ID FJ795779; SV 1; linear; genomic RNA; STD; VRL; 4223 BP. XX AC FJ795779; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate ARU60a polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4223 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4223 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (25-FEB-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; cdd005ff989f2148515f4dca95b87e7f. XX FH Key Location/Qualifiers FH FT source 1..4223 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea batatas" FT /isolate="ARU60a" FT /mol_type="genomic RNA" FT /country="Uganda:Arua" FT /db_xref="taxon:12844" FT CDS <1..4002 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U7M1" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E1U7M1" FT /protein_id="ACY74511.1" FT /translation="GATSCVLHQTKDALSKHLRLKGVWNKSVITQDLFILAGVFAGGLW FT MIMAGLKESFDQTVLHQGREKRQMQKLKFRKARDNKLGFEVHADDRTIEHFFGSAYTKK FT GKQKGKVTGMGSKNRKFINMYGFDPTEYSFVRFVDPLTGAVIDDSPYTDILLVQEKIGE FT ARLNAIKEDELSREKVAQNPGIHAYYINEITNAALKVDLTPHNPLLACERHSTIAGHPE FT YEGVLRQTGPPIKMTLNDVPVNPEEASLVGHESKSLFRGLRDYNPIASVICHLMNEADG FT RTSDCFGIGYGGLIITNRHLFKRNNGTLTIKSRHGEFVIKNTTQLGMKPCADRDILIIR FT MPKDIPPFPQRIKFRVPKENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWID FT TKDGHCGLPLVSTTDGALLGVHSLSNLTNTQNFFASFPENFEAEYLRTPEAMDWIKKWS FT YNPDEICWGTLELKTGQPAAPFKVSKLITDLEGIQVYAQTRSDKWVQDRLYGNLKAVGQ FT CPAQLVTKHVVKGKCMLFDLYLQQDQSEREYFKPLMGAYGKSRLNKEAYNKDLFKYATQ FT IQAGDVQVDTFELAEKSVISMLIAKGFEKCNYVTDPEEILKALNMKAAVGAMYSGKKKE FT YFEGMGEHDIESHLFHSCKRLFMGQKGLWNGSLKAELRPIEKVDLNKTRTFTAAPLDTL FT LGGKVCVDDFNNMFYNHHLKCPWTVGITKFYQGWDRLLTSLPEGWIYCDADGSQFDSSL FT SPYLINSVLNIRREFMEDWDVGDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPST FT VVDNSLMVVLAVHYTLLKLGIQESEFDKCCVFFANGDDLLLAMRPDTAHLLDKFGECFS FT ELGLNYDFSSRTNKKEDLWFMSHCGVQRDGIFIPKLEPERIVSILEWDRSHEPIHRLEA FT ICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARNGKAPYIAETALKALYTGVQPNA FT SELSVYTRVLKEMYDDSILQENDLEVYHQSNERTEFKDAGVNPPAPKPKDVPPPPTITE FT ITDPEDPKQAALKAARAKQPAVIPESYGRDTSKERESIVGASSKGVRDKDVNVGTVGTF FT VVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDY FT GVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIM FT THFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQ FT MKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ" FT mat_peptide <1..27 FT /product="cytoplasmic inclusion protein; CI" FT mat_peptide 28..186 FT /product="6K2 protein" FT mat_peptide 187..762 FT /product="VPg protein" FT mat_peptide 763..1491 FT /product="NIa-Pro protein" FT mat_peptide 1492..3054 FT /product="nuclear inclusion body; NIb" FT mat_peptide 3055..3999 FT /product="coat protein; CP" FT 3'UTR 4003..4223 XX SQ Sequence 4223 BP; 1367 A; 782 C; 978 G; 1096 T; 0 other; ggagccacct cttgtgtgct tcatcaaaca aaggacgcac tctcaaagca ccttcgtttg 60 aaaggagtgt ggaataaatc agtcatcaca caggatttgt tcattttagc aggggtattt 120 gctggtggtt tgtggatgat aatggcgggg ttaaaggaat cattcgatca aactgtgcta 180 caccaaggaa gggaaaagcg acaaatgcaa aagctgaagt ttaggaaagc gcgagataat 240 aaacttggat tcgaagtgca cgctgacgat agaactatcg aacacttctt tggtagtgca 300 tacaccaaga aagggaaaca aaaaggaaag gttactggaa tgggatcaaa gaatagaaaa 360 tttataaaca tgtacggatt tgatcccact gaatattcct ttgtccgatt tgttgacccg 420 ttaactggag ctgtgataga tgattcccca tacacagata ttcttctcgt tcaggagaaa 480 attggtgagg ctcgtttgaa tgccatcaaa gaagatgaac tttcaagaga aaaagttgca 540 caaaatccag gaattcatgc atactatatc aatgaaatca caaatgctgc actcaaagtt 600 gatcttacac cgcataatcc actacttgca tgtgaaagac atagcactat cgccggtcac 660 cctgaatatg aaggagtttt gagacaaacc ggacccccaa ttaagatgac acttaatgac 720 gtgccagtga atcctgaaga ggcgagttta gttgggcatg agagcaagtc actattcaga 780 ggcttaaggg attacaaccc aatagcaagt gttatatgcc acctaatgaa tgaagcggat 840 gggagaacaa gcgattgctt tggaattgga tacggtggtc tcattataac aaataggcat 900 cttttcaaaa ggaacaatgg cacactaaca attaaatccc gacatggaga attcgttatc 960 aagaacacaa cccaacttgg tatgaaaccc tgcgctgaca gagacatact catcattagg 1020 atgcctaagg acatacctcc gtttccacaa cgaatcaaat ttagagtccc aaaggagaac 1080 gaaagaattt gcttggttgg gtcaaatttt caagacaaat caatcacaag cacgatctct 1140 gaaactagtg ttacatgtca cgtgccaaac tcacattttt ggaagcactg gattgacacg 1200 aaggatggac attgtggcct ccccttagtg agtactactg atggtgctct gttgggagta 1260 cacagcttgt caaatttgac aaatacccaa aacttctttg cctcgtttcc tgaaaatttt 1320 gaagcggagt atttgaggac tcctgaggca atggattgga taaagaaatg gagctataac 1380 ccagacgaga tttgttgggg aacgttggaa ttgaagacag gacaacccgc tgccccattc 1440 aaagtgtcca aactgatcac ggatctagaa ggaatacaag tgtatgccca gacaaggtca 1500 gacaaatggg tccaggatag attgtatggc aatctcaaag cagttggtca atgccctgca 1560 cagttagtga ctaaacatgt cgtaaaaggt aaatgcatgc tatttgatct ctacttgcaa 1620 caagaccaat ctgaaaggga atacttcaaa cctctcatgg gagcatatgg gaaaagtagg 1680 cttaataagg aggcttacaa taaggatcta ttcaaatacg caacacaaat tcaagcgggt 1740 gatgtgcaag ttgatacatt tgaactggcg gagaaatctg ttatctccat gctcatagca 1800 aaaggatttg aaaagtgtaa ttatgtcaca gacccagagg agattttgaa agcattgaat 1860 atgaaagctg cggtcggcgc gatgtacagt ggaaagaaaa aggaatattt tgaagggatg 1920 ggtgaacatg atatagaaag tcatcttttc cacagttgca aacgtttgtt catgggacag 1980 aaaggtctat ggaatggatc tctgaaagcc gaattgagac ctattgaaaa agtggatctc 2040 aacaagacaa gaaccttcac agcagctcct cttgacacac tacttggtgg taaagtgtgc 2100 gtagatgatt tcaataacat gttttacaac caccacttaa aatgtccatg gacggttgga 2160 ataactaaat tctaccaagg gtgggataga ctcctcacgt ctttgcctga gggatggata 2220 tattgtgatg ctgacggctc acagtttgat agttccctct ctccatattt gatcaactca 2280 gttttgaaca taagaagaga gtttatggag gattgggatg ttggtgatca aatgcttcga 2340 aatttataca cagaaatagt gtacacacca atactgacac cagatggaac catagtgaaa 2400 aaatttaagg gtaataatag tggtcagcca tctactgtgg ttgataattc acttatggtt 2460 gtgttagcag ttcactacac attgctgaaa ctaggaatcc aagaaagcga gtttgataaa 2520 tgctgtgtct ttttcgcaaa tggtgatgat ttattgttgg caatgaggcc agatacagcc 2580 catttactgg ataagtttgg cgaatgtttt tctgaattag gactcaatta tgacttttca 2640 tcacgaacaa ataagaagga ggatctatgg tttatgtcac actgtggtgt gcaacgtgat 2700 ggaattttta ttccgaagtt ggagcctgaa aggattgttt caattcttga atgggatcgt 2760 tcacacgagc caattcatcg actggaagca atatgtgccg cgatggtgga atcatggggt 2820 tatgatgaac ttcttcatca tattaggaaa ttctatgcat gggttttaga ccaagcccca 2880 tacaacgaac tagcacgaaa tgggaaggca ccatacatag ctgaaactgc actcaaagca 2940 ctctatactg gtgttcaacc taatgcctct gaattgagtg tgtatacgag agtgctcaaa 3000 gaaatgtatg atgacagtat actccaagag aatgatttgg aagtatatca tcaatctaat 3060 gagagaactg aatttaaaga tgcaggagtg aaccctccag cccctaagcc taaggacgtt 3120 cctccaccac ccacaataac tgaaatcact gatccagagg acccgaagca ggcagctttg 3180 aaagctgcac gagcaaagca acccgcggtc attccagagt catatggacg agacacgagc 3240 aaagaaaggg agtcaatagt gggagcatca tcaaagggtg tgagggataa agatgtgaat 3300 gttggcaccg ttggtacatt tgttgtgcca cgtgtcaaga tgaatgcaaa taagaaaagg 3360 caaccaatgg tcaatggaag ggccattata aattttcagc acttgtcaac atatgaacca 3420 gagcagtttg aggttgcgaa cacccggtca actcaagaac agttccaagc atggtatgaa 3480 ggagttaaag gggattatgg tgttgacgac acagggatgg ggatcttatt gaatggacta 3540 atggtttggt gcattgaaaa tggcacatcc ccaaacataa atggtgtgtg gacaatgatg 3600 gatggtgatg aacaagtaac atatccaatt aaaccattac tggaccatgc agtgcctact 3660 tttaggcaga ttatgacgca cttcagtgac gttgctgaag cttacataga gatgcgaaac 3720 cgtacaaagg catacatgcc aaggtatggt ctacaacgta atttgactga tatgagtctt 3780 gcgcgatatg catttgattt ttacgagctg cattcaacta cacctgcacg tgctaaagaa 3840 gcacatttac agatgaaggc agccgcactt aagaatgcgc gaaatcggtt gtttggttta 3900 gacggaaacg tctctacgca agaagaagat acggagaggc acacgacaac tgatgttact 3960 agaaatatac ataacctctt aggaatgagg ggtgtgcaat aggacatcct ctgcactgta 4020 gcttatactt atgttatctt tagtatgcct ttaatttaaa ttcgtgtctt tcagtcccga 4080 aggagatggt tgaatgcata acatggtggg attatatctc ggtaattgca tttgagaagt 4140 cacctttcta ttacgtatca taagggactc ttaaaagtga ggagtacctc gtaagaaaaa 4200 cctttttggt tcgtgatcga gcc 4223 //