ID FJ817425; SV 1; circular; genomic DNA; STD; VRL; 2763 BP. XX AC FJ817425; XX DT 05-APR-2009 (Rel. 100, Created) DT 05-APR-2009 (Rel. 100, Last updated, Version 1) XX DE Honeysuckle yellow vein virus isolate HYVVNZ1, complete genome. XX KW . XX OS Honeysuckle yellow vein virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2763 RA Harper S.J., Guy P.L.; RT "Complete genome sequence of a Honeysuckle yellow vein virus isolate from RT New Zealand"; RL Unpublished. XX RN [2] RP 1-2763 RA Harper S.J., Guy P.L.; RT ; RL Submitted (10-MAR-2009) to the INSDC. RL IDC-PHEL, Ministry of Agriculture and Forestry, 231 Morrin Road, St. Johns, RL Auckland 1140, New Zealand XX DR MD5; 658cfefdbb0a8e9e1faf4ccabaf37034. XX FH Key Location/Qualifiers FH FT source 1..2763 FT /organism="Honeysuckle yellow vein virus" FT /host="Lonicera japonica" FT /isolate="HYVVNZ1" FT /mol_type="genomic DNA" FT /country="New Zealand" FT /isolation_source="leaf" FT /collected_by="P.L. Guy" FT /collection_date="04-Jun-2003" FT /db_xref="taxon:240865" FT gene 138..488 FT /gene="AV2" FT CDS 138..488 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:C1KDY9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:C1KDY9" FT /protein_id="ACO35599.1" FT /translation="MWDPLVNDFPETVHGFRCMLAVKYLLLVESTYSPDTVGYDLVRDL FT IGVVRAKNYVEASCRYRNFHTRLQGTAPSELRQPVCQPCECPHCPRHKQKEIMGSAAHV FT SEAQDVQNVQKS" FT gene 298..1071 FT /gene="AV1" FT CDS 298..1071 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:C1KDZ0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:C1KDZ0" FT /protein_id="ACO35600.1" FT /translation="MSKRPADIGIFTPVSRVRRRLNFDSPYVNRASAPIALVTNKRRSW FT AQRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFETKNAVGHSGTLLCVSDITRGNGLTH FT RVGKRFCIKSVYIIGKIWMDENIKTKNHTNNMLFWLVRDRRPGSAPYGFHEAFNMIQNE FT PSTATINQELRDRLQVLHRFSATVTGGQYVSKEQAVIKRFWKLNHHVTYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRVYFYDSVQN" FT gene complement(1068..1472) FT /gene="AC3" FT CDS complement(1068..1472) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:C1KDZ1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C1KDZ1" FT /protein_id="ACO35601.1" FT /translation="MDSRTGDTITAAQARNGAYTWTVPNPLYFKITTHAQRPFNMDQDI FT ITLQIQFNHNLRNQLHIHKCFLSFKIWTRLHPQTLHFLRVFRTQVLKYLDNLGVISINN FT VIRAVDHVLYNVFEGTEYVQQITDIKFKLY" FT gene complement(1213..1620) FT /gene="AC2" FT CDS complement(1213..1620) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:C1KDZ2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C1KDZ2" FT /protein_id="ACO35602.1" FT /translation="MQPSSPSTAHSTQVPIKVRHRSEKRRAPRRRRIDLNCGCSIYVAL FT GCANHGFTHRGHHHCSSGKEWRVYLDSAQSPIFQNHDTRATAIQHGSGYNNFTDTIQPQ FT PQESTAHTQVLPLFQDLDSLTSSDFAFLEGI" FT gene complement(1520..2611) FT /gene="AC1" FT CDS complement(1520..2611) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:C1KDZ3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C1KDZ3" FT /protein_id="ACO35603.1" FT /translation="MPRAGRFSLKAKNYFLTYPQCSIDKEEALTQLQKLNTPTNIKFIR FT ICRELHQNGSPHLHVLIQFEGKYNCTNQRFFDLVSPNRSAHFHPNIQAAKSSSDVKTYM FT EKDGDIVDFGVFQVDGRSARGGCQSANDAYAEAINSGSKSSALCILREKAPKDFVLQFH FT NLNSNLDRIFAPPLEEFVSPFLSSSFDQVPEQLEEWAAENVRDSAARPWRPISIVIEGD FT SRTGKTMWARSLSPRHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRD FT WQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEYLDEDKNAALKAWAIKNATFVTLYGP FT LYSGTHQGATQVREEESTSPEED" FT gene complement(2161..2454) FT /gene="AC4" FT CDS complement(2161..2454) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C1KDZ4" FT /protein_id="ACO35604.1" FT /translation="MGALISTSSSSSRGNTTAQINDSSTSYPQTGQHISIQTFRRLKAR FT QMSRPIWRKTETSLILECSRSMEDQLEEVASLPTTRMPRQSTQDLSHRHSVY" XX SQ Sequence 2763 BP; 707 A; 561 C; 656 G; 839 T; 0 other; accggatggc cgcccgaaat ttcgtggtgg tccccccctt gtcggccaat gaataacgtg 60 ccttgaatgt tagataagtg gaaagtgacg tttgcttttg tctttatata cgtcagccct 120 aattttaacg gtgtaagatg tgggatcctt tagttaacga tttccctgaa accgttcacg 180 gttttaggtg tatgttagcg gttaagtacc tcctacttgt tgaatctacg tattcaccag 240 atactgttgg gtacgatctt gtacgcgatc ttattggagt tgttcgagct aagaactatg 300 tcgaagcgtc ctgcagatat aggaattttc acacccgtct ccagggtacg gcgccgtctg 360 aacttcgaca gcccgtatgt caaccgtgcg agtgccccca ttgccctcgt cacaaacaaa 420 aggagatcat gggctcagcg gcccatgtat cggaagccca ggatgtacag aatgtacaga 480 agtcctgatg ttcccaaggg gtgtgaaggt ccgtgtaagg tacagtcatt tgagacgaag 540 aatgctgttg ggcattctgg tactctgctc tgtgtttctg atatcacccg tggtaatgga 600 cttactcatc gtgttgggaa gagattttgt ataaaatctg tttatattat tggtaaaatc 660 tggatggatg agaatattaa gacgaagaat cacactaaca acatgttatt ctggttagtt 720 agggatagac gtcctggttc agctccttat ggattccacg aggcattcaa tatgattcaa 780 aatgaaccca gtacagccac tattaatcag gagttgagag atcgtttgca ggtgttacat 840 aggttcagtg cgactgttac aggtggacaa tatgtgtcca aggaacaagc tgtcatcaag 900 aggttctgga agttgaatca tcatgtcact tacaatcatc aggagcaagc taaatatgag 960 aaccatactg aaaatgcttt gttattgtat atggcgtgta ctcatgccag taatccagtg 1020 tatgccacat taaaaatcag agtgtatttc tacgattcag tacaaaatta ataaagctta 1080 aattttatat ctgtaatttg ttgtacatat tcagttcctt cgaatacatt atacaataca 1140 tgatctactg ctctaattac attgttaatt gatattacac ccaaattatc taagtacttc 1200 aacacttgtg tcctaaatac cctcaagaaa tgcaaagtct gaggatgtaa gcgagtccaa 1260 atcttgaaag agaggaagca cttgtgtatg tgcagttgat tcctgaggtt gtggttgaat 1320 tgtatctgta aagttattat atcctgatcc atgttgaatg gccgttgcgc gtgtgtcgtg 1380 attttgaaat ataggggatt gggcactgtc caggtatacg cgccattcct tgcctgagct 1440 gcagtgatgg tgtcccctgt gcgtgaatcc atgatttgca caccccaatg cgacgtaaat 1500 agaacacccg cagttcagat caatcctcct ccggcgaggt gctctcctct tctctgacct 1560 gtgtcgcacc ttgatgggta cctgagtaga gtgggccgta gagggtgacg aaggttgcat 1620 ttttaattgc ccaggctttt agggcagcat tcttgtcctc gtctaaatac tcggtgtatg 1680 atgacgttgg gcctggattg cagaggaaga ttgttgggat acctccttta atttgaattg 1740 gtttcccgta cttggtgttg ctttgccagt ccctttgggc ccccatgaac tctttaaagt 1800 gctttagata gtggggatcc acgtcatcaa tgacgttgta ccaggcctca ttgctgtaaa 1860 ccttggggct taagtcaaga tggccgcaaa ggtagttatg acgtggactc agagacctgg 1920 cccacatggt cttccctgtc ctgctatccc cttctatcac aatgctaatg ggcctccacg 1980 gccgcgcagc ggaatccctg acgttctcgg cagcccattc ctcaagttgc tctggaactt 2040 gatcaaatga agaagataaa aaaggagaaa caaattcctc cagcggagga gcaaaaatcc 2100 tatctaaatt gctatttaaa ttatgaaatt gtaaaacaaa atctttggga gctttctccc 2160 ttaatataca gagtgccgat gacttagatc ctgagttgat tgcctcggca tacgcgtcgt 2220 tggcagactg gcaacctcct ctagctgatc ttccatcgac ctggaacact ccaaaatcaa 2280 cgatgtctcc gtctttctcc atataggtct tgacatctga cgagctttta gccgcctgaa 2340 tgtttggatg gaaatgtgct gacctgtttg gggatacgag gtcgaagaat cgttgatttg 2400 tgcagttgta tttcccctcg aactggatga ggacgtggag atgagggctc ccattttgat 2460 gtagctctct gcagatcctt atgaatttaa tgttagttgg tgtgtttaat ttttgtaatt 2520 gggttagggc ttcttctttg tcgatggagc attgtgggta tgtgaggaaa taatttttgg 2580 cttttaaaga gaaacgccca gctctaggca tgttgacttg gtcaattggg gggcacttca 2640 aactcctgct gaatgggggg gcattggggg gcaatttata ttctgggggg catggcatta 2700 ttgtaattac tttaatttta aattcaaaat tcaaattggt aaagcggcca tccgtataat 2760 att 2763 //