ID   FJ820175; SV 1; linear; genomic RNA; STD; VRL; 2419 BP.
XX
AC   FJ820175;
XX
DT   27-JAN-2011 (Rel. 107, Created)
DT   27-JAN-2011 (Rel. 107, Last updated, Version 1)
XX
DE   Pepino mosaic virus isolate 5251 RNA-dependent RNA polymerase (RdRp) gene,
DE   partial cds; and triple gene block protein 1 (TGBp1), triple gene block
DE   protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein
DE   (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-2419
RA   Cordoba-Selles M.C., Saval P., Herrera-Vasquez J.A., Jorda C.;
RT   "Pepino mosaic virus and Olpidium virulentus: agents associated with the
RT   occurrence of tomato collapse in Spain";
RL   Unpublished.
XX
RN   [2]
RP   1-2419
RA   Cordoba-Selles M.C.;
RT   ;
RL   Submitted (11-MAR-2009) to the INSDC.
RL   IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
DR   MD5; 8bd0b483eee125c99908fc3e71de915a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2419
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="5251"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="2001"
FT                   /db_xref="taxon:112229"
FT   gene            <1..468
FT                   /gene="RdRp"
FT   CDS             <1..468
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="ORF1"
FT                   /db_xref="GOA:E8Z9C3"
FT                   /db_xref="UniProtKB/TrEMBL:E8Z9C3"
FT                   /protein_id="ACZ28077.1"
FT                   /translation="ECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKKLQNKL
FT                   KLTSKTLFPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAID
FT                   MKHSYQMGDELHNYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH"
FT   gene            494..1198
FT                   /gene="TGBp1"
FT   CDS             494..1198
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /note="ORF2"
FT                   /db_xref="GOA:Q3BLF9"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q3BLF9"
FT                   /protein_id="ACZ28078.1"
FT                   /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIIEFFNPFEVDPTEHI
FT                   SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK
FT                   LTIGELNARSNS"
FT   gene            1179..1550
FT                   /gene="TGBp2"
FT   CDS             1179..1550
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q8JJH7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JJH7"
FT                   /protein_id="ACZ28079.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH
FT                   SCYNTHSATNNTQPLSGHH"
FT   gene            1402..1656
FT                   /gene="TGBp3"
FT   CDS             1402..1656
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JV10"
FT                   /protein_id="ACZ28080.1"
FT                   /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT                   QVTIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN"
FT   gene            1695..2408
FT                   /gene="CP"
FT   CDS             1695..2408
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:Q8JJF2"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JJF2"
FT                   /protein_id="ACZ28081.1"
FT                   /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 2419 BP; 731 A; 588 C; 443 G; 657 T; 0 other;
     gaatgttcga tagcatatac tgctacaaga taccatcttg attctacagt caagcaggtt        60
     tatgctggag atgatatggc attagatgga gttgtccaag aaaaaccctc ttttaaaaaa       120
     ctacagaaca agcttaaact cacctcaaag acactatttc caaaacaggt taaaggtgat       180
     tatgctgaat tctgtggttg gactttcact cctggtggta tcattaaaaa ccctttgaaa       240
     atgcatgctt ccattatgtt gcaagaggca atcggcaatt tacacactgc tgccagatca       300
     tatgccattg acatgaagca ttcataccaa atgggtgatg aactgcacaa ttacttaaca       360
     ccagatgaag ctgaacaaca cttccttgct gttcggaagt tgcacaagtt acaccaagga       420
     gaagcaatga gacttggtga aaagagccct ccaaaagcaa cacattgagg ggttaagttt       480
     tccccagttc gaaatggaaa gatcgactct gattaattta cttcaattgc accacttcga       540
     gccaaaactc agtgttgaag gaatcatagt tgtgcacgga attgcaggca ctgggaaaac       600
     cactttactt aggactttat tttctgctta ccctagctta gttataggtt cacctaggcc       660
     ttgctattta gataaacaaa acaaaatttc acaagtttgc ttatcttgct ttcccaatac       720
     ccattgtgat attgtcgatg agtatcattt gctagaaagt tttccagaac caaaattggc       780
     tatctttggt gacccctgtc aatgcacata cattgagaga cttagagtcc cacattacac       840
     ttccttcaga actcatagat ttggaaagtc aactgctgag attttgaaca aactgtttga       900
     tcttaatata gtctcagtta agaaagaaga cgacatcatt gaattcttta acccttttga       960
     agttgacccc actgagcata tctctgcctc tgaagaagaa gtcttggact ttgtttctga      1020
     ccaagtggtg accactagct cagaggaact agcaggactt gagtttgcag aaacaacttt      1080
     ctactgcaca acattggccg cagctgttgc tgaaaatcct gctaagactt tcatctctct      1140
     gactagacac acccacaaac tcaccattgg ggaactaaat gccaggtcta actcctagag      1200
     ctgacctcac tgacacatac aaaatcattg ccattgcttt cttgttgtca gcttgcattt      1260
     acttccaaaa tagccactac caacctgttg ctggagacaa cttgcaccgt ttgccttttg      1320
     gtggccaata tcaagacggc accaaaaaga tatcttattt cccacaacag cagtcatact      1380
     ttcattctgg aaacaaatta aatgtcctca tacttatctt cattctcaca ttgggtattg      1440
     tcctcaccaa taaatttagt tttagcttta gtcgtactac tcaccagcat tcttgctata      1500
     acacacattc agcaaccaac aatacacaac cattgtcagg tcaccattga cggtgctgca      1560
     atagtcataa caaattgtga gaacacacca gaagtgctta aagcaatcaa cttctcccct      1620
     tggaacgggt taagttttcc taaatttgaa aattaatatt gagtgttcac aaaaatcaac      1680
     ttcaataaac aatcatgcct gacacaacac ctgttgctgc cacttcaagt gcaccaccca      1740
     cagccaaaga tgctggtgcc aaagctcctt ctgacttctc aaatcccaat acagctccta      1800
     gtctcagtga tttgaagaaa gtcaagtatg tctccaccgt gacctctgtg gccacaccag      1860
     ctgaaattga agccctaggc aaaatcttca ccgctatggg ccttgccgcc aatgagactg      1920
     gtccggccat gtgggatcta gctcgtgcat atgctgatgt gcagagttct aaatcggcac      1980
     agctgatcgg agctacccct tccaaccctg cactatcacg ccgagccctt gctgctcagt      2040
     ttgatcgaat caatataacc cccaggcaat tttgcatgta ctttgccaaa gttgtttgga      2100
     acatacttct cgacagcaac attccaccag caaattgggc caaacttggt taccaagaag      2160
     atacaaaatt tgctgcattt gacttcttcg atggagtcac caaccctgcc agcctgcagc      2220
     ctgctgatgg tcttatcagg cagccaaatg agaaagaact agctgctcac tccgtagcta      2280
     agtacggcgc cttggctagg caaaagatct ccacaggtaa ttatattact acacttggag      2340
     aagtcacacg cggacacatg ggaggagcta acaccatgta cgcgatagac gcaccccctg      2400
     aactttaaac actcgaaac                                                   2419
//