ID FJ809772; SV 1; linear; viral cRNA; STD; VRL; 6563 BP. XX AC FJ809772; XX DT 22-SEP-2010 (Rel. 106, Created) DT 22-SEP-2010 (Rel. 106, Last updated, Version 1) XX DE Rio Mamore virus isolate HTN-007 segment L, complete sequence. XX KW . XX OS Rio Mamore hantavirus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Hantaviridae; Mammantavirinae; Orthohantavirus; OC unclassified Orthohantavirus. XX RN [1] RP 1-6563 RX DOI; 10.1089/vbz.2009.0115. RX PUBMED; 20687859. RA Richter M.H., Hanson J.D., Cajimat M.N., Milazzo M.L., Fulhorst C.F.; RT "Geographical range of Rio Mamore virus (family Bunyaviridae, genus RT Hantavirus) in association with the small-eared pygmy rice rat RT (Oligoryzomys microtis)"; RL Vector Borne Zoonotic Dis. 10(6):613-620(2010). XX RN [2] RP 1-6563 RA Richter M.H., Fulhorst C.F.; RT ; RL Submitted (05-MAR-2009) to the INSDC. RL Pathology, University of Texas Medical Branch, 301 University Blvd., RL Galveston, TX 77555-0609, USA XX DR MD5; 8255b8cb000342920184f5ab5acde365. DR EuropePMC; PMC2979329; 20687859. DR EuropePMC; PMC3557881; 23171649. XX FH Key Location/Qualifiers FH FT source 1..6563 FT /organism="Rio Mamore hantavirus" FT /segment="L" FT /host="Oligoryzomys microtis (small-eared pygmy rice rat)" FT /isolate="HTN-007" FT /mol_type="viral cRNA" FT /country="Peru" FT /isolation_source="lung cell lysate" FT /collection_date="Apr-1996" FT /note="PCR_primers=fwd_name: HTL-59, rev_name: HTL-60" FT /db_xref="taxon:46920" FT primer_bind 1..39 FT misc_feature 1..35 FT /note="5' noncoding region" FT CDS 36..6497 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:E1U7Q1" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR016268" FT /db_xref="InterPro:IPR024378" FT /db_xref="UniProtKB/TrEMBL:E1U7Q1" FT /protein_id="ACX83615.1" FT /translation="MEKYREIHQRVKDQAPGTVSALECIDLLDRLYAVRHDLVDQMIKH FT DWSDNKDVERPIGEVLLMAGISNDIIHGMEKKIIPNSPSGQILKSFFKMTPDNFKITGN FT LIEFVEVTVTADVARGIREKCLKYEDGLKFIEALLEIETKRGNLPQIYKITFSVVAVKT FT DGSNISTQWPSRRNDGVVQHMRLVQADINYVREHLIKHDERASLEAMFNLKFHVSGPKL FT RFFNIPDYRPQPLCEPDIANLLQYCKNWLTEEHEFVFKEVTGTSVSQVFEQHEREHMSR FT YSESRKPRNFLLMQLTVQGVYLPSTISSDQCDTRIGCLEISKNLPETPVQALALDVAHR FT YLSLNEDELINYYSPKVHFSASQNVKEPGTLKIGLSQLNPTSKAVLENVGKHKSEKGIF FT GEMIESINIGSQIQLNECSKTIEKILSNLEINIGETNTSIPVPNKTTGVDELLNKFYDN FT EIGKYLISILRKTAAWHLGHLVRDITESLIAHSGLRRSKYWSVHAYDHGNVVLFILPSK FT SLEVVGSYIRYFTVFKDGIGLLDHDNLDSKVEIDGVVWCYSKVMSIDLNRLLALNIAFE FT KSLLATATWFQYYTEDQGHFPLQHALRSVFSFHFLLCISQKMKLCAIFDNLRYLIPSVT FT SLYSGYELLIEKFFERPFKSSLDVYLYSVIKSLLISLAQNNKVRFYSKVRLLGLTVDHS FT TVGASGVYPSLMSRVVYKHYRSLISEATTCFFLFEKGLHGNLPEEAKIHLETVEWARKF FT NEKESKYGDILMKEGYNIDSLIKGDVKVEQQLFCQEVVELSAQELNKYLQAKSQVLCAN FT IMNKHWDRPYFSQTRNISLKGMSGALQEDGHLAASVTLIEAIRFLNRSQTNPNVIDMYE FT QTKQLKAQARIVRKYQRTEADRGFFITTLPTRVRLEIIEDYYDAIAKVVPEEYISYGGD FT KKILNIQHALEKALRWASGSSEITTSTGKIIRFKRKLMYVSADATKWSPGDNSAKFRRF FT TQAIYDGLSDQKLKCCVVDALRNIYETEFFMSRKLHRYIDEMNDCSEAVRDFLSFFSGG FT VSANVKGNWLQGNLNKCSSLFGSAISLLFREVWNCLFPELECFFEFAHHSDDALFIYGY FT LEPEDDGTDWFLYVSHQIQAGNYHWHAVNQEMWKSMFNLHEHLLLMGSIKVSPKKTTVS FT PTNAEFLSTFFEGCAVSIPFVKILLGSLSDLPGLGFFDDLAAAQSRCVKALDLGACPQL FT AQLAIVLCTSKVERLYGTADGMVNSPTAFLKAKKSYVPIPLGGDGSMSIMELATAGIGM FT ADKNILKNAYISFKHTRRDGDRYVLGLFKFLMSLSEDVFQHDRLGEFSFVGKVQWKVFT FT PKSEFEFHDQFSQTYLAAWTKQHPVYDYIIPRGRDNLLVYLVRKLNDPSIVTAMTMQSP FT LQLRFRMQAKQHMKVCRFDGEWVTFREVLAAADSFATTYQPSEKDLDLFNTLVSCTFSK FT EYAWKDFLNEVRCEVVTARHVHRPKIARTFTVREKDQAIQNPITSIIGYKYAATVDEVS FT DVLDSSFFPESLSADLQVMKEGVYRELGLDIGSPEVLKRIAPLLYKAGKSRVVIVEGNV FT EGTAESICSYWLKSMSLIKTIKVRPKKEVLKAVSLYNQKENVGLQDDLAATRLCIEVWR FT WCKANDQDVREWLNALYFEKQTLMDWIERFRRKGVVPTDPEIQCMGLLLFDVLGYKSVL FT QMQANRRAYSGKQYDAYCVQTYNEETKLYEGDLRVTFNFGLDCARLEVFWSKKEYILET FT SITQRHVLRLLMEEVSKELIRCGMRFKTEQVNQTRSLVLFKTESGFEWGKPNIPCIVYK FT HCVLRTGLRTRQPINKEFMINIQADGFRAIAQMDIESPRFLLAHAYHTLRDVRYQAVQA FT VGNVWFKTEQHKLFINPIVSSGLLENFMKGLPAAIPPAAYSLIMNKAKISVDLFMFNEL FT LALINRHNILNLDGIEETSEGYSTVTSMSSRQWSEEMSLMSDDDVDDMDDFTIALDDID FT FEQINLDEDIQHFLQDESAYVGDLLIQTEDVEVRKIRGVTKVLEPVRLIKSWVSKGLAI FT DKVYNPIGIILMTRYMSKTYNFGTVPLALLNPYDLTELESVVKGWGETVNDRFIELDRE FT AQLLVREKGIQPEDILPDSLFSFRHVDVLLRRLFPRDPTSIFY" FT misc_feature 6498..6563 FT /note="3' noncoding region" FT primer_bind 6537..6563 XX SQ Sequence 6563 BP; 2128 A; 1018 C; 1428 G; 1988 T; 1 other; tagtagtaga ctccgggata gaaaagatca gaataatgga aaagtataga gaaattcatc 60 agagggtaaa ggaccaagct cctggcacgg tctcagcatt agaatgtatt gatctcctgg 120 atcgtctcta cgctgttcgg catgatctcg tcgatcagat gattaaacat gattggtctg 180 acaataaaga tgttgaaagg ccaattggag aagtcctact catggcaggg atatcaaatg 240 atataatcca cgggatggaa aaaaagatca tccccaatag tccctcagga cagatattga 300 agagtttttt taaaatgaca cctgataatt ttaaaattac cgggaatttg attgagtttg 360 ttgaagtcac agtgactgcc gatgtggccc gaggcatcag agaaaaatgt ttaaaatacg 420 aagatggtct aaagttcatt gaagcattac tagagattga gacaaaaaga ggaaacttgc 480 cacaaattta taagataaca ttttcagttg ttgctgtgaa aactgatggg tcaaatatat 540 ccactcaatg gcctagccga aggaatgatg gagttgttca acacatgagg cttgttcagg 600 cagacattaa ttatgtaagg gaacacctta taaaacatga tgagcgtgct tcattagaag 660 caatgttcaa cttaaagttt catgtgtctg ggcctaaact ccgttttttt aacattccgg 720 attatcgccc tcagcctctt tgtgaacctg atattgcaaa cttgttacag tattgtaaga 780 attggctaac agaagaacat gaatttgtat ttaaggaggt cactggtaca agtgtttcac 840 aggtttttga gcagcatgaa cgagagcata tgtcaagata ttcagaatct cgaaagccta 900 gaaatttttt gttgatgcag ttaactgttc aaggtgttta tctgccctct actattagtt 960 cagaccagtg tgatacaagg atcggctgtt tagaaatatc aaaaaatcta cctgagacac 1020 cagtgcaagc actggcatta gatgttgcac ataggtactt aagtttgaat gaagatgagc 1080 tgatcaatta ctacagccca aaggttcatt tttcagcaag ccagaatgtt aaagagccag 1140 ggacactcaa aataggactt tcacaattga acccgacttc taaagcagtt ctagagaatg 1200 ttggtaaaca taagtccgaa aaaggaatat ttggtgagat gattgaaagt atcaacattg 1260 gtagtcaaat acaattaaat gaatgctcta agactataga aaagattttg tcaaatttgg 1320 aaataaatat aggggagaca aacacatcta tccctgtgcc taataagact acaggtgttg 1380 atgaattatt gaacaagttt tatgataatg aaattggaaa atatttgatc tctatattgc 1440 gaaagactgc tgcctggcat ttgggacatc ttgttcgtga cattactgaa agcttaatag 1500 cccattctgg attgaggagg tcaaagtact ggtcagtcca tgcttatgat catggaaatg 1560 ttgttctctt tatattgcct tccaaatcgc ttgaggtggt aggctcctac ataagatact 1620 tcacagtatt caaagatggt attggcttat tagatcatga taacctggat tctaaagtcg 1680 aaattgatgg tgtagtatgg tgctattcaa aagtcatgag tatcgatctg aaccggttgc 1740 tggctttaaa tattgcattt gaaaaatctc tcttagcaac tgctacatgg tttcagtact 1800 atacagaaga tcaaggccat tttcctcttc aacatgcatt gaggtctgtc ttttcatttc 1860 atttcttgtt atgtatctca caaaagatga aattgtgtgc catattcgat aatctcagat 1920 acctaatacc atctgtaaca tcattatatt ctggttatga gttgctcatt gaaaaattct 1980 ttgaacggcc tttcaaaagc tctctagatg tatatcttta ttctgttatt aagtctttac 2040 ttatcagtct tgcacagaat aataaggtta ggttttattc aaaggttaga ttactaggtc 2100 tcacagtaga tcattcaacg gtaggagcta gtggggtcta tccttcactt atgtctagag 2160 tagtgtataa gcattaccgg agtcttatct ctgaagcaac cacatgtttc tttttatttg 2220 agaaaggttt gcatgggaat ttgccagaag aagcaaagat acatttagag acagtagagt 2280 gggccagaaa gtttaatgaa aaagaaagta aatatggtga tatcttgatg aaggaaggkt 2340 ataacattga ttctctcatt aaaggtgatg ttaaggttga acagcagtta ttctgtcaag 2400 aggtagttga actaagtgca caagaattga ataagtactt gcaggcaaaa tcccaagttt 2460 tatgtgcaaa cattatgaat aaacattggg atagaccata ttttagccag acacgaaata 2520 taagcttaaa aggtatgtca ggtgcattac aggaagatgg gcatttagca gcaagtgtga 2580 cattaattga agccattcgt tttctcaata gatcacagac aaatccaaac gtaatagata 2640 tgtatgagca gacaaaacaa ttgaaagcac aagccaggat tgtgagaaaa taccaaagga 2700 cagaggctga tagaggcttt tttataacaa ctttgccaac aagagttagg ttagaaatca 2760 ttgaagatta ttatgatgca atagcaaagg tcgtccctga agaatatatt tcatatgggg 2820 gtgacaagaa aattttgaat attcagcatg ctttagagaa agctttaaga tgggcatcag 2880 ggtcatctga aataacaact agtacaggga agattatacg attcaaaagg aagcttatgt 2940 atgtgagtgc tgatgcaact aaatggtcac caggagacaa ttcagcaaaa ttcagaaggt 3000 ttactcaggc aatctatgat ggattatctg atcaaaagtt aaaatgctgt gtagtggatg 3060 cacttcggaa tatatatgaa acagagtttt tcatgtcccg taaattacat aggtatatag 3120 atgagatgaa cgattgttca gaagctgtac gtgatttttt atcttttttt tctggtggcg 3180 tgtcagcaaa tgtaaaaggt aattggctgc aagggaattt aaataaatgt tcatcattat 3240 tcggctcagc tatttccctc ctattccgag aagtgtggaa ttgcttgttt ccagagttag 3300 agtgtttttt tgaatttgca caccactcag atgatgcttt atttatttat ggttatttag 3360 aaccagaaga tgatggtact gattggtttc tgtatgtatc ccatcaaata caagcgggaa 3420 actatcactg gcatgcagta aatcaagaga tgtggaaaag catgtttaac cttcatgagc 3480 atctgctctt aatgggttca attaaggttt cacccaagaa aacaactgtt tcaccaacta 3540 atgcagaatt cctttcaaca ttctttgaag gttgtgcagt atctattcct ttcgtgaaaa 3600 ttttactggg ttctttatca gatcttcctg gacttggttt ctttgatgat ttggctgcag 3660 cacaaagtag atgtgttaaa gcattggatt taggcgcgtg tcctcagctt gcacagcttg 3720 ctatagtctt gtgtaccagt aaagtagaac gactttatgg tactgctgat ggtatggtaa 3780 attcaccaac tgcattcttg aaggcaaaga aatcatatgt cccaattcca cttggcggtg 3840 atggttctat gtcaataatg gagttagcaa ctgcagggat tgggatggct gacaaaaata 3900 tattaaaaaa tgcttatata tcatttaagc atacacgtag agatggtgat aggtatgtac 3960 tgggtttatt taagtttttg atgtcattga gcgaagatgt ttttcaacat gaccgacttg 4020 gggaatttag ttttgtgggc aaagttcaat ggaaagtatt tacaccaaag tcagaatttg 4080 agttccatga ccagttctct cagacatatt tagctgcatg gacaaagcag catccagtgt 4140 atgattatat aatcccgcgt gggagagaca atttacttgt ttatctagta agaaaactga 4200 atgatcctag tattgtcact gcaatgacta tgcagtcacc gttacaatta cgatttagga 4260 tgcaggcaaa acaacatatg aaagtttgta ggtttgatgg tgaatgggta acatttagag 4320 aggtattggc tgcagcagat agttttgcaa ctacatacca acctagtgag aaagatttgg 4380 atctgttcaa tacacttgta agttgtacat tctcaaagga atatgcttgg aaagatttct 4440 tgaatgaggt tagatgtgaa gttgtgactg caaggcatgt tcataggccc aaaattgcaa 4500 ggacattcac agttagggaa aaggatcagg caattcaaaa tccaatcaca tccattatag 4560 gctataaata tgcagcaact gtggatgagg taagtgatgt attggatagt tcattttttc 4620 ctgaatcctt gtctgctgat ctccaagtaa tgaaagaagg tgtctatcga gaattgggat 4680 tagacattgg atctcctgaa gttttaaaga gaatagcacc attgctctat aaagctggga 4740 aatcacgggt ggtcattgta gaaggtaatg tagaaggcac agctgagtct atctgtagtt 4800 attggttaaa gagtatgtct ttgataaaga caatcaaagt gaggccaaaa aaagaagtgc 4860 ttaaagcagt atccctatac aaccagaaag aaaacgtagg tttgcaagat gatctcgcag 4920 ctacaagact gtgtattgaa gtatggaggt ggtgcaaagc aaatgatcag gatgtaagag 4980 agtggctcaa tgcgttatat tttgagaagc agacattaat ggattggatt gaaagattta 5040 gaaggaaggg agttgtacca actgatcctg aaatacaatg tatgggtctg cttctgtttg 5100 atgtactagg ttataaaagt gtgcttcaga tgcaagcaaa ccgtagggcc tattcaggta 5160 agcaatatga cgcttattgt gttcaaacat acaatgaaga gactaagctg tatgagggtg 5220 atctgagggt gacatttaat tttggtcttg attgtgcacg ccttgaagta ttctggtcta 5280 agaaagaata tatactggaa acatcaataa cacagaggca cgttctcagg ttgttgatgg 5340 aggaagtttc aaaagaatta ataagatgtg gtatgaggtt caaaactgaa caggtgaacc 5400 aaacacggag tcttgtatta tttaagacag aatctgggtt cgaatggggg aagccaaaca 5460 taccatgcat cgtatataag cattgtgttt tacgaactgg gctaagaacc agacaaccca 5520 tcaataaaga gttcatgatc aatatacaag cagatgggtt tagagcaata gctcagatgg 5580 atatagaaag tcctcgattc ttgctagctc atgcatatca tacactgagg gatgtaagat 5640 atcaggcagt acaggctgta ggcaatgttt ggtttaaaac tgaacagcat aagttattca 5700 taaaccctat tgtgtcatca ggactccttg aaaattttat gaaaggcttg ccagctgcaa 5760 tacccccagc tgcctactca ttaattatga ataaggcaaa gatttctgtt gacttgttta 5820 tgttcaatga gctattagcc ttgatcaatc gccataatat attaaatctt gatgggatag 5880 aagagacatc agaaggttat agtacagtaa cttcaatgtc aagcagacaa tggtcagagg 5940 aaatgagttt aatgtcagat gatgatgtgg atgatatgga tgattttaca atagcattag 6000 atgacatcga ttttgaacaa atcaatcttg atgaagatat ccagcacttc cttcaggatg 6060 agtctgcata tgttggtgac ttgttaatac aaactgagga cgttgaggtc agaaagataa 6120 gaggtgttac aaaagtatta gagccagttc gcctaataaa gagttgggtg tcaaagggtt 6180 tagcaataga taaagtgtat aacccaatcg ggattatttt gatgactaga tatatgtcga 6240 agacatacaa ttttgggact gtgccattag ctctgttaaa tccttatgac cttacagaat 6300 tagaaagtgt tgtcaaaggt tggggtgaaa cagttaatga taggtttatt gagttggaca 6360 gagaagcaca gttacttgtt agagagaaag gtattcaacc agaagatatc ctgccagact 6420 ctttattctc attcaggcat gtagatgtac tccttagaag gttgtttcct agagacccta 6480 cttctatctt ttattaattg attgatcatc tttatttatt ctatgtgcat aatatagtgt 6540 tcttttcccg gagcatacta cta 6563 //