ID FJ807785; SV 1; linear; genomic RNA; STD; VRL; 8108 BP. XX AC FJ807785; XX DT 02-JAN-2011 (Rel. 107, Created) DT 04-APR-2012 (Rel. 112, Last updated, Version 2) XX DE Sweet potato chlorotic stunt virus strain West African segment RNA2, DE complete sequence. XX KW . XX OS Sweet potato chlorotic stunt virus OC Viruses; Riboviria; Closteroviridae; Crinivirus. XX RN [1] RP 1-8108 RA Trenado H.P., Franco A.O., Navas-Castillo J.; RT ; RL Submitted (06-MAR-2009) to the INSDC. RL Estacion Experimental la Mayora, Algarrobo-Costa, Malaga 29760, Spain XX DR MD5; a12602ecb47327de99144a85cec7dfc1. DR EuropePMC; PMC3650446; 23661487. DR EuropePMC; PMC4149548; 25170926. XX FH Key Location/Qualifiers FH FT source 1..8108 FT /organism="Sweet potato chlorotic stunt virus" FT /segment="RNA2" FT /host="sweet potato" FT /strain="West African" FT /isolate="Can181-9" FT /mol_type="genomic RNA" FT /country="Spain" FT /db_xref="taxon:81931" FT CDS 192..329 FT /codon_start=1 FT /product="p5.2" FT /note="ORF4" FT /db_xref="UniProtKB/TrEMBL:I6LK05" FT /protein_id="ADA61208.1" FT /translation="MRYKNQKHKNITSSPREVSTNISSSAHQTEQNFLSNNRITPLGRE FT " FT CDS 333..467 FT /codon_start=1 FT /product="p5" FT /note="ORF5" FT /db_xref="UniProtKB/TrEMBL:I6LK06" FT /protein_id="ADA61209.1" FT /translation="MFSVVSFKTTSPYKESYDPPVPPTHEFDSFCPSVVCMSLSYIYI" FT CDS 406..534 FT /codon_start=1 FT /product="p5.1" FT /note="ORF6" FT /db_xref="UniProtKB/TrEMBL:I6LK07" FT /protein_id="ADA61210.1" FT /translation="MNLIVFAQVWYVCRCRIFIFDSALWCTVDFKEVRLVFNNLCM" FT gene 880..2544 FT /gene="HSP70h" FT CDS 880..2544 FT /codon_start=1 FT /gene="HSP70h" FT /product="heat shock protein 70" FT /note="ORF7; may be required for virus movement and virion FT assembly" FT /db_xref="GOA:I6LK08" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR018181" FT /db_xref="InterPro:IPR029047" FT /db_xref="UniProtKB/TrEMBL:I6LK08" FT /protein_id="ADA61211.1" FT /translation="MEAKAGLDFGTTFSTISAYVGGTMKVLRINGSEFIPTCLSITKSG FT DVIVGGAAQVLDASQLPHCYFYDLKRWVGVDRLSFEEIKRKIAPQYSVKLEGNDVLITG FT IDKGYTCTYTVKQLILLYVDTLVRLFSNVEKLKILSLNVSVPADYKTKQRMFMKSVCES FT LGFPLRRIINEPSAAAIYSISKHPGFDYFLVYDFGGGTFDTSLIAKDGKFVTVADTLGD FT SFLGGRDIDKAILAFITRTNNLVSPLSADSLAAIKEEVNSTGKSSFNVLDTTGNIVFVK FT FSSEDLDKIVSKFTSKSLKILKAIADRNKITSGALFLVGGSSLLRKVQSDVSNFSKSIG FT LTPIIDKDLRSAVSYGCSMMHAQEDSGSMIYIDCNSHPLMDISLFANPRVIIRKPMSVP FT FSYKTTRTIKQHINTAINVYEGSSLFVLDNDWLVSANVNTQDFVQSGQDLSFVYKYNVD FT GILDLFVRNETTGVESLLPNSFALTEKVNKLDLNLTQLSSVDELATVVSILSHFDSSFS FT DLLKLVNTPSIFEASCSKFGDLRSLYDRLISFNTNFS" FT CDS 2566..4122 FT /codon_start=1 FT /product="p60" FT /note="ORF8; putative movement protein" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:I6LK09" FT /protein_id="ADA61212.1" FT /translation="MAQPILHSDFVKETFKYAFKKNDVREYLQRLNEVMLSKCDIINGK FT SYKFNFQGKTFSLNSKYYVRGGDVYVNTEDPLEVLKLLSVYLYYVEPKYIELSPYSPES FT LFGNPNYMKAVKTWKPYYDKSMNEYLSDRSEVGCIYTMDGHRLRLNSMNETRKITLYRV FT CNSLGKMIDLKELSSGTLKAFEVKTSDVGQAVMTTTSSNALFAECVKVFKDYIVLNSTK FT AGREKIEVNRKFLNSFLRCLSPKEELGNLGENPLLIAWFMREFTDRTRTSSGFRDNYKA FT VVELSRPMLKFLKDVFLKNLSLDEDSLFITFPKNSVVEIVDQVIPLANFHRNQTLPTPM FT SNSCDLPREIDAIVSESIIKYLSKFVKTDGDLLLDAFLFVLGRSTTNQQRWTSGFEIDF FT KVIGSRIRFDSRDLWSYLNDAVKTKRPKFRTHNIIRQWANNRGDRARVMFKICGYKPGL FT FGTIPRIDEHMRFDFFKLMNLRMMSESEKVSYYTLRLMTESKSNNSDKDFCKLISWISA FT S" FT CDS 4104..4325 FT /codon_start=1 FT /product="p8" FT /note="ORF9" FT /db_xref="UniProtKB/TrEMBL:I6LK10" FT /protein_id="ADA61213.1" FT /translation="MDFSELIEQHGIEKISNLVSRLVEIRRTGRGLTNLLLDIINDSFV FT HFDSKRSPCGLEKEDYILVLQIITLLRV" FT CDS 4353..5126 FT /codon_start=1 FT /product="major coat protein" FT /note="CP; ORF10" FT /db_xref="GOA:I6LK11" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:I6LK11" FT /protein_id="ADA61214.1" FT /translation="MADSTKVEEKNFDSDSDLETNPKNKLQSEYASRRDVQTEGTAGLG FT RRDMELTSGILTSDQLALARLGKIQVYSNSPDIMSKSQEDEFKRHMENFAKVVTGEATI FT TPEIFAAFYASLIQAWANQSTSEKNASNVNLENMFMVDGKEYSWKTHNFINHIQSNMPD FT VKNAIRKWARAHANDYKVLVGMGIVKPDYHLQAKQGVLPEYWHLATDFMRGNDLATTAD FT GLAATLMMKRNALCNKDSKNSVYNVTQLTGTGLHC" FT CDS 5129..7183 FT /codon_start=1 FT /product="minor coat protein" FT /note="mCP; ORF11; structural protein; putatively required FT for movement and vector transmission" FT /db_xref="GOA:I6LK12" FT /db_xref="UniProtKB/TrEMBL:I6LK12" FT /protein_id="ADA61215.1" FT /translation="MEELDDSVSNTIVDNYSDDEQSVVARASGCELNQDYLLPYKDKEQ FT VDLSISYSSALRTKPVSVKLYFHIGKGFVVYSCKPVENFNQKVYESNLGAFFSSFTNLV FT TPRKPRGTNAFRFGYLRAGNDCFILVEGWRIVQIPNAEKIVGVTLRLTLDIDEVQFSKS FT GKLVGNIIDLPSCLNSTRPSDLFSNLKPSSVTLFSLSTKDSVNVQPSKTIPLSKIESAV FT DLDLKPFRNDGETNPDKNLTEIDTLKKTMGAEEDKEKIFRIYYSNFLDSGFNGSLSYQI FT MWPNISCDGMSVNHQFWLGDRDDMLEGGVQYIHTEPAHRLFFVHRRGDVSEYYKTDEAS FT VNKVLNSLPTELRFVLTRGSDGKFVVSVNEIVFLTTVLPKVGSKVQIGWEIKIFKEKFK FT GFNRERLSTFETVPRESQVKSNGELVNLRKYDFEMTESDACGWNLKRKSGLRLRNIRNA FT TEMLAQDDVKEPPVDNNNMKPDRESIPEKKVELEELTERVDNQKEKFEEFALKAIVYQP FT ISKIDDERIFNSIIKHYVSKGLSSWQAELVVYQMGVSFCTSVNSCANSNLNLIVTKSDG FT SFLRVSKADHVMRLQLLCNKYCNVERTLLRNRSDKIFRLLKAGILTPPFRHARNRGLKS FT DTAHMACDFMDYSTIPLSDEENLALTSIQRYVLMKNKHRRSIVNVNQLY" FT CDS 7188..7916 FT /codon_start=1 FT /product="p28" FT /note="ORF12" FT /db_xref="UniProtKB/TrEMBL:I6LK13" FT /protein_id="ADA61216.1" FT /translation="MSGWDGLPVNNSYAMSTNRSDDDIARICARTFNRAINLLTEYSQH FT TVPELRESRFELGCIRSLCENDDFSINLGAENSNLFQGLNKLGVRSDSLRVNSERFFPS FT ISSKVMTNVIDSISSVLEFVIDLNHSGFSTLWVGEIMTIYDVTSFEKLVDAIYRFLAYT FT YNFPEEVQFHMTLNLFNDDILKILNKAKRKLRPLTDSERIVMAKSITKGLHFEFHFTYR FT SLGLYLPKVTNSIMICNKNR" XX SQ Sequence 8108 BP; 2481 A; 1347 C; 1732 G; 2548 T; 0 other; gaaatactac ccaggttttt ccatgagtaa tgcttttagc ttaagctcat accattggtt 60 gtcgtcatga ctcgcattta tgcgatgagt gactcaatct cttcgggagt ctatgggact 120 ttgttatctg agaactcgca ttagtgcgac gtatcagatg caaagtgact gcccgtcata 180 tctttatttt tatgcgttat aaaaatcaaa aacacaaaaa tataacatct tctcctagag 240 aagtatctac taatatatct agctcagccc accaaacgga acaaaacttt ttgagcaata 300 ataggattac accattgggc cgggagtaat caatgttttc agtggtttca ttcaaaacca 360 cttcccctta taaggagtct tacgatcctc cagtaccccc cacacatgaa tttgatagtt 420 tttgcccaag tgtggtatgt atgtcgttgt cgtatattta tatttgacag cgcattgtgg 480 tgtactgtag attttaagga ggttcgattg gttttcaata atctctgtat gtaaattatt 540 tctgttagaa agtggagttt gttgcaaaac tgtctggttc gtaaataggt accactactc 600 ttttcatttg attttctgtt aaaataagat tggtatgttc taaatctgta taaacacaca 660 tttagtttta atcttattgt tctatgtttc ctgtgatata gtgttaactt aaaatctgta 720 gaaatacatg tttagttttg atcttattgt tctatgttac ctgtgatgta gtgctaactc 780 aaaagttcac aattgttctc cttcaatttg tttattcttg attgattgta tagtgttggt 840 attttgattt attcacttat tgatttatat taatttgtca tggaagctaa ggctggtctc 900 gatttcggta ctactttcag taccatatcg gcgtatgttg gtggtactat gaaagtcctt 960 cgaatcaacg gatcggaatt tatcccaacg tgtttatcta ttactaagag tggtgatgta 1020 atagtcggtg gtgctgcaca agtgttagat gcttctcaac taccgcactg ttacttctac 1080 gatctaaaac gatgggttgg ggttgatagg ctgtcttttg aagaaatcaa acgtaagata 1140 gctccccagt attcggtcaa attggaaggt aatgatgttc tgataactgg tattgataag 1200 gggtatacat gtacatatac agttaaacaa ttaattcttc tttatgtaga tactcttgtt 1260 aggttgtttt ctaacgttga gaagcttaag attttaagtc tcaatgtgtc cgtcccggca 1320 gactacaaaa caaaacaaag aatgtttatg aaatctgttt gtgaatcgtt aggttttcct 1380 ttacgaagaa taataaacga gccttctgct gctgcgatat actcaatatc taaacatcct 1440 gggttcgact atttcttagt ttatgatttc ggtggtggga cttttgacac ttctttgata 1500 gcgaaagatg gaaagttcgt cactgtggct gatacactgg gagattcgtt tctcggaggt 1560 agagacatag ataaggctat tttggctttt atcacgcgta cgaacaattt ggtttctccg 1620 ttgtcagccg actctcttgc tgctattaaa gaagaggtga attcaactgg gaagagttcc 1680 tttaatgtac ttgatactac cggcaatatt gtttttgtca aattttcgag tgaggattta 1740 gataagatcg tgtccaagtt cacgtctaag agcctgaaga ttttaaaggc tattgctgat 1800 agaaataaaa tcacttctgg tgctctgttt cttgttggcg gatcctcgtt actgcggaaa 1860 gtgcaatctg acgttagtaa tttttccaag tcgattggac tgactcccat aattgacaaa 1920 gacttaaggt ctgccgtgtc ttatggttgt tctatgatgc atgcacagga agacagtgga 1980 tccatgatat atattgactg taattcacat ccattaatgg acatatcact ttttgccaat 2040 ccgagggtca ttattaggaa accgatgtcc gtcccctttt cttacaagac cactcgaaca 2100 attaagcagc atataaacac tgcgataaac gtgtatgaag gttctagttt gtttgtacta 2160 gataatgatt ggttagttag tgcaaatgtg aatacacaag attttgttca atcagggcaa 2220 gatttatctt ttgtatataa atacaatgtt gatggaattc tagatttatt tgtgagaaat 2280 gagactactg gggtcgagag tttattaccg aattcgtttg cattgaccga aaaagtaaat 2340 aagttagatt taaatttaac acagctgtca agcgttgacg aactggcaac tgttgtttcc 2400 attctaagtc attttgattc gagtttttct gatttgttga aattggtaaa tacaccatct 2460 atttttgaag catcttgtag caagtttgga gacctacgtt ctctttacga tcgtttgatt 2520 tctttcaata caaacttttc ttgagatata atttgcaggt tttagatggc tcaacctatc 2580 ctccattctg attttgtgaa agaaactttt aagtatgctt tcaagaaaaa tgacgttagg 2640 gagtaccttc aacgccttaa cgaagtaatg ttgagcaaat gtgacattat taatggaaag 2700 agttacaaat ttaatttcca aggtaagacg ttttcgttga actctaaata ctatgttaga 2760 ggaggagacg tttacgtcaa caccgaagat cccttagaag tgttgaaatt gttgtctgta 2820 tacttatatt atgtggagcc gaagtatatt gaattgtcac cttacagtcc tgagagttta 2880 tttggtaacc caaattacat gaaagctgtg aagacttgga aaccgtacta tgataagtct 2940 atgaacgagt acttgagtga caggagtgag gttggttgta tttacaccat ggacggacat 3000 cggttgagac taaactccat gaatgaaact cgaaaaataa cactgtacag ggtttgtaac 3060 tctttaggaa aaatgataga tcttaaagag ttgagtagtg ggacgcttaa agctttcgaa 3120 gttaagactt cagatgtcgg acaggcggtc atgacgacaa cgtccagtaa cgctctcttc 3180 gccgaatgcg ttaaagtgtt caaggactac attgttttga actcaactaa agcagggaga 3240 gaaaagatag aggtaaatag aaaattttta aattcttttc ttcgttgttt atctcccaag 3300 gaagaactcg gaaacttagg agaaaatcca ttgttgatag cctggttcat gcgagagttc 3360 acggatagga cgagaacaag ttcaggattt agagataatt ataaggccgt cgttgaactt 3420 agtcgtccta tgctgaagtt tttgaaggac gtgtttctca agaatttaag tttggacgaa 3480 gattctctgt ttataacatt tccgaagaat tctgtggtgg agattgtaga tcaagtgata 3540 cccctagcta atttccacag gaatcaaacc ttacccacac ccatgagtaa ttcctgtgac 3600 ctaccacgtg aaatagacgc cattgtctcg gagtctataa taaagtacct gagtaagttt 3660 gttaaaacag atggagactt actacttgat gctttcttat tcgtgttagg tcgaagtact 3720 acaaatcagc agcgttggac atccggattc gagatagatt tcaaagtcat cggttcgaga 3780 atacgttttg actcacgaga tttatggtct taccttaatg atgcagtcaa gacaaaacgt 3840 ccgaagtttc gaacgcacaa cattattaga cagtgggcta acaatcgcgg tgacagagcg 3900 cgtgtaatgt tcaagatatg tggttacaaa ccaggtttgt tcggtaccat tccaagaata 3960 gacgaacaca tgagatttga ttttttcaaa ctcatgaatt tgaggatgat gtccgaatca 4020 gaaaaggtat cttattacac tcttcgtctt atgactgaga gtaaatcgaa taatagtgat 4080 aaagattttt gtaaattaat ttcatggatt tcagcgagtt aattgaacaa cacggaatcg 4140 agaagatttc taacttggta tcgcggttgg tagagatcag acgaaccgga cggggtctca 4200 ccaatttgtt gttagatatt atcaatgaca gttttgtcca cttcgattca aaaagatctc 4260 cgtgtggtct tgaaaaagag gattacattt tagtattaca gatcattacg ttgttgcgtg 4320 tttaagtaac cgaactaagc agtgagacga gtatggctga tagcactaaa gtcgaagaga 4380 agaactttga ttccgactca gatttggaaa ctaacccaaa gaataaacta cagtccgagt 4440 atgcgtctcg tcgtgacgtc cagactgaag gaacggctgg tttgggaaga cgagatatgg 4500 agttaactag tggtattctt acctcagacc agttagctct tgcaagattg ggtaagatcc 4560 aagtatattc caattctcca gatattatgt caaagagtca agaggatgag tttaagcgtc 4620 atatggagaa cttcgcaaaa gtcgtgactg gtgaggctac aataacgcca gaaatttttg 4680 cagcgtttta tgcatcgtta attcaggcat gggcaaatca gagtacgtcc gaaaagaatg 4740 cttcgaacgt aaatcttgag aatatgttta tggtcgacgg gaaagagtat agttggaaga 4800 ctcacaactt tataaaccat attcaatcta acatgccaga tgttaagaac gccataagga 4860 agtgggcaag ggctcatgca aatgattaca aggtccttgt tggtatgggt attgttaagc 4920 ccgattacca tttacaggcg aaacagggtg tcttacctga atattggcat ttggccactg 4980 atttcatgag aggtaatgat ttggcgacaa ccgcagatgg gctggctgcg actttgatga 5040 tgaaaaggaa cgctctttgt aacaaggata gtaagaattc tgtctacaac gttactcagt 5100 tgactggaac aggtcttcac tgttgaagat ggaagagtta gatgacagtg taagtaacac 5160 cattgtagat aactattcag atgacgaaca atcggttgtt gctagggcaa gtggttgtga 5220 attaaatcaa gactacttac taccctataa agataaagaa caagttgatc tgtctatcag 5280 ttacagttca gcacttagaa caaaacctgt aagtgtcaaa ctttatttcc atataggtaa 5340 aggttttgtg gtttattctt gcaaaccagt tgagaacttc aatcaaaaag tttacgagtc 5400 aaatttgggc gcattcttct cgtctttcac taatttagtg actcctcgaa aacctagagg 5460 aactaatgct ttcagatttg ggtatttgcg tgctggtaat gattgtttca tcttggttga 5520 aggttggagg attgttcaaa taccgaatgc tgagaaaatt gttggtgtga cattaagact 5580 gactcttgac atcgatgaag tacagttctc gaaatctggt aagttggtcg gcaatataat 5640 agacttgccg tcgtgtttaa acagcactag accgagtgac ttgttttcca atttaaaacc 5700 tagtagtgtt acattgtttt ctttgtctac taaggacagt gtgaatgtgc aaccgtcaaa 5760 aacgatccca ttgtcaaaaa ttgagagtgc tgtggactta gatctaaaac cgtttcgtaa 5820 tgatggtgaa acgaatccgg ataaaaatct aactgaaata gacactctta agaaaactat 5880 gggtgccgaa gaggataagg agaaaatatt ccgtatctac tattcaaatt tcttagacag 5940 tggtttcaat ggttctcttt catatcaaat aatgtggccg aatatatcct gtgacgggat 6000 gagtgtaaac caccaattct ggttgggaga cagagatgat atgttagaag gtggtgtgca 6060 atatattcat actgaacccg cacatagatt attcttcgta cacagaagag gagatgtttc 6120 agaatattat aagactgatg aagcttctgt taataaggtc ttgaattccc ttccaaccga 6180 acttagattc gttttaacaa gaggatcgga tggcaaattc gtagtgagtg taaacgaaat 6240 tgtcttctta acgacagtct taccaaaagt tggcagtaaa gtacagatcg gatgggaaat 6300 aaaaattttt aaagaaaaat ttaaaggatt caaccgagaa agactttcaa cttttgaaac 6360 cgttcctcgt gagtctcagg ttaaatcaaa tggtgagctt gtcaatctga ggaaatatga 6420 tttcgagatg acagaatctg acgcatgtgg ttggaatctg aaaaggaaat caggactgag 6480 acttcggaac attaggaatg cgactgagat gctggcgcag gacgatgtaa aagaaccacc 6540 agtagataac aataacatga aacccgatcg cgaatccata cctgagaaaa aggtggagct 6600 ggaagaacta actgaaaggg ttgacaatca gaaagaaaaa tttgaagaat ttgcgttaaa 6660 agctatcgtg taccaaccga tatctaaaat tgacgatgaa cgtatcttca attcgatcat 6720 caaacattat gtgtcgaaag gattgtcgag ttggcaagcc gaactcgtag tatatcaaat 6780 gggtgtttca ttttgtacga gtgttaatag ttgtgctaat tccaacttga accttatagt 6840 aacgaaatca gatggatctt tcttaagggt gtcgaaggca gatcatgtta tgagactgca 6900 attgttgtgt aataaatatt gcaatgttga acgtactctg ttgcggaata gaagtgataa 6960 aatatttaga cttctcaagg ctggtattct cacaccacca tttagacatg ctcggaacag 7020 aggtttgaaa tccgacacgg ctcacatggc ctgtgacttt atggattatt ctacgatacc 7080 gttaagtgat gaagagaatt tggctcttac ttctattcaa aggtacgtgt taatgaaaaa 7140 caaacaccgc aggtctattg ttaatgtgaa tcagttgtac tagtgaaatg tctggttggg 7200 atggtcttcc ggttaacaac tcttatgcca tgagcacgaa cagaagtgac gatgacatag 7260 cgaggatctg tgccagaaca ttcaatcggg caattaatct cctgaccgaa tactctcaac 7320 atacagttcc tgaacttcgg gagagtaggt ttgagttggg ttgtatccga agtctttgtg 7380 aaaacgatga cttcagtatt aaccttggtg cagaaaatag taatctgttt caaggattaa 7440 acaagcttgg ggtcagatca gactcattga gggtaaacag tgagagattc ttcccctcaa 7500 tttcgagtaa ggtcatgaca aatgtgatcg attctatctc ctctgtcttg gagtttgtga 7560 ttgatttgaa ccactctgga ttctcaacct tgtgggtggg tgaaataatg actatttatg 7620 acgtaaccag tttcgaaaaa ttggttgacg cgatatatcg gtttttggca tacacgtaca 7680 atttcccaga agaggtacaa tttcacatga cattgaattt gttcaatgat gatatattaa 7740 agatacttaa taaagccaaa agaaagcttc gaccactcac cgacagtgaa aggatcgtaa 7800 tggctaaaag tatcaccaaa ggactccatt tcgagttcca ttttacatat aggtctttgg 7860 gtttatatct tcccaaagtc actaatagca taatgatatg taataaaaac cgttaaagat 7920 attagggtat gtttgataaa tgtttttatc ctagagtcgt ataccgagag tatctcgaga 7980 gtgtgctata aaatctcaaa aaatatatgt attgtgttca tgattttatt taaagcgtgt 8040 gcataatcgg ttttcctaaa tcatcgtttg atggaccttg gaaaacctag tatttaaata 8100 actaggcc 8108 //