ID FJ795780; SV 1; linear; genomic RNA; STD; VRL; 4223 BP. XX AC FJ795780; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate HOM91 polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4223 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4223 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (25-FEB-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; 5e3fd9962071e9c9fe28f9461f62ba24. XX FH Key Location/Qualifiers FH FT source 1..4223 FT /organism="Sweet potato feathery mottle virus" FT /host="Lepistemon owariensis" FT /isolate="HOM91" FT /mol_type="genomic RNA" FT /country="Uganda:Hoima" FT /db_xref="taxon:12844" FT CDS <1..4002 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U7M2" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E1U7M2" FT /protein_id="ACY74512.1" FT /translation="GATSCVLHQTKDALSKHLRLKGVWNKSVITQDLFILAGVFAGGLW FT MIMAGLKESFDQTVLHQGKEKRQMQKLKFRKARDNKLGFEVHADDGTIEHFFGSAYTKK FT GKQKGKVTGMGSKNRKFINMYGFDPTEYSFVRFVDPLTGAVIDDSPYTDILLVQEKIGE FT ARLNAIKEDELSREKVAQNPGIHAYYINEITNAALKVDLTPHNPLLACERHSTIAGHPE FT YEGVLRQTGPPIKMTFNDVPVNPEEASLVGHESKSLFRGLRDYNPIASVICHLMNEADG FT RTSDCFGIGYGGLIITNRHLFKRNNGTLTIKSRHGEFVIKNTTQLGMKPCADRDILIIR FT MPKDIPPFPQRIKFRVPKENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWID FT TKDGHCGLPLVSTTDGALLGVHSLSNLTNTQNFFASFPENFEAEYLRTPEAMEWIKKWS FT YNPDEICWGTLELKTGQPATPFKVSKLITDLEGIQVYAQTRSDKWVQDRLYGNLKAVGQ FT CPAQLVTKHVVKGKCMLFDLYLQQDQSEREYFKPLMGAYGKSRLNKEAYNKDLFKYATQ FT IQAGDVQVDTFELAEKSVISMLTAKGFEKCNYVTDPEEILKALNMKAAVGAMYSGKKKE FT YFEGMSEHDIESHLFHSCKRLFMGQKGLWNGSLKAELRPIEKVDLNKTRTFTAAPLDTL FT LGGKVCVDDFNNMFYNHHLKCPWTVGITKFYQGWDRLLTSLPEGWIYCDADGSQFDSSL FT SPYLINSVLNIRREFMEDWDVGDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPST FT VVDNTLMVVLAVHYTLLKLGIQESEFDECCVFFANGDDLLLAMRPDTAHLLDAFSECFS FT ELGLNYDFSSRTNKRENLWFMSHCGVKRDGIFIPKLEPERIVSILEWDRSHEPIHRLEA FT ICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARSGKAPYIAKTALKALYTGIQPSV FT SELSVYTRVLNEMYDDSMLQENELEVYHQSSEKTEFKDAGADPPAPKPKINPPPPTITE FT IVDPEDPKQAALKAARAKQPATIPESNGRDTSKERESIVGTSSKGVRDKDVNVGTVGTF FT VVPRVKKNANKKRQPMVNGRAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDY FT GVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIM FT THFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQ FT MKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ" FT mat_peptide <1..27 FT /product="cytoplasmic inclusion protein; CI" FT mat_peptide 28..186 FT /product="6K2 protein" FT mat_peptide 187..762 FT /product="VPg protein" FT mat_peptide 763..1491 FT /product="NIa-Pro protein" FT mat_peptide 1492..3054 FT /product="nuclear inclusion body; NIb" FT mat_peptide 3055..3999 FT /product="coat protein; CP" XX SQ Sequence 4223 BP; 1364 A; 795 C; 985 G; 1079 T; 0 other; ggagccacct cttgtgtgct tcatcaaaca aaagatgcac tctcaaagca ccttcgtttg 60 aaaggagtat ggaataaatc agtcatcaca caggatttgt tcattttagc aggggtattt 120 gctggtggtt tgtggatgat aatggcgggg ctaaaggagt cattcgatca aactgtgtta 180 caccaaggaa aagaaaagcg acaaatgcaa aagctgaagt ttaggaaagc gcgagataat 240 aaacttggat tcgaagtgca cgctgacgat ggaaccatcg aacacttctt tggtagcgca 300 tacaccaaga aagggaaaca aaaaggaaag gttactggaa tgggatcaaa gaacagaaag 360 tttataaaca tgtacggatt tgatcctact gaatattcct ttgtccgatt tgttgacccg 420 ttaactggag ctgtgataga tgattcccca tacacagata ttcttcttgt tcaggagaaa 480 attggtgagg ctcgtttgaa tgccatcaaa gaagatgaac tttcaagaga gaaagttgca 540 caaaatccag gaattcatgc atactatatc aatgaaatca caaatgctgc actcaaagtt 600 gatctcacac cgcacaatcc actacttgca tgtgaaagac atagcactat tgccggtcat 660 cctgaatatg aaggagtttt gagacaaacc ggacccccaa ttaagatgac atttaatgac 720 gtgccagtga atcctgaaga ggcaagtttg gtcgggcatg agagcaagtc actattcaga 780 ggcttgaggg attacaaccc aatagcaagt gttatatgtc acctaatgaa tgaagcggat 840 gggagaacaa gtgattgctt tggaatcgga tacggtggtc tcattataac aaataggcat 900 cttttcaaaa ggaataatgg cacattaaca attaaatctc gacatggaga atttgttatc 960 aagaacacaa cccaacttgg gatgaaacct tgtgctgaca gggacatact catcattagg 1020 atgcctaagg atatacctcc gtttccacaa cgaatcaagt ttagggtccc aaaggagaac 1080 gaaagaattt gcttggttgg gtcaaatttt caagacaaat caattacaag cacgatctct 1140 gaaactagtg tcacatgtca cgtgccaaac tcacattttt ggaagcactg gattgacacg 1200 aaggatgggc attgtggcct ccccttagtg agcactactg atggtgctct attgggagta 1260 cacagcttgt caaatttgac aaatacccaa aacttctttg cctcgtttcc tgagaatttt 1320 gaagcggagt acttgaggac tcctgaggca atggagtgga taaagaaatg gagctataac 1380 ccagacgaga tttgttgggg aacgttggaa ttgaagacag gacaacctgc tacccccttc 1440 aaagtgtcca aactgatcac ggatctagaa ggaatacaag tgtatgccca gacaaggtca 1500 gacaaatggg tccaggatag attgtatggc aatctcaaag cagttggtca atgccctgca 1560 cagttagtga ctaaacatgt tgtaaagggt aaatgcatgc tattcgatct ctacttgcaa 1620 caagaccaat ctgaaaggga atacttcaaa cctctcatgg gagcatatgg gaaaagtagg 1680 cttaataagg aggcttacaa taaggatcta ttcaagtacg caacgcaaat tcaagcgggt 1740 gatgtgcaag tggatacatt tgaactggcg gagaaatctg ttatctccat gctcacagca 1800 aaaggatttg aaaaatgtaa ttatgtcaca gacccagagg agattttgaa agcattgaat 1860 atgaaagctg cagtcggcgc gatgtacagt ggaaagaaaa aggaatattt tgaagggatg 1920 agtgaacatg atatagaaag tcatctcttc cacagttgca agcgtttgtt catgggacag 1980 aaaggtctct ggaatggatc tttgaaagcc gagttgagac ctattgaaaa agtggatctc 2040 aacaagacaa gaaccttcac agcggcccct cttgacacac tacttggtgg taaagtgtgt 2100 gtagatgatt tcaataacat gttttacaac caccacttaa agtgtccatg gacggtagga 2160 ataactaaat tctaccaagg gtgggataga ctcctcacgt ctctacctga gggatggata 2220 tattgtgatg ctgacggctc acagtttgat agttctctct ccccatattt gatcaattca 2280 gttttgaaca taagaagaga gtttatggag gattgggatg ttggtgatca aatgcttcga 2340 aatttataca cagaaatagt gtacacacca atactaacac cagatggaac catagtgaag 2400 aaattcaagg gtaataatag tggacaacca tctactgtgg ttgacaacac acttatggtt 2460 gtattagcag tacactacac actgctaaaa ctaggcatcc aagaaagtga atttgatgaa 2520 tgctgtgtct ttttcgcgaa tggtgacgat ttattattgg caatgaggcc agatacagcc 2580 catttactgg atgcatttag tgagtgcttc tctgagttgg gactcaacta tgacttttca 2640 tcgcgaacaa ataagagaga gaatttatgg ttcatgtcgc actgtggagt gaaacgcgat 2700 ggaatattca ttccgaagtt ggagcctgaa agaatagtct ccattcttga gtgggatcgt 2760 tcacacgagc ctattcatcg actggaagca atatgtgccg caatggtgga atcatggggt 2820 tatgatgaac ttcttcatca tatcagaaaa ttctacgcat gggtcttgga ccaagcccca 2880 tacaatgaat tagcacgaag tgggaaggca ccatacatag ctaaaactgc actcaaagca 2940 ctctacactg gtattcaacc tagtgtttct gaactgagtg tgtatacaag agtgcttaat 3000 gaaatgtacg atgatagtat gcttcaagag aatgagttgg aagtgtatca tcaatctagt 3060 gagaaaactg aatttaaaga tgctggagcg gaccctccag cccctaagcc caagatcaat 3120 cctccaccac ctacaataac tgagatcgtt gatccggagg acccgaagca agcagctttg 3180 aaagctgcac gagcaaagca acccgcgacc attccagaat caaatggacg agacacgagc 3240 aaagaaaggg aatcaatagt gggaacatca tcaaagggtg tgagggataa agacgttaat 3300 gttggcaccg ttggtacatt tgttgtgcca cgtgttaaga agaatgcaaa taagaaaagg 3360 caaccaatgg tcaatggaag ggccattata aatttccagc acttgtcaac atatgaacca 3420 gagcagtttg aagttgcaaa cacccggtcg acccaagaac aattccaagc atggtatgag 3480 ggagttaaag gggattacgg tgttgacgac acagggatgg ggatcttatt gaatggacta 3540 atggtttggt gcatcgaaaa tggcacatcc ccaaatataa atggtgtgtg gacaatgatg 3600 gacggtgatg aacaagtgac atatccaatt aaaccattat tggaccatgc agtgcctact 3660 tttaggcaga ttatgacgca cttcagtgac gttgctgaag cttacataga aatgcgaaac 3720 cgtacaaagg cgtacatgcc aaggtatggt ctacaacgta atttgactga tatgagtctt 3780 gcacgatatg catttgattt ttacgagctg cattcaacta cacctgcacg tgctaaagaa 3840 gcacatctac agatgaaagc agccgcactt aagaatgcgc gaaatcggtt gtttggtttg 3900 gacggaaacg tctccacgca agaagaagat acggagaggc acacgacaac tgatgttact 3960 agaaatatac ataacctctt aggaatgagg ggtgtgcaat aggacatcct ctgcactgta 4020 gcttatacct atgttatctt tagtatgcct ttaatttaaa ttcgtgtctt tcagtcccga 4080 aggagatggt tgaatgcata acatggtggg attatatctc ggttattgca tttgagaagt 4140 cacctttcta ttacgtatca taagggactc ttaaaagtga ggagtacctc gtaagaaaag 4200 cctttttggt tcgtgatcga gcc 4223 //