBMED; 21741419. RA Muller E., Dupuy V., Blondin L., Bauffe F., Daugrois J.H., Nathalie L., RA Iskra-Caruana M.L.; RT "High molecular variability of sugarcane bacilliform viruses in Guadeloupe RT implying the existence of at least three new species"; RL Virus Res. 160(1-2):414-419(2011). XX RN [2] RP 1-7444 RA Dupuy V., Blondin L., Daugrois J.-H., Laboureau N., Iskra-Caruana M.-L., RA Muller E.; RT "The high molecular variability of Sugarcane bacilliform viruses in RT Guadeloupe reveals existence of at least two new species"; RL Unpublished. XX RN [3] RP 1-7444 RA Muller E.; RT ; RL Submitted (13-MAR-2009) to the INSDC. RL BIOS, CIRAD, Campus International de Baillarguet, Montpellier 34398, France XX DR MD5; 33480f860c4e749ac83716670ef35f5c. DR EuropePMC; PMC5496340; 28680479. XX FH Key Location/Qualifiers FH FT source 1..7444 FT /organism="Sugarcane bacilliform Guadeloupe A virus" FT /host="sugarcane R570 hybrid variety" FT /isolate="Guadeloupe" FT /mol_type="genomic DNA" FT /country="Guadeloupe" FT /collection_date="Feb-2004" FT /clone="1" FT /note="group: A" FT /db_xref="taxon:1960252" FT CDS 538..1071 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF1" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:F2Q6K4" FT /protein_id="ACZ02406.1" FT /translation="MVENTWDQKFEEFLNSSELTQAQLEYLDLASEAKVSNKDLAHNLR FT ITTYRLSLTGKVLWASQRKNRDLLLQIRQEQESQKRELQELQNLSKIVRSQRSDLKRAH FT ERLDIISEELQALKKECLKRRPLNKEDVEELVVRISEQPKFIEKQTEALTEELTKEVQN FT LQRIIHTFEQKLMG" FT CDS 1068..1475 FT /codon_start=1 FT /product="DNA-binding protein" FT /note="ORF2" FT /db_xref="GOA:F2Q6K5" FT /db_xref="UniProtKB/TrEMBL:F2Q6K5" FT /protein_id="ACZ02407.1" FT /translation="MSNSATSSSVYQQAITNTTGDWESPGIVISGKGSVSNTQLTRQLN FT TAIFLCIKVQQEVLALKDTVADIQNRVKTIEGKSGSTSTGSFQLKSEIDSISDKLTKIQ FT QIQKTQPKKDSGTLATSKVFQDPYNILRNLK" FT CDS 1475..6835 FT /codon_start=1 FT /product="polyprotein" FT /note="contains capsid protein, aspartyl proteinase, FT reverse transcriptase, and RNase H; ORF3" FT /db_xref="GOA:F2Q6K6" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR001995" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:F2Q6K6" FT /protein_id="ACZ02408.1" FT /translation="MAQRPRVTGNGSRTEAIAEAGTPLIDDQIREYRNTRRAAYEAQRM FT ARQAGNIVGRIVGRQPREHTLSMVVDPNSELSRSLAHRARTVPGEVLYMTQRDSPVNRV FT YRNRTGERMLVTNGQQDRSFIYPESFEELVAAGFEYIHLGVLQVRLQIMHRTYAGTMAL FT VVFRDTRWTQEGEEDRSIIAAMEADLSQGHQLIYVIPDIMMTIRDFYQHVQISVLTKGY FT QGFQGEANLLITRSCRCRLTNVPNVGFAYNIQKVVEYLNSKGVKAIQAQKLSTKKFQGT FT DWNIKPSNVVVPMQPTTMITRVNYDSSRSIRFGDYQASTSSAPPRYNDDGDSGDEIQTT FT VEHVNMLYILDEAEDEYPTLAAEEESFPLENMVGEEAIISQFLESLNLSNDDDEDSRSQ FT HVMNLDEEEFPEMKEIERVLASVSESAISSFRPPEVEMGGIAPAYAPATSTTGWAGTTE FT FPFTTARRPRVWDSNNEFYMLPPAQSRQGAIFIMPMDFDVKVFERWESITLLHMAERSF FT DNADDKMRYIENLLGEDEKKHFVEWRMKYTVEYETMKAQALGDQGTQNIINQIRLIFFL FT ENPQVGTTTSQDAAYKTLKSLVCTEMTDTAIYRYMNDYFHLSAKTGRAWASEELSKEFF FT TKLPRGLGDAVEKAFKEKHPSNTVGIAARITFTKRYLKELCEKVALQKSIGKMDFCRNT FT PVHGLYGKEKSYRKYGARKSTSYKGKPHKSHVRIGKKKHLALRKKNCRCYACGEEGHFA FT SECRNPRKIMDRVKVLDSLELEDGLDVVSVGFDEDDVSDIYSIDEEADNYKFTNEEMED FT FKNYEVYMMNLEEIEEPNDYLVGEPSDWRSKMKVSRRQYFCKHEWSFEEAHVTTCKACG FT SEAVPKHRVDCKKCGMTVCLMCQPWYYKDINTEEVKKTRVRIERVIDWKDIALKQHEVL FT KTSIAREKQLSEEVEFLRKQNKELKSKEPIVFEEDTEETAQLVQKLEDMEKENELMKIL FT ISQKEAEEIQYLNKITELSERIKRLEQQQKYREEEQVNALEEVSVNALRPRNNHLNIKC FT EVEVKERKVTLNAILDTGATVCVADERMIPSSMREQAKNRIIIRGVNGVTEVNEVTSAG FT KLWVGKQWFYLPQTYIMPTLADGVHMIIGMNFIRTVGLRIENGEVTIYKIMTTVQAPPI FT VHELNYIEELELELQEYYNICSAETSKGEIAEEFISPNLINRMKRLGYIGEEPLKHWEK FT NQVECRIEVKNPDMIIEDEPLKHVTPAMKETMAKHVKKLLELKVIRPSQSKHRTTAIIV FT QSGTEIDPVTGKEKRGKERLVFNYKRLNDNTEKDQYSLPGINTIIRRIGNAKIYSKFDL FT KSGFHQVAMDPESIPWTAFWAIDGLYEWLVMPFGLKNAPAVFQRKMDSCFRGTEEFIAI FT YIDDILVFSETVQQHKEHLKKFMEICERNGLVLSPTKMKIGTRQVDFLGATIGNSKIKL FT QPHIIQKIIDIKDEELKEVKGLRKWLGILNYARSYIPKLGKILGPLYSKTSPNGERRMN FT SQDWKIVKEVKEIVANLPDLELPPEKAIMIIETDGCMDGWGGVCKWKDNSSQPRWSEKI FT CAYASGKFTPIKSTIDAEIQAVINSLDKFKIYYLDKKELVIRTDSQAIVSFYKKSSDHK FT PSRVRWLAFTDYITGTGLEVKFEHIDGKDNVLADTLSRLVKIIFHQEKHQSEEILINAV FT EKTLKKGDASTRQKINDLVKRYESWMNTGFNHHVNVLTIKEEPVFKCGCNKPARLKTSR FT TSRNPNRQFYSCETKSCFTWVWKDQIDTFV" XX SQ Sequence 7444 BP; 2575 A; 1318 C; 1793 G; 1758 T; 0 other; tggtatcaga gcaaggttcg ttttaatggc tttcatgggg taaaaccctt aggtaggagc 60 cgatgggctc tgcttttctt gatttgggtt aatagctgta caagtctatg gttcgataag 120 tcgaatggag caattgaggt ttattgaaga aaaatgatta tgtctcagtt atagttggtc 180 acaatcgtaa ggaaaaatga ttatgcaata tgctagttgg tccaaaagaa catgccttcc 240 caactaagag aaacttcgag tgatgaagtt gtgtatgttg gttcttcgta tgtgtgcgga 300 taatatccta gctgaaatgc ataagctacg tgaagtactt acaatggttg tgatagtatc 360 ctatgcaaga gacatgaacc tcgtgaagta tttaataaac cgattgaagc tccagtaaga 420 cgtaagaact agggacctct gtgactggct aggtacgcca atagagagaa gtatcccgga 480 gggctactcc taccttgttt atcataagaa agtcatttca ccttgcgtaa ctgttttatg 540 gtcgaaaata cttgggatca aaagttcgag gaattcttga actcatccga acttactcaa 600 gcccaacttg agtatctgga cttagcctca gaggctaaag tctcaaacaa agatttggct 660 cataatctgc gaatcaccac ttatcgatta agtctcacag ggaaagtcct ttgggcctcc 720 cagagaaaga atcgagatct ccttttgcag atccggcaag agcaagaaag tcagaagcgt 780 gagctgcaag aattgcagaa cctcagtaag attgtacgca gccagcgtag cgatctgaag 840 cgggctcacg aacgactgga catcatctcg gaggaacttc aggctctcaa gaaggaatgt 900 ctcaagagac gccccctcaa caaggaagac gtcgaagaac tagtcgtgcg aatctctgaa 960 caaccaaagt tcattgagaa gcagactgag gctttgactg aagaactcac gaaggaagtt 1020 cagaacctcc agaggattat tcataccttt gagcagaagc tcatgggatg agtaactccg 1080 ctacaagctc gtcagtgtat cagcaggcta tcactaatac cactggtgat tgggaatccc 1140 ctggaattgt gatatctggt aaaggaagtg tgagcaacac acagctcaca aggcaattga 1200 atacagccat attcctgtgt atcaaggtac agcaggaagt cctagcactg aaggacacgg 1260 ttgcggatat tcagaaccgt gtaaagacca ttgaaggcaa atcggggtca acctcgactg 1320 gtagtttcca gttgaagagt gagatcgact ccatcagtga caagctgacc aagattcagc 1380 agatccagaa gacgcagcct aagaaggata gtggtactct agccactagc aaagtattcc 1440 aagatccata taatattctc aggaacttga agtaatggcg caaaggccaa gagtcacagg 1500 gaatggttcc agaactgaag caattgcaga ggcaggaaca cccctgattg acgatcagat 1560 cagagaatat aggaatacta gaagagctgc atatgaagcc caaagaatgg ccaggcaagc 1620 tggcaatatt gttggaagaa tagttggtag acaaccaagg gagcacaccc tatcaatggt 1680 tgtagatcca aactctgagc taagcagaag ccttgcacac agagcaagaa cagtaccagg 1740 agaagtactg tatatgactc agagagacag tcctgtaaac agggtataca gaaacaggac 1800 aggagaaagg atgctggtaa ccaatgggca gcaggataga tctttcatat atcctgaatc 1860 ttttgaagaa ttggttgcag caggttttga gtatatacac ttgggtgtat tacaagtaag 1920 actacagatc atgcatagaa catatgcagg cactatggcc ttagtagtct tcagggatac 1980 aaggtggaca caagaaggtg aagaagatag atccattatt gcagcaatgg aggcagatct 2040 atcacagggc caccagctga tatatgttat cccagatatt atgatgacaa ttcgggattt 2100 ctatcagcat gtacaaatca gtgtgctgac caaaggctat cagggatttc agggagaagc 2160 caaccttctt atcacaagga gttgtagatg taggcttacc aacgtcccaa atgttggttt 2220 tgcttataat attcaaaagg tcgttgaata cctgaactct aaaggagtta aagccataca 2280 agcacagaag ctgagcacga agaagttcca aggcacagat tggaacatta agccatctaa 2340 tgtggttgta cctatgcaac caacaactat gatcaccaga gtgaactatg acagttcaag 2400 aagtataaga tttggtgatt atcaggcaag tacatcatca gcaccgccaa gatacaatga 2460 tgatggagac tcaggtgatg aaatccagac aactgttgag catgtcaaca tgctatacat 2520 cctggatgaa gctgaagatg agtatccaac tttggcagct gaagaggaaa gctttcctct 2580 tgaaaacatg gtgggagaag aggctatcat ttcgcaattt ttggaaagcc tcaatctatc 2640 taatgatgat gatgaagatt caaggtcaca acatgtgatg aaccttgatg aagaagaatt 2700 tcctgaaatg aaggaaattg aaagggtcct agcttcggtc tctgaatcgg caatcagttc 2760 attcagacca ccagaagttg aaatgggagg tatagcacca gcatatgctc cagcaacatc 2820 aacaacagga tgggcgggaa ccactgaatt cccattcaca acagctagaa gaccgagagt 2880 gtgggattca aacaatgagt tctacatgtt acctccagca cagagcagac aaggggctat 2940 atttattatg cccatggatt ttgatgttaa ggtgtttgag agatgggaaa gtattactct 3000 cttacacatg gctgaaaggt cgtttgataa tgcggatgac aaaatgagat acattgagaa 3060 tctgctcgga gaagatgaaa agaagcactt cgtagaatgg agaatgaagt acacagttga 3120 atatgaaact atgaaggctc aagcacttgg ggatcagggt acacaaaata tcattaacca 3180 aataaggtta atattctttt tggagaaccc tcaagttgga acgactacct cacaagatgc 3240 tgcctataag acactgaaga gtctggtctg tacagaaatg acagacacag caatctatag 3300 gtacatgaat gattacttcc atttgtccgc aaagacagga agagcatggg catctgagga 3360 attgtcaaag gaattcttta ccaagctacc aagaggatta ggtgatgctg tggagaaagc 3420 attcaaggaa aaacatccaa gcaacactgt tggtattgcc gcaaggatta ccttcacaaa 3480 gagatatctg aaggaattat gtgagaaggt agcattacag aagagtattg ggaagatgga 3540 tttctgtaga aataccccag tacatggatt atatggtaaa gaaaaatcct acaggaagta 3600 tggtgctcgc aagagtacat cctacaaggg aaaacctcat aaatcacatg tgaggattgg 3660 taagaagaag catttggcct taagaaagaa gaattgcaga tgttatgcat gtggtgaaga 3720 aggtcacttt gctagtgaat gcagaaaccc aaggaagatc atggacagag tcaaagttct 3780 ggactctctt gaattagaag atgggttaga tgtagtgtca gtagggtttg atgaggacga 3840 tgtctcagac atctattcaa ttgatgaaga agctgacaac tataaattca ccaatgaaga 3900 gatggaagac ttcaagaact atgaagtcta tatgatgaat cttgaggaga ttgaagaacc 3960 aaatgattat ttggtaggag aaccatcaga ctggagatca aaaatgaagg tctctagaag 4020 acagtatttc tgcaaacatg agtggagttt tgaagaagct catgttacaa cctgcaaggc 4080 atgtggatca gaagcagtac ccaagcacag ggttgactgc aagaaatgtg gaatgacagt 4140 atgtctgatg tgtcagccat ggtattacaa ggacatcaac acagaagaag tgaaaaagac 4200 aagagttaga attgaaagag taattgattg gaaggatatt gctctgaagc aacatgaagt 4260 tctgaaaaca agcattgcaa gagaaaagca actctctgaa gaagttgagt tcttgagaaa 4320 gcagaacaaa gaattgaaga gcaaagagcc aattgtattc gaagaagata ctgaagaaac 4380 ggcacaattg gtacaaaaac tagaagatat ggaaaaggag aatgagctca tgaaaatctt 4440 gataagtcaa aaagaagcag aagaaattca gtatttgaac aaaatcacag agctcagtga 4500 aagaatcaaa agactagagc aacaacagaa gtacagagaa gaagaacaag tgaatgctct 4560 agaagaggtt tcagtaaatg ctctcaggcc aagaaataac cacttgaata tcaagtgtga 4620 agtagaagtt aaagagagga aggttacact taatgcaatc ctagacacag gtgcaacagt 4680 ctgtgttgca gatgaaagaa tgataccttc aagcatgaga gagcaagcca aaaacagaat 4740 aatcatccga ggagtgaacg gagttacgga agtcaatgaa gtaacttcag ctgggaagct 4800 ttgggttggc aagcagtggt tttacttgcc tcaaacatac atcatgccca cactagctga 4860 tggagttcac atgattattg ggatgaattt tatcagaaca gttggcttaa ggattgaaaa 4920 tggtgaggtt acaatctaca agattatgac aacagtgcaa gccccgccaa tagttcatga 4980 attaaattat attgaggaac tagagcttga actgcaagag tactataaca tatgctcagc 5040 agagacttca aaaggcgaaa ttgcagaaga gtttatatct ccaaacttga ttaacagaat 5100 gaagaggtta gggtatattg gagaagagcc tttgaagcac tgggagaaaa accaagtgga 5160 gtgcaggatt gaagttaaga atcctgatat gataatagaa gacgagccat tgaagcatgt 5220 cacgcctgca atgaaagaaa caatggctaa acatgtgaag aagctgttag agttgaaggt 5280 tattagaccc tcacaatcta aacacagaac aacagcaatc atagtgcagt ctggcacaga 5340 aattgatcct gtaactggca aggagaaaag aggaaaagaa aggctggtgt tcaactataa 5400 aaggttgaac gacaacactg agaaggatca atacagtttg cccgggatta acactataat 5460 cagaagaatt ggaaatgcca agatctacag caagtttgat ttgaagagtg gatttcacca 5520 ggtggcaatg gacccggaat ccatcccgtg gacggcattt tgggcaatcg atgggctata 5580 tgaatggcta gtaatgccat ttggtctgaa aaatgctcca gcagtattcc aaagaaaaat 5640 ggatagctgt ttcagaggaa cagaagagtt tattgcaata tacattgatg atatattggt 5700 attctcagaa acagtacaac aacacaaaga gcatttgaag aaatttatgg aaatatgtga 5760 aaggaatggt ctggtcttaa gtccaaccaa gatgaaaatt ggaaccagac aggtggactt 5820 cttaggtgca actatcggaa attcaaaaat caagttgcag cctcatatca ttcagaagat 5880 aattgatata aaagatgagg aattgaaaga agtcaaggga ctgagaaagt ggctaggaat 5940 tctgaattat gccagaagct acattcccaa gcttggcaaa atcctagggc cattatattc 6000 aaaaacaagt ccaaacggag aaagaagaat gaattcacaa gactggaaga ttgtgaaaga 6060 ggtgaaagaa attgtggcaa atcttcctga tctagagcta cctcctgaga aagcaatcat 6120 gataattgaa acagatggtt gtatggatgg atggggagga gtctgtaagt ggaaagataa 6180 cagctcacag ccaaggtggt cagagaaaat ttgtgcttat gcaagtggga aattcacacc 6240 gatcaaaagc acaatagacg ctgaaattca agctgttata aatagtttgg ataaattcaa 6300 gatttattat cttgataaga aggaacttgt gatccgaaca gatagtcaag ctattgtgag 6360 cttctacaag aagagcagtg atcataagcc ttcaagggtt agatggctag ccttcacaga 6420 ttacatcact ggaacaggtc ttgaagtaaa gtttgagcac atagatggga aagacaatgt 6480 tctagcagac acgttatcaa ggctagtgaa gatcatattt caccaagaga agcatcagtc 6540 tgaagaaatc ttaatcaatg cagttgagaa aactctaaag aagggagatg ctagtacaag 6600 gcagaagatc aatgatctgg tgaaaagata tgaaagctgg atgaacacag gatttaacca 6660 tcatgttaat gtcctcacaa tcaaagaaga accagtgttc aagtgtggat gcaataagcc 6720 agcacggctg aagacatcca ggacatccag aaatccgaac cgacagtttt actcctgtga 6780 aactaaatca tgttttactt gggtctggaa agaccaaatt gatacatttg tgtaggaaaa 6840 acttgtctgg gagagagaaa taagtgaagc cataagatgt gaagatgaag aatggcagga 6900 gccggccata gatccaggcg acacgatcga tggcgcattt gatctgcttg acgtaagcaa 6960 tgacgatcaa tggagaaggt cgtaagcagt gacgtcaatg cggaagtggt ggacccgaac 7020 cactagatgg cactaactag tgtgacaggg ttacgagatg ccaagtgagc tggaatacca 7080 ctcactttat gtaaaggagc ggcctgcgtg ctgtctctta gctttattcc tttgtctagg 7140 tgcgatgctg cgtcacgcac aatgacatct agttctttgc ggatgcttta cgcaaagatg 7200 taggccagag gcacgtgatg ttgcccttcg cattattggt gggtgcacct aacgatgtga 7260 agcgagctcc acaagccctc tatataagga ggccatgtat tcaggttgca agcatgcacc 7320 acaacgcaag cttactcctg actaaggaaa taaacaaagt ttgtgcttga aacacacttc 7380 ttgtctaagt gcgagtagag cgcaagatcc tcttccgcgt cggcggcgat ccgccccccc 7440 ttcc 7444 //