ID   FJ816101; SV 1; linear; genomic RNA; STD; VRL; 1846 BP.
XX
AC   FJ816101;
XX
DT   05-APR-2009 (Rel. 100, Created)
DT   24-JUN-2010 (Rel. 105, Last updated, Version 2)
XX
DE   Panax notoginseng virus Y isolate Yunnan polyprotein gene, partial cds; and
DE   3' UTR.
XX
KW   .
XX
OS   Panax notoginseng virus Y
OC   Viruses; Riboviria; Potyviridae; Potyvirus; unclassified Potyvirus.
XX
RN   [1]
RP   1-1846
RX   DOI; 10.1016/j.jviromet.2010.03.010.
RX   PUBMED; 20304013.
RA   Zhang Y., Yin J., Li G., Li M., Huang X., Chen H., Zhao W., Zhu S.;
RT   "Oligonucleotide microarray with a minimal number of probes for the
RT   detection and identification of thirteen genera of plant viruses";
RL   J. Virol. Methods 167(1):53-60(2010).
XX
RN   [2]
RP   1-1846
RA   Yin J.;
RT   ;
RL   Submitted (10-MAR-2009) to the INSDC.
RL   Chinese Academy of Inspection and Quarantine, No. A3 Gaobeidian Beilu,
RL   Beijing, Chaoyang District 100123, China
XX
RN   [3]
RP   1-1846
RA   Zhang Y., Li M., Zhu S., Li G.;
RT   ;
RL   Submitted (10-MAR-2009) to the INSDC.
RL   School of Medicine and Medical Science, Conway Institute, University
RL   College Dublin, Belfield, Dublin 4, Ireland
XX
DR   MD5; bd59ee8a43f9a0784e2aea14feced53d.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1846
FT                   /organism="Panax notoginseng virus Y"
FT                   /host="Panax notoginseng"
FT                   /isolate="Yunnan"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /isolation_source="leaf"
FT                   /collection_date="11-Mar-2009"
FT                   /db_xref="taxon:380045"
FT   CDS             <1..1485
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:C1KDH5"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:C1KDH5"
FT                   /protein_id="ACO35046.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVIAMTYALLKMGFPAEQHDEVCQYFVNG
FT                   DDLLLAVNPAHESLLDSLSDIFQQLGLKYTFESRTRNKEELWFMSHKGVLKDDLYIPKL
FT                   EEERIVSILEWDRSIVPEHRLEAICAAMIESWGYEWLTNEIRHFYSWVLEQAPYNEIAK
FT                   MGKAPYISEMALRRLYTSEQVDEKEILECFNRFLDLELDDEEDLRVIHQGDKTTTMDAG
FT                   ESSGDSSKKNDKNKDKQQQLTPTNDQNKSISNPNKDKDVDAGSSGTYRVPKLKAITAKM
FT                   RVPRYNNKNSMNLEFLLNYSPEQIDITNTRSTQAQYQAWYEGVKNDYDVSDQDMEVLLS
FT                   GLMVWCLENGTSPNLNGMWTMMDGEEQREYPIKPLIDHAKPTFRQIMHHFSDVAVAYIE
FT                   MRNTKKPYMPGYGLKRNLRDRSLACYAFDFYEMTSSSPERAREAHLQMKAAALKNSRTR
FT                   LFGLDGSVSSKEEDTERHTVEDVNRNMHSLLGMQGM"
FT   mat_peptide     <1..636
FT                   /product="NIb"
FT   mat_peptide     637..1482
FT                   /product="CP"
FT   3'UTR           1486..1846
XX
SQ   Sequence 1846 BP; 607 A; 323 C; 426 G; 490 T; 0 other;
     ggcaacaata gtgggcagcc ttcaacagtt gttgataaca cactaatggt tgttattgct        60
     atgacatacg cactccttaa aatgggcttc ccagcggaac aacatgatga ggtgtgtcaa       120
     tactttgtca atggtgacga tctattactt gccgtgaacc ctgcacatga atcattgctt       180
     gatagcttat cagatatatt ccaacaattg ggattgaaat atacgtttga aagcaggact       240
     cgtaacaaag aagaattatg gttcatgtct cacaaaggag tcttaaagga tgatttgtat       300
     attccaaagt tggaagagga gagaatcgtc tctatattgg agtgggatag aagcatagtg       360
     cccgaacaca gactggaagc aatatgcgca gctatgatag agtcgtgggg ttacgaatgg       420
     cttacgaatg aaatacgtca tttctacagc tgggtgttgg aacaagcacc gtataacgag       480
     atagcaaaga tgggaaaagc tccttatatt tcagaaatgg cactgcgcag attgtacacc       540
     tcagaacagg tggatgagaa agagattttg gagtgcttca atcgctttct agacttagag       600
     ttggacgatg aggaggattt acgcgtaatc catcaagggg acaaaacaac aacaatggat       660
     gcaggggaat ccagtggcga tagctcaaag aaaaatgata aaaacaaaga taaacaacaa       720
     caattgaccc caacaaatga tcaaaacaaa tcaatatcaa atccaaacaa agataaagac       780
     gtggatgcag gttcatcagg gacatatcgt gtaccgaaac tgaaagcaat aacggcgaaa       840
     atgcgggtac ctagatataa caacaaaaac tcgatgaatt tggaattcct gctcaattac       900
     tctccagaac agattgacat taccaacacc aggtcaacac aagcacaata ccaggcatgg       960
     tatgaaggtg ttaagaatga ttatgatgtt agcgatcagg acatggaagt tttattgagt      1020
     ggtttaatgg tttggtgtct tgaaaacgga acatcaccaa acttaaatgg aatgtggacg      1080
     atgatggatg gcgaggagca acgggagtat ccgataaagc cattaattga tcacgccaaa      1140
     cccacattca ggcagataat gcaccatttc agtgacgtag ctgtcgcgta cattgaaatg      1200
     cgtaatacga agaaaccata tatgcccgga tatggtttga aacgtaactt aagggataga      1260
     agcttagctt gctacgcttt tgacttctac gaaatgacct caagctcacc tgaaagggct      1320
     agagaggctc atctgcaaat gaaagcagcg gctcttaaga attcaaggac caggttattt      1380
     ggccttgatg gcagcgttag tagcaaggaa gaggacacgg agaggcacac tgttgaagat      1440
     gttaatcgga acatgcattc tctgcttggc atgcagggta tgtaaggttg tctcggtagt      1500
     catattagga tatacatttg aataagcagt cttagtagag atttaaggaa aaggtgagca      1560
     ggtgaagatt cgtccactcc ctggtaagct gagtatctta ataccttcaa aagctgataa      1620
     aatcaagtgt attttccttt ccattacccg ttagtatcat ctcctacgtt ttacatatat      1680
     aatattacgt gttagtgtat aatcatttgt gtaattagtg agggagccct cgtttacact      1740
     gtgattattt catttcgtat tatatttgta ttatcgagct tatttctagt gtttatcatg      1800
     agtgatggaa gccatcgttg gtagatgcta ttcttaagta agagac                     1846
//