ID   FJ820176; SV 1; linear; genomic RNA; STD; VRL; 2430 BP.
XX
AC   FJ820176;
XX
DT   27-JAN-2011 (Rel. 107, Created)
DT   27-JAN-2011 (Rel. 107, Last updated, Version 1)
XX
DE   Pepino mosaic virus isolate 5577 RNA-dependent RNA polymerase (RdRp) gene,
DE   partial cds; and triple gene block protein 1 (TGBp1), triple gene block
DE   protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein
DE   (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-2430
RA   Cordoba-Selles M.C., Saval P., Herrera-Vasquez J.A., Jorda C.;
RT   "Pepino mosaic virus and Olpidium virulentus: agents associated with the
RT   occurrence of tomato collapse in Spain";
RL   Unpublished.
XX
RN   [2]
RP   1-2430
RA   Cordoba-Selles M.C.;
RT   ;
RL   Submitted (11-MAR-2009) to the INSDC.
RL   IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
DR   MD5; 221b9178c7884a8e28441d8b88fc2d0f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2430
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="5577"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="2002"
FT                   /db_xref="taxon:112229"
FT   gene            <1..485
FT                   /gene="RdRp"
FT   CDS             <1..485
FT                   /codon_start=3
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="ORF1"
FT                   /db_xref="GOA:E8Z9C8"
FT                   /db_xref="UniProtKB/TrEMBL:E8Z9C8"
FT                   /protein_id="ACZ28082.1"
FT                   /translation="FDANTECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKK
FT                   LQNQLKLTSKTLFPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAAR
FT                   SYAIDMKHSYQMGDELHNYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH"
FT   gene            511..1215
FT                   /gene="TGBp1"
FT   CDS             511..1215
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /note="ORF2"
FT                   /db_xref="GOA:Q3BLN1"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q3BLN1"
FT                   /protein_id="ACZ28083.1"
FT                   /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFLEPKLAIFGDPCQC
FT                   TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI
FT                   SASEEEVLGFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK
FT                   LTIGELNARSNS"
FT   gene            1196..1567
FT                   /gene="TGBp2"
FT   CDS             1196..1567
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q8JJH7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JJH7"
FT                   /protein_id="ACZ28084.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH
FT                   SCYNTHSATNNTQPLSGHH"
FT   gene            1419..1673
FT                   /gene="TGBp3"
FT   CDS             1419..1673
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:E8Z9D1"
FT                   /protein_id="ACZ28085.1"
FT                   /translation="MSSYLFSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT                   QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN"
FT   gene            1712..2425
FT                   /gene="CP"
FT   CDS             1712..2425
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:Q8JJF2"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JJF2"
FT                   /protein_id="ACZ28086.1"
FT                   /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 2430 BP; 730 A; 588 C; 446 G; 666 T; 0 other;
     catttgatgc caacacagaa tgttcaatag catataccgc tacgagatac catcttgatt        60
     ctacagtcaa gcaggtttat gctggagatg atatggcatt agatggagtt gtccaagaaa       120
     aaccctcctt taaaaaacta cagaaccagc ttaaactcac ctcaaagaca ctatttccaa       180
     aacaggttaa aggtgattat gctgaattct gtggttggac tttcactcct ggtggtatca       240
     ttaaaaaccc tttgaaaatg catgcttcca ttatgttgca agaggcaatc ggcaatttac       300
     acactgctgc cagatcatat gccattgaca tgaagcattc ataccaaatg ggtgatgagc       360
     tgcacaatta cttaacacca gatgaagctg aacaacactt ccttgctgtt cggaagttgc       420
     acaagttaca ccaaggagaa gcaatgagac ttggtgaaaa gagccctcca aaagcaacac       480
     attgaggggt taagttttcc ccagttcgaa atggaaagat caactctgat taatttactt       540
     caattgcacc acttcgagcc aaaactcagt gttgaaggaa tcatagttgt gcacggaatt       600
     gcaggcactg ggaaaaccac tttacttagg actttatttt ctgcttaccc tagcttagtt       660
     ataggttcac ctaggccttg ctatttagat aaacaaaaca aaatttcaca agtttgctta       720
     tcttgctttc ccaataccca ttgtgatatt gtcgatgagt atcatttgct agaaagtttt       780
     ctagaaccaa aattggctat ctttggtgac ccctgtcaat gcacatacat tgagagactt       840
     agagtcccac attacacttc cttcagaact catagatttg gaaagtcaac tgctgagatt       900
     ttgaacaaac tgtttgacct taatatagtc tcagttaaga aagaagacga catcgttgaa       960
     ttctttaacc cttttgaagt tgaccccact gagcatatct ctgcctctga agaagaagtc      1020
     ttgggctttg tttctgacca agtggtgacc actagctcag aggaactagc aggacttgag      1080
     tttgcagaaa caactttcta ctgcacaaca ttggccgcag ctgttgctga aaatcctgct      1140
     aagactttca tctctctgac tagacacacc cacaaactca ctattggtga actaaatgcc      1200
     aggtctaact cctagagctg acctcactga cacatacaaa atcattgcca ttgctttctt      1260
     gttgtcagct tgcatttact tccaaaatag ccactaccaa cctgttgctg gagacaactt      1320
     gcaccgtttg ccttttggtg gccaatatca agacggcacc aaaaagatat cttattttcc      1380
     acaacagcag tcatactttc attctggaaa caaattaaat gtcctcatac ttattttcat      1440
     tctcacattg ggtattgtcc tcaccaataa atttagtttt agctttagtc gtactactca      1500
     ccagcattct tgctataaca cacattcagc aaccaacaat acacaaccat tgtcaggtca      1560
     tcattgacgg tgctgcaata gtcataacaa attgtgagaa cacaccagaa gtgcttaaag      1620
     caatcaactt ctccccttgg aacgggttaa gttttcctaa atttgaaaat taatattgag      1680
     tgttcacaaa aatcaacttc aataaacaat catgcctgac acaacacctg ttgctgccac      1740
     ttcaagtgca ccacccacag ccaaagatgc tggtgccaaa gctccttctg acttctcaaa      1800
     tcccaataca gctcctagtc tcagtgattt gaagaaagtc aagtatgtct ccaccgtgac      1860
     ctctgtggcc acaccagctg aaattgaagc cctaggcaaa atcttcaccg ctatgggcct      1920
     tgccgccaat gagactggtc cggccatgtg ggatctagct cgtgcatatg ctgatgtgca      1980
     gagttctaaa tcggcacagc tgattggagc taccccttcc aaccctgcac tatcacgccg      2040
     agcccttgct gctcagtttg atcgaatcaa tataaccccc aggcaatttt gcatgtactt      2100
     tgccaaagtt gtttggaaca tacttctcga cagcaacatt ccaccagcaa attgggccaa      2160
     acttggttac caagaagata caaaatttgc tgcatttgac ttcttcgatg gagtcaccaa      2220
     ccctgccagc ctgcagcctg ctgatggtct tatcaggcag ccaaatgaga aagaactagc      2280
     tgctcactct gtagctaagt acggcgcctt ggctaggcaa aagatctcca caggtaatta      2340
     tattaccaca cttggagaag tcacacgtgg acacatggga ggagctaaca ccatgtacgc      2400
     gatagacgcg ccccctgaac tttaaacact                                       2430
//