ID   FJ820177; SV 1; linear; genomic RNA; STD; VRL; 2426 BP.
XX
AC   FJ820177;
XX
DT   27-JAN-2011 (Rel. 107, Created)
DT   27-JAN-2011 (Rel. 107, Last updated, Version 1)
XX
DE   Pepino mosaic virus isolate 6190 RNA-dependent RNA polymerase (RdRp) gene,
DE   partial cds; and triple gene block protein 1 (TGBp1), triple gene block
DE   protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein
DE   (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-2426
RA   Cordoba-Selles M.C., Saval P., Herrera-Vasquez J.A., Jorda C.;
RT   "Pepino mosaic virus and Olpidium virulentus: agents associated with the
RT   occurrence of tomato collapse in Spain";
RL   Unpublished.
XX
RN   [2]
RP   1-2426
RA   Cordoba-Selles M.C.;
RT   ;
RL   Submitted (11-MAR-2009) to the INSDC.
RL   IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
DR   MD5; 68bc59a85a04b222a3425cc97a3c650e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2426
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="6190"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="2004"
FT                   /db_xref="taxon:112229"
FT   gene            <1..485
FT                   /gene="RdRp"
FT   CDS             <1..485
FT                   /codon_start=3
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="ORF1"
FT                   /db_xref="GOA:E8Z9D3"
FT                   /db_xref="UniProtKB/TrEMBL:E8Z9D3"
FT                   /protein_id="ACZ28087.1"
FT                   /translation="FDANTECSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRK
FT                   LQNLLKLTSKTLYPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAAR
FT                   SYAIDMKHSYQMGDQLHDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT   gene            511..1215
FT                   /gene="TGBp1"
FT   CDS             511..1215
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /note="ORF2"
FT                   /db_xref="GOA:E8Z9D4"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:E8Z9D4"
FT                   /protein_id="ACZ28088.1"
FT                   /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT                   SASEKEVLEFVGDQVKTTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT                   LTIGELNARSDS"
FT   gene            1196..1567
FT                   /gene="TGBp2"
FT   CDS             1196..1567
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /note="ORF3"
FT                   /db_xref="GOA:E8Z9D5"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:E8Z9D5"
FT                   /protein_id="ACZ28089.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVITNKFSFSISRNTYQH
FT                   HCYNTHSATQTGQSVPGHH"
FT   gene            1419..1667
FT                   /gene="TGBp3"
FT   CDS             1419..1667
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:E8Z9D6"
FT                   /protein_id="ACZ28090.1"
FT                   /translation="MSLYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT                   QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT   gene            1713..2426
FT                   /gene="CP"
FT   CDS             1713..2426
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:E8Z9D7"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:E8Z9D7"
FT                   /protein_id="ACZ28091.1"
FT                   /translation="MENQPTASNPSNVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 2426 BP; 733 A; 579 C; 443 G; 671 T; 0 other;
     catttgacgc taacactgag tgttcgattg catacactgc cacaagattc catattgaca        60
     atactgttaa gcaagtgtat gccggtgacg acatggcatt agatggagtt gtgagtgaaa       120
     agaaatcatt caggaagtta caaaatctac taaaactcac ttcaaaaacg ctgtacccaa       180
     agcaggttaa aggggattac gctgaatttt gtggttggac tttcacacca gggggtataa       240
     ttaaaaatcc acttaaaatg catgcctcaa ttatgctgca agaagccatt ggtaatctgc       300
     acacagcagc cagatcttat gcaattgaca tgaagcattc ataccaaatg ggtgaccaac       360
     tgcatgacta cctaaccccc gatgaagctg aacaacattt cctagctgtg agaaagcttc       420
     acaaactcca tcaaggcgag gccatgcgtc ttggggagaa aagtccacca agatcaaccc       480
     attaaggggt taagttttcc ccagtttgaa atggaaagat caaccttgat caatttactt       540
     ctgttacaca aatttgaaca caagattaac actgaaggaa tcattgttgt gcacggaatt       600
     gctggaactg ggaaaaccac attgcttagg actttatttt ctgcataccc tagcttagtt       660
     ataggttcac ctaggccttg ttacttagat aaagctaata aaatttcaca agtttgcctt       720
     tcttgttttc caaatacctt gtgtgacatt gttgacgagt accatctctt agaaagtttt       780
     cctgaaccaa aactagccat ttttggtgac ccctgtcagt gcacttacat tgaaaggttg       840
     agaacaccca actacacatc cttcagaaca caccgatttg gcaaatccac tgctgctcta       900
     ctaaacaagt tatttgatct taacattgag tcagtcaaag cacaagacga cacagtagaa       960
     tactttgatc ctttcgcagt ggacccctct gaacacattt ctgcttcaga aaaagaagtt      1020
     ttggaatttg taggtgatca agttaagact acaagctctg aagaactagc tggtctcgag      1080
     tttagtgaag ttactttcta ctgtaccaca cttgctggtg ctgttcaaga aaatcctgcc      1140
     aaaaccttca tttcactcac tagacacact tcaaagctca caattggtga actaaatgcc      1200
     aggtctgact cctagagctg atcttactga cacgtataaa atcattgcta tagcctttct      1260
     actgtcagct tgcatttact tccaaaacag tcattatcaa ccagttgcag gtgataattt      1320
     gcacagacta ccctttggtg gtcagtatca agacggaact aagaagattt cttactttcc      1380
     gcagcaacaa tcctactttc actcaggaaa caagcttaat gtccttatac ttatcttcat      1440
     tcttacactg ggtattgtca tcaccaataa atttagtttt agcattagcc gtaatactta      1500
     ccagcatcat tgctacaaca cacattctgc aacccaaaca ggtcaatcag tgccaggtca      1560
     tcattgacgg tgcagccata gttataacaa attgcccaaa cacacccgaa gttcttaaag      1620
     caatcaactt ctccccttgg aacgggttaa gttttcctca attgtgaaat catatttgtt      1680
     atctagttaa attcaaacaa tttaactcaa ctatggaaaa ccaacctaca gcttctaacc      1740
     catcaaatgt accaccaact gctgctcaag ctggtgccca gagcccagcc gacttctcaa      1800
     atcctaatac agctccttcc ctaagtgatt tgaagaagat caaatacgtg tcaactgtca      1860
     cttcagttgc cacgcctgct gaaattgagg cccttggcaa gatcttcact gccatgggtt      1920
     tagcagccaa tgagaccgga cctgccatgt gggacctcgc tcgtgcttat gctgatgtgc      1980
     aaagttcaaa atctgcacaa cttataggtg ccacaccatc caaccctgct ttgtctagac      2040
     gtgcacttgc tgcacagttt gatcgtatca atatcacacc cagacaattc tgcatgtatt      2100
     ttgcaaaaat tgtttggaac atactgttag acagcaatgt gccacctgcc aactgggcaa      2160
     aattgggcta tcaggaagat accaagtttg ctgcttttga cttctttgat ggagtcacaa      2220
     atccagctag tctacagcct gcagatggcc taatcaggca gcccaatgaa aaagagcttg      2280
     ctgctcactc ggttgctaaa tatggtgccc ttgcccgcca gaaaatatcc actggtaact      2340
     acatcaccac ccttggtgaa gttacacgtg gtcacatggg cggcgccaac actatgtacg      2400
     caattgatgc acctcctgaa ctttaa                                           2426
//