ID FJ820182; SV 1; linear; genomic RNA; STD; VRL; 2297 BP. XX AC FJ820182; XX DT 27-JAN-2011 (Rel. 107, Created) DT 27-JAN-2011 (Rel. 107, Last updated, Version 1) XX DE Pepino mosaic virus isolate 7348 RNA-dependent RNA polymerase (RdRp) gene, DE partial cds; triple gene block protein 1 (TGBp1), triple gene block protein DE 2 (TGBp2), and triple gene block protein 3 (TGBp3) genes, complete cds; and DE coat protein (CP) gene, partial cds. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-2297 RA Cordoba-Selles M.C., Saval P., Herrera-Vasquez J.A., Jorda C.; RT "Pepino mosaic virus and Olpidium virulentus: agents associated with the RT occurrence of tomato collapse in Spain"; RL Unpublished. XX RN [2] RP 1-2297 RA Cordoba-Selles M.C.; RT ; RL Submitted (11-MAR-2009) to the INSDC. RL IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain XX DR MD5; 0337490ead63682fcd6cbdbabf92c19f. XX FH Key Location/Qualifiers FH FT source 1..2297 FT /organism="Pepino mosaic virus" FT /host="Solanum lycopersicum" FT /isolate="7348" FT /mol_type="genomic RNA" FT /country="Spain" FT /collection_date="2005" FT /db_xref="taxon:112229" FT gene <1..474 FT /gene="RdRp" FT CDS <1..474 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /note="ORF1" FT /db_xref="GOA:E8Z9F8" FT /db_xref="UniProtKB/TrEMBL:E8Z9F8" FT /protein_id="ACZ28112.1" FT /translation="NTECSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQN FT LLKLTSKTLYPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYA FT IDMKHSYQMGDQLHDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH" FT gene 500..1204 FT /gene="TGBp1" FT CDS 500..1204 FT /codon_start=1 FT /gene="TGBp1" FT /product="triple gene block protein 1" FT /note="ORF2" FT /db_xref="GOA:Q334F6" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q334F6" FT /protein_id="ACZ28113.1" FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK FT LTIGELNARSDS" FT gene 1185..1556 FT /gene="TGBp2" FT CDS 1185..1556 FT /codon_start=1 FT /gene="TGBp2" FT /product="triple gene block protein 2" FT /note="ORF3" FT /db_xref="GOA:Q699Z7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q699Z7" FT /protein_id="ACZ28114.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH FT HCYNTHSATQTGQSVPGHH" FT gene 1408..1656 FT /gene="TGBp3" FT CDS 1408..1656 FT /codon_start=1 FT /gene="TGBp3" FT /product="triple gene block protein 3" FT /note="ORF4" FT /db_xref="GOA:Q334E8" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q334E8" FT /protein_id="ACZ28115.1" FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL" FT gene 1702..>2297 FT /gene="CP" FT CDS 1702..>2297 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="ORF5" FT /db_xref="GOA:E8Z9G2" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:E8Z9G2" FT /protein_id="ACZ28116.1" FT /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFIAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGA" XX SQ Sequence 2297 BP; 698 A; 539 C; 419 G; 641 T; 0 other; aacactgagt gttcaattgc atacactgcc acaagattcc atattgacaa tactgttaag 60 caagtgtatg ccggtgacga catggcatta gatggagttg tgagtgaaaa gaaatcattc 120 aggaagttac aaaatttact aaaactcact tcaaaaacgc tgtacccaaa acaggttaaa 180 ggggattacg ctgaattttg tggttggact ttcacaccag ggggtataat taaaaatcca 240 cttaaaatgc atgcctcaat tatgctgcaa gaggccattg gcaatctgca cacagcagcc 300 agatcttatg caattgacat gaagcattca taccaaatgg gtgaccaact gcatgactac 360 ctaacacccg atgaagctga acaacatttc ctagctgtga gaaagcttca caaactccat 420 caaggcgagg ccatgcgtct tggggagaaa agtccaccaa gatcaaccca ttaaggggtt 480 aagtttttcc cagtttgaaa tggaaagatc aactttgatc aatttacttc tgttacacaa 540 atttgaacac aagattaaca ctgaaggaat cattgttgtg cacggaattg ctggaactgg 600 gaaaaccaca ttgcttagga ctttattttc tgcataccct agcctagtta taggttcacc 660 taggccttgt tacttagata aagctaataa aatttcacaa gtttgccttt cttgttttcc 720 aaataccttg tgtgacattg ttgacgagta ccatctctta gaaagttttc ctgaaccaaa 780 actagccatt tttggtgacc cctgtcagtg cacttacatt gaaaggttga gaacacccaa 840 ctacacatcc ttcagaacac accgatttgg caaatccact gctgctctac taaacaagtt 900 atttgatctt aacattgagt cagtcaaagc acaagacgac acagtagaat actttgatcc 960 tttcgcagtg gacccctctg aacacatttc tgcttcagaa aaagaagttt tggaatttgt 1020 aggtgatcaa gttgagacta caagctctga agaactagct ggtctcgagt ttagtgaagt 1080 tactttctac tgtaccacac ttgctggtgc tgttcaagaa aatcctgcca aaaccttcat 1140 ttcactcact agacacactt caaagctcac aattggtgaa ctaaatgcca ggtctgactc 1200 ctagagctga tcttactgac acgtataaaa tcattgctat agcctttcta ctgtcagctt 1260 gcatttactt ccaaaacagt cattatcaac cagttgcagg tgataacttg cacagactac 1320 cctttggtgg tcagtatcaa gacggaacta agaagatttc ttactttccg cagcaacaat 1380 cctactttca ctcaggaaac aagcttaatg tcctcatact tatcttcatt cttacactgg 1440 gtattgtcct caccaataaa tttagtttta gcattagccg taatactcac cagcatcatt 1500 gctacaacac acattctgca acccaaacag gtcaatcagt gccaggtcat cattgacggt 1560 gcagccatag ttataacaaa ttgtccaaac acacccgaag ttcttaaagc aatcaacttc 1620 tccccttgga acgggttaag ttttcctcaa ttgtgaaatc atatttgtta tctagttaaa 1680 ttcaaacaat ttaactcaac tatggaaaac caacctacag cttctaaccc atcagatgta 1740 ccaccaactg ctgctcaagc tggtgcccag agcccagccg acttctcaaa tcctaataca 1800 gctccttccc taagtgattt gaagaagatc aaatacgtgt caactgtcac ttcagttgcc 1860 acgcctgctg aaattgaggc ccttggcaag atctttattg ccatgggttt agcagccaat 1920 gagaccggac ctgccatgtg ggacctcgct cgtgcttatg ctgatgtgca aagttcaaaa 1980 tctgcacaac ttataggtgc cacaccatcc aaccctgctt tgtctagacg tgcacttgct 2040 gcacagtttg atcgtatcaa tatcacaccc agacaattct gcatgtattt tgcaaaaatt 2100 gtttggaaca tactgttaga cagcaatgtg ccacctgcca actgggcaaa attgggctat 2160 caggaagata ccaagtttgc tgcttttgac ttctttgatg gagtcacaaa tccagctagt 2220 ctacagcctg cagatggcct aatcaggcag cccaatgaaa aagagcttgc tgctcactcg 2280 gttgctaaat atggtgc 2297 //