ID FJ815441; SV 1; linear; genomic RNA; STD; VRL; 7913 BP. XX AC FJ815441; XX DT 31-JUL-2009 (Rel. 101, Created) DT 21-AUG-2009 (Rel. 101, Last updated, Version 2) XX DE Tomato infectious chlorosis virus segment RNA2, complete sequence. XX KW . XX OS Tomato infectious chlorosis virus OC Viruses; Riboviria; Closteroviridae; Crinivirus. XX RN [1] RP 1-7913 RX DOI; 10.1007/s00705-009-0432-7. RX PUBMED; 19575276. RA Wintermantel W.M., Hladky L.L., Gulati-Sakhuja A., Li R., Liu H.Y., RA Tzanetakis I.E.; RT "The complete nucleotide sequence and genome organization of tomato RT infectious chlorosis virus: a distinct crinivirus most closely related to RT lettuce infectious yellows virus"; RL Arch. Virol. 154(8):1335-1341(2009). XX RN [2] RP 1-7913 RA Wintermantel W.M., Hladky L.L., Gulati-Sakhuja A., Li R., Liu H.Y., RA Tzanetakis I.E.; RT ; RL Submitted (10-MAR-2009) to the INSDC. RL Virology, USDA-ARS, 1636 E. Alisal Street, Salinas, CA 93905, USA XX DR MD5; d07c91995083aaa4b807ba492b494fa5. DR EuropePMC; PMC3889241; 24426308. XX CC INSD Accession Numbers FJ815440 and FJ815441 represent the complete CC genome of Tomato infectious chlorosis virus. XX FH Key Location/Qualifiers FH FT source 1..7913 FT /organism="Tomato infectious chlorosis virus" FT /segment="RNA2" FT /isolate="Orange County, CA" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:52135" FT 5'UTR 1..584 FT gene 585..686 FT /gene="ORF1" FT CDS 585..686 FT /codon_start=1 FT /gene="ORF1" FT /product="p4" FT /note="small hydrophobic protein" FT /db_xref="GOA:C0K277" FT /db_xref="UniProtKB/TrEMBL:C0K277" FT /protein_id="ACS73874.1" FT /translation="MAVVFYLLCLFIIIILFTCRISIKNIHSVQHRF" FT gene 711..2375 FT /gene="ORF2" FT CDS 711..2375 FT /codon_start=1 FT /gene="ORF2" FT /product="HSP70h" FT /note="similar to heat shock protein 70" FT /db_xref="GOA:C7B981" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR018181" FT /db_xref="InterPro:IPR029047" FT /db_xref="UniProtKB/TrEMBL:C7B981" FT /protein_id="ACS73875.1" FT /translation="MDCKIGLDFGTTFSTISAYVNGKMFELPLNNTTYISTCIAITSNS FT DAVIGGAAEILSSDVSPHCFFYDLKRWVGVDEKSFDVAKKKIKPKYSVELKGSEVYITG FT INKGYSTTLSVRQLIKAYIETIVKLFAKTFNLQIRDLNQSVPADYKCAQRLFARSVLNS FT LSFPCRRIINEPSAAAVYCVSRYPEYDYFLVYDFGGGTFDVSLIAKYKKYVTVVDTEGD FT SFLGGRDIDMSIDNYLKTKYKLSGNIPAVFLALIKEECNTLGKSSFTVILDNGSTAVIE FT FSPEELRACVVPFAEKSVEILNRVVSRNGLTTGVVFLVGGSSLLKPVQSVVKQYSTQIG FT LTVLIDENMRSAVSYGCSLLHSLEDSGNIIYIDCNSHPLSDLSFNCDPSVVVRKPMSIP FT YKQTMPRKHERQVHTEVNIYEGSDLFCLNNDWLISSKLTSTDYAKVGEPYSIIYEYTID FT GIIELSIKNEVTGVISKLKNSFEKSSTIEKLELNLTQLSNVDELCTVIALLSYRKKELN FT KLAKLFNIPNMLIQASKNYGDFKILYSMLSRDNSNFK" FT gene 2375..2536 FT /gene="ORF3" FT CDS 2375..2536 FT /codon_start=1 FT /gene="ORF3" FT /product="p6" FT /db_xref="UniProtKB/TrEMBL:B4YNS5" FT /protein_id="ACS73876.1" FT /translation="MLVILVLSDSGRYITHYFSDRSDFSGEELIIFSEDISIVIDLILK FT CPYHKQSW" FT gene 2530..4083 FT /gene="ORF4" FT CDS 2530..4083 FT /codon_start=1 FT /gene="ORF4" FT /product="p60" FT /note="putative movement protein" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:B4YNS6" FT /protein_id="ACS73877.1" FT /translation="MVIMTEDRKAILFFQTLLKKSNVFEEMTEVNNYIKGNLRLVNSNR FT YPSMSRGAPFYFDSEYYLSGGNVVVYPDSHNTYLKLLVVYLDKCYKNYTKKTGYPGKSL FT LTIRDYGSYISRWSDYHDKSITDYLTHNPGVGCVFTNEDISNAYPNQSEITKRILYRIS FT NSIGHMPSLNEFEKSELSSFAIETERDAPVVQNDSNTSQFFKECVNTLRTYLAYSGSSI FT GKAKLDSTKVSYDIFIESLSGDFDRESLKTNPLAISKFMQLYTKIGGNSETFKDKFNTL FT KLMSNPFREFCERAFKINVNSSKDVLYEKIPREKTSDILADVDMFSRILVRTSDYKIES FT NNNTLNSVIDTIVTEALKLFFPRMKGLYPLEIELAFLHYFALSTTNSKRRGDKRKNVIS FT INGEEVQISMNDICNRVDSILREAGAFQSGINYVRKWANKRGHIALNHFKNNRTKLYLF FT SDYPKLLPYMRFDYFKALDIELLTEEERLSLNTLRLITEDKSSHSNDTRADLLSWTLRY FT " FT gene 4065..4307 FT /gene="ORF5" FT CDS 4065..4307 FT /codon_start=1 FT /gene="ORF5" FT /product="p10" FT /db_xref="UniProtKB/TrEMBL:B4YNS7" FT /protein_id="ACS73878.1" FT /translation="MDFEILIKEKSPEIFSVYVNYIINSYYNGLGPTSDLLDLINKNFL FT TFSSRECEIDSCIEDFDIKYYFRCLEYCKNGKLIW" FT gene 4288..5079 FT /gene="ORF6" FT CDS 4288..5079 FT /codon_start=1 FT /gene="ORF6" FT /product="coat protein" FT /db_xref="GOA:C7B985" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:C7B985" FT /protein_id="ACS73879.1" FT /translation="MENLSGNANFDETNTSRVNSDGIGSHMEHDDDDRSVNGPPSDEIN FT NHTTRSVHGRDHTSGNIGDYSKADLSRIMVKVSRPDAMSESDSNLYKEVIVEYLKNNCT FT GGAEPDKVLVVAFFVALCQYALNSGTSVKAISDRTVDLSFGYDNQKYTVKAGHFLSYAQ FT SRTSGHPNALRRFMRSSLETVKQLQDVGLIYSNGVVAAKHGVVKEFRNSYADFDTGHLD FT RMSNDDLAALMLAKCHALKKSEGNSRTIYNTVQLADMKHPC" FT gene 5087..7048 FT /gene="ORF7" FT CDS 5087..7048 FT /codon_start=1 FT /gene="ORF7" FT /product="minor coat protein" FT /db_xref="GOA:C7B986" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:C7B986" FT /protein_id="ACS73880.1" FT /translation="MMEEEISLENRAVKDGLSFNVNIGDKFDREVNLSINLDRVKHFGY FT SYVFVCIGDSSNRYQLGWENITKSSLSFNHLKNGKYENDFSLMRSFTVDFDNNMVVNIR FT LVNNKLAVSQGGRMTNVLCDLPSSLKVELWISFSLDIGNKYVKGKSAIKSVDCSNLISK FT RLVDGVVPQLTSTHSFLKIGSDTSSIKPVKNDVLIEKIKTFEDILVADVEDHKDIEEDR FT SKYELPDVTSEFQQEDKIKQVRLYDVLDCGGKSFSTLTINAKFKPFKFVDMVNLLQLWY FT GDSKSNNLELLIRYDESQRDRLTLQLMYTKNGRWRMFEEKKVTLDEQQLNKDDGSISFG FT LRKTKNTYVVVHNGKTLYSFDHAIRNNSLKVGFEFQIPVIVFQKYSSETLKRPVGYGKI FT VEILIDGIPIKYNSNLMLEDNSNINIMNMKTLDTISSDNAKNVREMFSRKRDPDQENNN FT VEIVDIDKPNEKNRPSLICQNFIGEISDNYLRSLRNKCEKKLEGLGVPKNLTFQVLCQL FT SMTFSTSRECASKQDQFLKVITSDNKSSIVVNKKDVYQSIEKDIMTHRKYNLERMMLRE FT SSKEVLDLLREGKLTVNSRTALKLGFLSEKSYLCCDFLDYNRVLLTEVEKSAVSLSLNK FT LSNLNKSKRTLVNVSQIT" FT gene 7048..7734 FT /gene="ORF8" FT CDS 7048..7734 FT /codon_start=1 FT /gene="ORF8" FT /product="p27" FT /db_xref="UniProtKB/TrEMBL:C0K284" FT /protein_id="ACS73881.1" FT /translation="MDSPPRFVSVDKNEENDVILNFNSNFWRVYSALSNDAIMTWDELY FT MFKQLCLSLLTECESLPNNLILYHTNTMPHEILGSRRINDTDIDLHSSRYFQNVTKQVV FT RFLLEDYLIIINMKLHMKKGLLDVLDVDDILRMIKSTNLEVLKSIVLSYICSSFGECKL FT YCRHLSIIFEEDHRLKSLLKLFKKNKSLTSKEIGVIRATINNGIIGKFTIKRSFGFGIP FT FENINL" FT 3'UTR 7735..7913 XX SQ Sequence 7913 BP; 2700 A; 1207 C; 1622 G; 2384 T; 0 other; gtaataactt taccaaattt tcgtccaagg cgagacagcc gaaaacgtct ataaaatgaa 60 gttgttgcca agttcgcttc tatgacctta aatggagtgg gcattgtaaa tatgtaaata 120 ggtaaatatt gtatatagta tacgtttttc tttttctttt atagatagga caagtacccg 180 aaacagaacg gaacgaaact aaactaaacg aacctaaaaa gttcaagttt taggtatttt 240 tctctgttct gttaaccata tggctgccca gaggtgttgt atatagataa acgtctggtc 300 gtggcaattt tcagttgttt gtgagagtaa aaattttaag atctttatct caaatggtag 360 atagtaagtc gaaataaagt tagttaatat ttttagattc atattttagt gattaaattc 420 cacgagtttg aaatcgcgtt agagaaataa aaattaagaa acatttcttt gtacttatgt 480 tcattcaagt ttattaaata aaaataaaaa attttccatt tcaataaata aaccacgtca 540 ctggattggt gttgttacac ggagtgtctc aaactaacta gaatatggca gtggtgtttt 600 atttgctttg cttatttata ataataattt tgtttacgtg cagaataagc ataaaaaata 660 ttcattcagt acagcacagg ttctgacttt atagtgcgtt attagagatc atggattgta 720 aaatagggtt agattttggt actactttca gtactatcag tgcgtacgtt aatgggaaga 780 tgtttgagct tcctttaaat aacacaacat atatctccac ctgcatcgct attacgtcta 840 acagtgacgc tgtaattggg ggtgctgcag agattttgtc tagtgatgtt tccccacatt 900 gtttctttta tgatctaaaa aggtgggtcg gagtcgatga gaaatctttc gacgtagcaa 960 aaaagaaaat aaaaccgaaa tattcagtgg agttgaaagg ttccgaagtg tatattacgg 1020 gaattaataa agggtacagc accactctgt ccgtcaggca attgattaag gcttacatag 1080 agaccatagt taagttgttt gcaaagactt tcaatctgca aatcagggac ttaaatcaaa 1140 gtgtgcccgc tgactacaag tgtgcgcaaa ggttgtttgc aaggtctgta ctcaattctt 1200 tatcgtttcc atgcaggagg ataataaacg aaccatctgc cgctgctgta tactgtgtca 1260 gtcgttatcc agaatacgat tatttccttg tatacgactt tggaggaggt actttcgacg 1320 tatcattaat cgctaaatac aagaaatacg tgactgtggt agacactgag ggagattctt 1380 tcttaggagg tcgtgatatc gacatgagta tagataatta cctaaaaact aagtacaaat 1440 tgagtggcaa tatacccgct gtgtttttag ctttaataaa agaagaatgt aacactctgg 1500 ggaaatctag ttttactgta atattagata atggtagtac tgcagttatt gaattctctc 1560 ccgaagagtt gagggcttgc gtggttccgt ttgcagaaaa atcagtggaa attttaaata 1620 gagttgtgtc tagaaatggc ctcaccactg gagtggtatt cctagtagga ggttcttcct 1680 tgcttaaacc tgttcaatcg gtagtcaagc aatattccac tcagataggt ctaaccgttt 1740 tgatcgacga aaatatgaga agtgctgtgt cgtacggttg ttctctgttg cattcgttgg 1800 aagacagtgg taatattatt tacatagatt gcaactctca tccgttgtca gatctatcat 1860 tcaattgcga tcctagcgtc gtagttcgaa aacctatgag tataccatat aaacaaacca 1920 tgccaagaaa acatgagaga caagttcaca cagaagttaa catatacgaa ggatcagatt 1980 tgttttgtct aaacaatgat tggttgatca gcagtaaact gacgtctaca gactatgcta 2040 aggttggaga accttacagc atcatatatg agtatactat cgatggaatt atagaattga 2100 gcataaagaa tgaagtgacc ggggtgataa gtaagttgaa aaacagtttc gaaaaatcca 2160 gtacaataga aaaattagaa ctgaacttaa ctcaattgtc taatgtggat gaattgtgca 2220 ctgtaatagc tttgttgtct taccgtaaga aagaacttaa caagttagcg aaattgttta 2280 acattccaaa catgctgata caggcaagta aaaattatgg tgatttcaag attctctatt 2340 ctatgttgtc aagggacaat agtaatttca agtgatgtta gtgattttag tacttagtga 2400 ttcaggaaga tatataactc attacttttc ggacaggagc gatttcagtg gggaagagtt 2460 gatcattttt agtgaggaca tcagtatcgt gatagatcta attctgaagt gcccgtacca 2520 caagcaatca tggtgataat gacagaagac agaaaggcca ttctattttt tcaaacgtta 2580 ctgaaaaagt caaacgtgtt tgaagagatg acagaagtta ataactacat aaaaggtaat 2640 ttgagattgg ttaacagtaa tagatatccg tctatgtcta ggggagcacc tttttatttt 2700 gattcggaat attacttgag tggtggtaac gtagtagtat atccagattc acacaacact 2760 tatctcaagt tgttggtagt gtacttagat aaatgttata aaaactacac caagaaaact 2820 gggtacccgg gtaagagtct tttgacgatt agagactatg gttcttacat ctctcgatgg 2880 agtgactatc atgacaagtc tatcactgat tatctgactc acaaccctgg tgtcgggtgt 2940 gtgtttacca atgaggacat atcaaacgct tatcccaatc agagtgagat aacaaagaga 3000 atcctgtaca ggatcagcaa ttccataggt catatgccta gtttaaatga attcgagaaa 3060 tccgaattga gttcttttgc cattgaaacg gagagagatg cccctgttgt tcaaaatgac 3120 tcgaacacat ctcaattctt caaggaatgt gtgaacactt tgcgtactta tctagcgtat 3180 tctgggagta gtatagggaa agcaaaattg gattcgacta aggtgagtta tgatatattc 3240 atagagtctt tatctggcga tttcgataga gaatcattga aaaccaatcc actcgccata 3300 tccaaattca tgcagttgta cacaaaaatt ggtggtaata gtgaaacttt taaagacaaa 3360 ttcaacactc tcaaactgat gagtaatcca tttagagaat tttgcgagag ggcgttcaaa 3420 ataaacgtca atagtagtaa ggacgtgttg tatgaaaaga tacctagaga gaaaacttca 3480 gatatcttgg cagatgtgga tatgttttct agaatattgg ttagaacttc agactataag 3540 atagaatcga ataacaacac attaaattcg gtcatagata caatcgtcac agaagcattg 3600 aaattgttct tcccgagaat gaaaggatta tatcccctag agatagaatt ggcgttttta 3660 cactattttg ctttaagtac tactaactca aaaagaagag gtgataagag aaagaacgtt 3720 atttctataa acggtgaaga agttcagata tctatgaatg atatttgtaa tcgagttgat 3780 tctattttaa gggaagctgg tgcatttcag agtggtatca attacgtgag gaagtgggct 3840 aataagagag gacatattgc tttgaatcat tttaaaaaca atcgcacaaa gttatatctg 3900 ttttctgact accctaagtt gttgccttac atgcgattcg attatttcaa ggcgttggat 3960 atcgaattac ttacagaaga agagaggctt tctttaaaca ctttgaggtt gattaccgaa 4020 gataaaagct cgcattcgaa cgacactaga gcggatttgt tgtcatggac tttgagatat 4080 tgatcaaaga aaaatctcct gaaatttttt cggtttacgt caattacata attaatagtt 4140 attataacgg gttaggtcct acgtccgatc tgttagattt gattaataag aattttttga 4200 cgttttcatc gagagagtgt gagattgatt cgtgtattga agatttcgat ataaagtact 4260 actttcgttg tttagaatat tgtaaaaatg gaaaacttat ctggtaatgc aaactttgat 4320 gaaactaaca ccagtcgtgt aaactctgat ggaattggaa gtcacatgga gcatgatgat 4380 gatgacaggt cagtcaacgg acctccaagt gatgagataa acaatcatac tacgagatct 4440 gttcatggta gagatcacac gtcaggtaat ataggagatt actcaaaagc tgacttgagt 4500 agaattatgg tcaaggtcag tagaccggat gctatgagtg aatccgatag taacttgtat 4560 aaagaggtga ttgttgaata tctgaaaaac aattgtactg gaggtgcgga accggataaa 4620 gttttagtgg ttgcattttt tgttgcacta tgtcagtatg ctctcaactc tggcacttcg 4680 gttaaagcaa taagtgacag gactgtggat ttgagttttg ggtatgacaa tcaaaaatat 4740 acagttaaag cgggacattt tttatcatat gctcaatcta gaacgtcagg tcacccaaac 4800 gctctaagga ggttcatgcg atctagtctg gaaacagtta aacaactaca agatgttggg 4860 ctgatatatt ctaatggagt cgtggccgcg aaacatgggg ttgtgaaaga attcagaaac 4920 agctatgcag actttgacac tggtcatcta gacagaatgt ctaacgacga tctggctgcg 4980 ttgatgttag ctaaatgtca tgcattgaag aaatccgaag gtaatagtag aactatatac 5040 aatacggtgc aattggctga tatgaaacac ccatgctaaa cgcaatatga tggaagaaga 5100 aatatcctta gagaataggg cagttaagga cggactcagt ttcaacgtca atattggtga 5160 taagttcgac agagaagtca acttgtctat caatttggac cgtgtgaaac atttcggtta 5220 ttcctatgta ttcgtatgta taggcgacag ttctaataga tatcaattgg gatgggaaaa 5280 catcacgaaa tccagtttgt catttaacca tctaaaaaat ggtaaatatg agaacgactt 5340 cagtttaatg aggtctttca cagtggattt tgacaacaat atggtagtca acattagact 5400 cgtcaacaac aaattggctg tgagtcaagg aggtagaatg actaatgtgt tgtgcgattt 5460 acccagttca ctgaaagtag aactttggat atccttctcg ttagacatag gtaataagta 5520 tgtcaaaggg aaatcggcta tcaaatcagt ggattgctca aacttgatat cgaagagatt 5580 ggttgatgga gtggtacctc aactgacttc tacacattcg tttttaaaaa tcggtagtga 5640 cacgagtagc atcaaacctg taaaaaatga tgtgttaata gaaaaaataa aaacctttga 5700 agatatcctg gtcgcagatg ttgaagatca taaagacata gaggaagata gatcaaaata 5760 tgaactacct gacgtaacgt ctgaatttca acaggaagat aagataaaac aagtgaggtt 5820 gtatgacgtg ttggattgtg gtggcaaatc tttctccact ttaaccatta acgcaaaatt 5880 taagcctttc aaatttgtag atatggttaa cttattgcag ttgtggtatg gagactcaaa 5940 atctaacaat ttagagctgt tgatacgtta tgatgaatca caacgagata gattgacact 6000 tcaactcatg tatactaaaa acggcagatg gaggatgttt gaagaaaaga aggtgacact 6060 ggatgaacag cagcttaaca aagacgatgg ttcaatcagt ttcggactga ggaaaactaa 6120 aaacacctat gtcgtagtac acaacggaaa aactttatac agtttcgatc atgcaattag 6180 gaataattca ctaaaagtag gatttgaatt tcagataccc gtgattgtat ttcaaaaata 6240 cagttcggaa actttaaaaa gaccggtggg atacgggaaa attgttgaaa tacttataga 6300 tgggattcct atcaagtaca acagcaattt gatgttagaa gacaactcca acataaatat 6360 aatgaatatg aaaacattag acacaataag ttcggacaat gcaaaaaatg tgcgagagat 6420 gttctccaga aaaagagatc ccgatcaaga aaacaataat gttgaaattg tagacatcga 6480 taagccaaat gaaaagaacc gtccgagttt gatatgtcaa aattttatag gagaaatctc 6540 agacaactac ttaaggtctc taagaaacaa atgtgaaaag aaacttgaag gtctcggtgt 6600 acctaagaac ttaactttcc aagtactttg tcaactatcc atgacattct caacatctcg 6660 agaatgcgcg tcaaagcaag atcaattctt aaaagtgatt accagtgaca ataaatcctc 6720 tatcgtcgtg aacaaaaaag atgtttacca atcaatagaa aaagatataa tgactcaccg 6780 gaagtacaat cttgagagaa tgatgttgag agagagttcc aaggaagtgc ttgatttact 6840 aagagaaggt aagttgacag tgaacagtag aacagctttg aagttaggat ttttatctga 6900 gaaatcttac ctatgttgtg atttcctgga ttacaataga gttcttttga cagaagtaga 6960 aaagtctgct gtgtccctca gcttaaataa actgtccaat ttaaataaga gtaaaaggac 7020 attggttaat gtttcacaaa taacataatg gatagcccgc ccagattcgt aagtgtggat 7080 aagaacgaag aaaatgatgt aatactgaat ttcaattcca atttttggag agtatactct 7140 gctctaagta atgatgccat aatgacatgg gacgaattgt atatgttcaa acaattatgt 7200 ctatctttat taactgaatg tgaaagctta ccaaacaatt tgattttata tcacaccaat 7260 acaatgcctc acgaaatatt aggttctcgt aggattaacg ataccgatat agatttacac 7320 tctagtaggt atttccagaa cgtaaccaaa caagtcgttc ggtttctact agaagactac 7380 ttgatcataa tcaacatgaa attgcatatg aagaaagggt tgctggatgt gttagacgta 7440 gacgacatac tcagaatgat aaaatctaca aatttggagg tcttgaagtc tatagtgttg 7500 agttacatct gcagcagttt cggtgaatgc aaactgtatt gcagacatct gtcgataatc 7560 tttgaagaag atcacagatt aaagtctttg ttgaaactat tcaagaagaa caagagttta 7620 acttcaaagg aaattggagt tataagggca acaattaata atggtataat aggaaaattt 7680 accataaaaa gatcatttgg atttggaatt cctttcgaaa atattaattt ataatagggg 7740 ttgtttgcaa aactatatcc ctagagtcaa ccagcggctt aagctgagtc tggttttaaa 7800 tctcaaaaat agtatatata agaaatacag cacaagtatg tgtatttctt agtgtctcct 7860 aaaacagttg tttaactgtg cctaaaggag atatactatt aattagtata ggc 7913 //