ID   FJ820183; SV 1; linear; genomic RNA; STD; VRL; 2434 BP.
XX
AC   FJ820183;
XX
DT   27-JAN-2011 (Rel. 107, Created)
DT   27-JAN-2011 (Rel. 107, Last updated, Version 1)
XX
DE   Pepino mosaic virus isolate 7561 RNA-dependent RNA polymerase (RdRp) gene,
DE   partial cds; and triple gene block protein 1 (TGBp1), triple gene block
DE   protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein
DE   (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-2434
RA   Cordoba-Selles M.C., Saval P., Herrera-Vasquez J.A., Jorda C.;
RT   "Pepino mosaic virus and Olpidium virulentus: agents associated with the
RT   occurrence of tomato collapse in Spain";
RL   Unpublished.
XX
RN   [2]
RP   1-2434
RA   Cordoba-Selles M.C.;
RT   ;
RL   Submitted (11-MAR-2009) to the INSDC.
RL   IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
DR   MD5; f0a06dd35f010dfd0c40a1c5bff3fa39.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2434
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="7561"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:112229"
FT   gene            <1..485
FT                   /gene="RdRp"
FT   CDS             <1..485
FT                   /codon_start=3
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="ORF1"
FT                   /db_xref="GOA:E8Z9G3"
FT                   /db_xref="UniProtKB/TrEMBL:E8Z9G3"
FT                   /protein_id="ACZ28117.1"
FT                   /translation="FDANTECSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRK
FT                   LQNLLKLTSKTLYPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAAR
FT                   SYAIDMKHSYQMGDQLHDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT   gene            511..1215
FT                   /gene="TGBp1"
FT   CDS             511..1215
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /note="ORF2"
FT                   /db_xref="GOA:E8Z9G4"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:E8Z9G4"
FT                   /protein_id="ACZ28118.1"
FT                   /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLIIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT                   SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT                   LTIGELNARSDS"
FT   gene            1196..1567
FT                   /gene="TGBp2"
FT   CDS             1196..1567
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /note="ORF3"
FT                   /db_xref="GOA:E8Z9G5"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:E8Z9G5"
FT                   /protein_id="ACZ28119.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISHNTHQH
FT                   HCYNTHSATQTGQSVPGHH"
FT   gene            1419..1667
FT                   /gene="TGBp3"
FT   CDS             1419..1667
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /note="ORF4"
FT                   /db_xref="GOA:E8Z9G6"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:E8Z9G6"
FT                   /protein_id="ACZ28120.1"
FT                   /translation="MSSYLSSFLHWVLSSPINLVLALAIILTSIIATTHILQPKQVNQC
FT                   QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT   gene            1713..2426
FT                   /gene="CP"
FT   CDS             1713..2426
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:E8Z9G7"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:E8Z9G7"
FT                   /protein_id="ACZ28121.1"
FT                   /translation="MENQPTASNSSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 2434 BP; 736 A; 587 C; 444 G; 667 T; 0 other;
     catttgacgc taacactgag tgttcgattg catacactgc cacaagattc catattgaca        60
     atactgttaa gcaagtgtat gccggtgacg acatggcatt agatggagtt gtgagtgaaa       120
     agaaatcatt caggaagtta caaaatctac taaaactcac ttcaaaaacg ctgtacccaa       180
     aacaggttaa aggggattac gctgaatttt gtggttggac tttcacacca gggggtataa       240
     ttaaaaatcc acttaaaatg catgcctcaa ttatgctgca agaggccatt ggcaatctgc       300
     acacagcagc cagatcttat gcaattgaca tgaagcattc ataccaaatg ggtgaccaac       360
     tgcatgacta cctaaccccc gatgaagctg aacaacattt cctagctgtg agaaagcttc       420
     acaaactcca tcaaggcgag gccatgcgtc ttggggagaa aagtccacca agatcaaccc       480
     attaaggggt taagttttcc ccagtttgaa atggaaagat caactttgat caatttactt       540
     ctgttacaca aatttgaaca caagattaac actgaaggaa tcattgttgt gcacggaatt       600
     gctggaactg ggaaaaccac attgcttagg actttatttt ctgcataccc tagcttaatt       660
     ataggttcac ctaggccttg ttacttagat aaagctaata aaatttcaca agtttgcctt       720
     tcttgttttc caaatacctt gtgtgacatt gttgacgagt accatctctt agaaagtttt       780
     cctgaaccaa aactagccat ttttggtgac ccctgtcagt gcacttacat tgaaaggttg       840
     agaacaccca actacacatc cttcagaaca caccgatttg gcaaatccac tgctgctcta       900
     ctaaacaagt tatttgatct taacattgag tcagtcaaag cacaagacga cacagtagaa       960
     tactttgatc ctttcgcagt ggacccctct gaacacattt ctgcttcaga aaaagaagtt      1020
     ttggaatttg taggtgatca agttgagact acaagctctg aagaactagc tggtctcgag      1080
     tttagtgaag ttactttcta ctgtaccaca cttgctggtg ctgttcaaga aaatcctgcc      1140
     aaaaccttca tttcactcac tagacacact tcaaagctca caattggtga actaaatgcc      1200
     aggtctgact cctagagctg atcttactga cacgtataaa atcattgcta tagcctttct      1260
     actgtcagct tgcatttact tccaaaacag tcattatcaa ccagttgcag gtgataactt      1320
     gcacagacta ccctttggcg gtcagtatca agacggaact aagaagattt cttactttcc      1380
     gcagcaacaa tcctactttc actcaggaaa caagcttaat gtcctcatac ttatcttcat      1440
     tcttacactg ggtattgtcc tcaccaataa atttagtttt agcattagcc ataatactca      1500
     ccagcatcat tgctacaaca cacattctgc aacccaaaca ggtcaatcag tgccaggtca      1560
     tcattgacgg tgcagccata gttataacaa attgtccaaa cacacccgaa gttcttaaag      1620
     caatcaactt ctccccttgg aacgggttaa gttttcctca attgtgaaat catatttgtt      1680
     atctagttaa attcaaacaa tttaactcaa ctatggaaaa ccaacctaca gcttccaact      1740
     catcagacgt accaccaact gctgctcaag ctggtgccca gagcccagcc gacttctcaa      1800
     atcctaatac agctccctcc ctaagtgatt tgaagaagat caaatacgtg tcaactgtca      1860
     cttcagttgc cacgcctgct gaaattgagg cccttggcaa gatctttact gccatgggtt      1920
     tagcagccaa tgagaccgga cctgccatgt gggacctcgc tcgagcttat gctgatgtgc      1980
     aaagttcaaa atctgcacaa cttataggtg ccacaccatc caaccctgct ttgtctagac      2040
     gtgcacttgc tgcacagttt gatcgtatca atatcacacc cagacaattc tgcatgtatt      2100
     ttgcaaaaat tgtttggaac atactgttag acagcaatgt gccacctgcc aactgggcaa      2160
     aattgggcta tcaggaagat accaagtttg ctgcttttga cttctttgat ggagtcacaa      2220
     atccagctag tctacagcct gcagatggcc taatcaggca gcccaatgaa aaagagcttg      2280
     ctgctcactc ggttgctaaa tatggtgccc ttgcccgcca gaaaatatcc actggtaact      2340
     acatcaccac ccttggtgaa gttacacgtg gtcacatggg cggcgccaac actatgtacg      2400
     caattgatgc acctcctgaa ctttaaacac tcga                                  2434
//