ID FJ824808; SV 1; circular; genomic DNA; STD; VRL; 2591 BP. XX AC FJ824808; XX DT 13-APR-2009 (Rel. 100, Created) DT 13-APR-2009 (Rel. 100, Last updated, Version 1) XX DE Tomato severe rugose virus strain PJU-Sao Paulo segment DNA-A, complete DE sequence. XX KW . XX OS Tomato severe rugose virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2591 RA Nozaki D.N., Sakate R.K., Yuki V.A., Lima A.T.M., Zerbini F.M., Pavan M.A.; RT "Biological and molecular characterization of one isolate of Tomato severe RT rugose virus collected in pepper (Capsicum annuum) in Sao Paulo"; RL Summa Phytopathol. 0:0(2009). XX RN [2] RP 1-2591 RA Nozaki D.N., Sakate R.K., Pavan M.A.; RT ; RL Submitted (13-MAR-2009) to the INSDC. RL Producaoo Vegetal/Defesa Fitossaniaria, Universidade Estadual Paulista, Rua RL Jose Barbosa de Barros, n1780, Botucatu, Sao Paulo 18610-307, Brazil XX DR MD5; e69c5039cae3a7d8a105d3dbe7952d94. XX FH Key Location/Qualifiers FH FT source 1..2591 FT /organism="Tomato severe rugose virus" FT /segment="DNA-A" FT /host="Capsicum annuum" FT /strain="PJU-Sao Paulo" FT /mol_type="genomic DNA" FT /country="Brazil:Sao Paulo, Piraju" FT /collection_date="Jan-2005" FT /db_xref="taxon:158463" FT rep_origin join(2268..2591,1..140) FT /note="common region" FT gene 138..893 FT /gene="AV1" FT /gene_synonym="AR1" FT CDS 138..893 FT /codon_start=1 FT /gene="AV1" FT /gene_synonym="AR1" FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:Q3HM70" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q3HM70" FT /protein_id="ACO55136.1" FT /translation="MPKRDAPWRLTAGTSKVSRSVNYSPRAGYGPKYNKAAEWVNRPMY FT RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDESIKLKNHTNSVMFWLVRDRRPYSTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNNVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT gene complement(890..1288) FT /gene="AC3" FT /gene_synonym="AL3" FT CDS complement(890..1288) FT /codon_start=1 FT /gene="AC3" FT /gene_synonym="AL3" FT /product="Ren" FT /note="enhancer protein" FT /db_xref="GOA:C1KG76" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C1KG76" FT /protein_id="ACO55137.1" FT /translation="MDSRTGELITALQAENGVYIWEISNPLYFKINRVEDPMYTASRVY FT HVQIRFNHNLRRALHLHKSFLNFQIWTTSLTASGTTYLSRFKYLVLLYLDRLGVISINN FT VIRAVRFATDKSYVNAVLENHSIKFKFY" FT gene complement(1035..1424) FT /gene="AC2" FT /gene_synonym="AL2" FT CDS complement(1035..1424) FT /codon_start=1 FT /gene="AC2" FT /gene_synonym="AL2" FT /product="TrAP" FT /note="transactivator protein" FT /db_xref="GOA:C1KG77" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C1KG77" FT /protein_id="ACO55138.1" FT /translation="MRNSSSLTPPSIKVQHRAAKKRGIRRRRIDIECGCSIYVHIDCRG FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSNVHREQSLPRPNTVQPQPEESI FT ASPQELPQLPDMDDFTDSFWDDIFK" FT gene complement(1366..2424) FT /gene="AC1" FT /gene_synonym="AL1" FT CDS complement(1366..2424) FT /codon_start=1 FT /gene="AC1" FT /gene_synonym="AL1" FT /product="Rep protein" FT /db_xref="GOA:C1KG78" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C1KG78" FT /protein_id="ACO55139.1" FT /translation="MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKTLNTPTNKKFI FT KVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKDVALQIIREKLPEKFLFQF FT HNLNSNLDRIFTRAPEPWAPTFPLSSFTSVPREMQAWADDYFGRGAAARPERPISIIIE FT GDSRTGKTMWARALGAHNYLSGHLDFNPRVYSNHVEYNVIDDIAPHYLKLKHWKELLGA FT QKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKEENASLNNWTKHNAKFVFL FT NTPLYQGTTQSC" FT gene complement(2007..2270) FT /gene="AC4" FT CDS complement(2007..2270) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C1KG79" FT /protein_id="ACO55140.1" FT /translation="MKMGSLISTCFFNLRATTAAKINDSSTWSPQQGQHISIRTFRELS FT HRPTSNPMSTRTEILSSGGNSKSTEEVLEAVARQLTTLPQKP" XX SQ Sequence 2591 BP; 660 A; 532 C; 601 G; 798 T; 0 other; tttcaattaa agtaaagtga ttgtctgtgg cccaatcata ttgggcctgt cgagcttaga 60 tatttgtaac aacttaaggc ccaagttgtt aaacggctat aaattgaaca tacactttac 120 ttttgcttta attcaaaatg cctaagcgtg atgccccatg gcgtttaacg gcgggaactt 180 caaaggtttc ccgctctgtc aattattctc cccgtgcagg atatggaccc aaatataaca 240 aggccgctga gtgggtgaac aggcccatgt acaggaagcc caggatctac cgtactttga 300 gaggcccaga tgttcctaga ggctgtgaag ggccttgtaa ggttcagtct tacgagtctc 360 gccatgatgt ttcccatgtc gggaaggtga tttgtgtgtc tgacgttaca cgtggtaacg 420 gtattactca ccgtgttggt aagcgtttct gcgtgaagtc tgtatatatt ttagggaagg 480 tatggatgga cgagagcatc aagttgaaga atcacacaaa tagtgtgatg ttctggttgg 540 ttagagatcg gagaccttat tcgacaccta tggattttgg ccaggtgttc aacatgtttg 600 acaacgagcc tagcactgca actgttaaga acgatcttcg ggatcgtttt caggtcatgc 660 acaagtttta tgccaaggtt actggtggac agtatgccag taatgagcag gcattagtga 720 agcgcttttg gaaggtcaac aacaacgtag tctacaacca tcaggaggca gggaaatacg 780 agaatcatac tgagaacgcc ttgctattgt atatggcatg tactcatgcc tctaaccccg 840 tgtatgctac attgaaaatt cggatctatt tttatgattc gattactaat taataaaatt 900 taaattttat tgaatgattt tcgagtacag catttacata tgatttgtct gttgcgaaac 960 gaacagctct gattacatta ttaatggaaa taacgcctaa tcgatctaga tacaataaga 1020 ctaaatattt aaatctactt aaatatgtcg tcccagaagc tgtcagtgaa gtcgtccata 1080 tctggaagtt gaggaagctc ttgtggagat gcaatgctct cctcaggttg tggttgaacc 1140 gtatttggac gtggtagact ctgctcgcgg tgtacattgg atcctccact ctgtttatct 1200 tgaaatagag gggatttgat atctcccaaa tataaacgcc attctctgcc tgaagtgcag 1260 tgatgagttc ccctgtgcgt gaatccatgt cctctgcagt cgatgtgtac gtaaatagag 1320 cacccgcact ctatatcaat tcgtcgtctc ctgattcctc gttttttagc agctctgtgt 1380 tgtaccttga tagagggggg tgttaaggaa gacgaatttc gcattgtgct ttgtccaatt 1440 atttagactt gcattttctt ctttgtcgag gaaacattta tagctggccc cctcgccagg 1500 attgcaaagc acgatgcatg ggataccacc tttaatttga actggctttc cgtatttgca 1560 gtttgattgc caatcctttt gggccccaag caattctttc cagtgcttta actttagata 1620 gtgcggtgcg atgtcatcga tgacgttata ttcaacatga tttgaataaa ccctaggatt 1680 gaaatccagg tgtccactca aataattatg ggcccctaat gcacgtgccc acatcgtctt 1740 tcccgttcga gaatcacctt caatgatgat actaataggt cgttccggcc gcgcagcggc 1800 tcctctccca aaatagtcat ctgcccaagc ttgcatctct ctcggtacgc tagtgaaaga 1860 ggagagggga aacgtagggg cccatggctc cggagccctt gtaaatatcc tatctaaatt 1920 actatttaga ttgtgaaact gaaataagaa cttttcaggc agcttctcac ggattatctg 1980 caaggcgacg tctttggaag gtgcgttcaa ggcttctgcg gcagcgtcgt tagctgtctg 2040 gcaaccgcct ctagcacttc ttccgtcgat ttggaattcc ccccactcga tagtatctcc 2100 gtccttgtcg acataggatt tgacgtcgga cgatgactta gctctctgaa tgttcggatg 2160 gaaatgtgtt gaccttgttg gggagaccag gtcgaagaat cgttgatttt ggcagcagta 2220 gttgccctca aattgaagaa gcacgtggag atgaggctcc ccattttcat ggagctctct 2280 gcaaaccttg atgaacttct tatttgtagg agtgtttagg gtttttaatt gggaaagtgc 2340 ttcttctttc gataatgagc atttgggata tgtgaggaaa taattcttcg cttttatttg 2400 aaagcgcttt ggagctgatg gcatatttgt aaatatgact cttgctacca attggtagca 2460 gctctaaaac tcttatgaat tggtagttat ggtagctctt atatagtaga agttctttaa 2520 ggagatttct acacgtggcg gccatccgtt ataatattac cggatggccg cgcgattttt 2580 caccccttta g 2591 //