ID FJ795778; SV 1; linear; genomic RNA; STD; VRL; 4222 BP. XX AC FJ795778; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate RKI75 polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4222 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4222 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (25-FEB-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; 1532347ce07a5b475da941cebf40d578. XX FH Key Location/Qualifiers FH FT source 1..4222 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea batatas" FT /isolate="RKI75" FT /mol_type="genomic RNA" FT /country="Uganda:Rakai" FT /db_xref="taxon:12844" FT CDS <1..4002 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U7M0" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E1U7M0" FT /protein_id="ACY74510.1" FT /translation="GATSCVLHQTKDSLSKHLGLKGVWNKSVITQDLLILAGVFAGGIW FT MIMAGVKDSFDQIVLHQGKEKRQMQKLKFRKARDNKLGFEVHADDGTIEHFFGSAYTKK FT GKQKGKVTGMGSKNRKFINMYGFDPTEYSFVRFVDPLTGAVIDDSPYTDILLVQEKIGE FT ARLNAIKEDELSREKVVQNPGIHAYYINEITNAALKVDLTPHNPLLACERHSTIAGHPE FT YEGVLRQTGPPIKMTFNDVPVNPEEASLVGHESKSLFRGLRDYNPIASVICHLMNEADG FT RTSDCFGIGYGGLIITNRHLFKRNNGTLTIRSRHGEFVIKNTTQLGMKPCADRDILIIR FT MPKDIPRFQQRLKFRVPKKNERICLVGSNFQDNTITSTISETSVTCHVPNSHFWKHWID FT TKDGHCGLPLVSTTDGALLGVHSLSNLTNTQNFFASFPENFEVDYLKTPEAMDWIKKWN FT YNPDEICWGTLELKTGQPVAPFKVSKLITDLEGIQVYAQTKSDRWVQDRLHGNLKAVGR FT CPAQLVTKHVVKGKCMLFDLYLQQDQSEREYFKPLMGAYGKSRLNKEAYNKDLFKYATQ FT IQAGDVQVDTFELAERSVVSMLTSKGFEKCNYITDPEEILKALNMKAAVGAMYSGKKKD FT YFEGMSDHDVENHLFHSCKRLFMGHKGLWNGSLKAELRPMEKVELNKTRTFTAAPLDTL FT LGGKVCVDDFNNMFYNHHLKCPWTVGITKFYQGWDRLLTSLPEGWVYCDADGSQFDSSL FT SPYLINSVLNIRREFMEDWDVGDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPST FT VVDNTLMVVLAVHYSLLKLGIQESEFDKCCVFFANGDDLLLAMRPDTAHLLDKFGECFS FT ELGLNYDFSSRTNKKEDLWFMSHCGVKRDGIFIPKLEPERIVSILEWDRSHEPIHRLEA FT ICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARNGKAPYIAETALKALYTGVQPNA FT SELSAYTRVLKEMYDDSMLQENDLEVYHQSNERTEFKDAGANPPAPKPKDVPPPPTITE FT ITDPEDPKQAALKAARAKQPAVIPESYGRDTSKERESIVGTSSKGVRDKDVNVGTVGTF FT VVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDY FT GVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIM FT THFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQ FT MKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ" FT mat_peptide <1..27 FT /product="cytoplasmic inclusion protein; CI" FT mat_peptide 28..186 FT /product="6K2 protein" FT mat_peptide 187..762 FT /product="VPg protein" FT mat_peptide 763..1491 FT /product="NIa-Pro protein" FT mat_peptide 1492..3054 FT /product="nuclear inclusion body; NIb" FT mat_peptide 3055..3999 FT /product="coat protein; CP" FT 3'UTR 4003..4222 XX SQ Sequence 4222 BP; 1370 A; 763 C; 979 G; 1110 T; 0 other; ggagccacct cttgtgtgct ccatcaaact aaggattctc tctcaaaaca tcttggtctg 60 aagggagtat ggaacaagtc ggttattaca caggacctac ttattcttgc aggggttttt 120 gctggtggaa tttggatgat aatggcggga gtaaaggatt catttgatca aatcgtgcta 180 catcaaggaa aagaaaagag gcaaatgcaa aaactgaaat ttagaaaagc gcgagataat 240 aaacttggat tcgaagtaca cgctgatgat ggtactattg aacacttctt tggtagtgca 300 tacaccaaga aagggaaaca aaaaggaaag gttactggaa tgggatcaaa gaacagaaaa 360 tttataaaca tgtacggatt tgaccccact gaatattcct ttgttcgatt tgttgacccg 420 ttaactggag ctgtgataga tgattccccg tacacagaca ttcttcttgt tcaggagaag 480 attggtgagg ctcgtttgaa tgccatcaaa gaagatgaac tttcaagaga gaaagttgtg 540 caaaatccag gaattcatgc atactatatc aatgaaatca caaatgctgc acttaaagtt 600 gatctcacac cgcacaatcc actacttgca tgtgaaagac atagcaccat tgccggtcat 660 cctgaatatg aaggagtttt gagacaaacc ggacccccaa ttaagatgac atttaatgac 720 gtgccagtga atcctgaaga ggcaagttta gttgggcatg agagtaagtc actattcaga 780 ggcttaaggg attacaaccc aatagcaagt gttatatgtc atctaatgaa tgaagcggat 840 gggagaacaa gcgattgctt tggaatcgga tacggtggtc tcattataac aaatagacat 900 cttttcaaaa gaaacaatgg gacgttgaca ataagatctc gtcacggaga atttgttatt 960 aagaatacaa ctcaacttgg aatgaagccc tgtgctgata gagacatact aatcattagg 1020 atgcctaagg acataccccg gttccaacaa cgtctgaaat ttagggttcc aaagaaaaat 1080 gaaagaatct gcttggttgg atcaaatttt caggataaca caatcacgag cactatttct 1140 gaaacaagcg taacatgcca tgtgccaaac tcgcattttt ggaaacactg gatcgataca 1200 aaagatggac attgtggtct tcccttagta agcactactg atggtgcttt gttaggagtg 1260 catagcctat caaatttgac gaacactcag aacttctttg catcatttcc tgagaacttt 1320 gaagtggact atttgaaaac tcctgaagca atggattgga taaagaagtg gaattataat 1380 ccagatgaaa tttgttgggg aacgctggaa ctgaagacag gacaacccgt tgccccattc 1440 aaagtgtcca aactaatcac agacttagaa ggcatacaag tgtatgctca aacaaagtca 1500 gatagatggg ttcaagatag actacatggc aaccttaaag cagttggtcg atgtcctgca 1560 caattggtta ctaagcacgt tgtgaaggga aaatgcatgc tatttgacct atatttgcag 1620 caagatcaat ctgaaaggga gtatttcaag cctcttatgg gagcatacgg gaaaagtagg 1680 ctcaacaaag aggcgtataa taaggatttg tttaagtatg cgacacagat tcaggcagga 1740 gatgtgcaag tggatacgtt cgaattggcg gaaagatctg tcgtttccat gctcacgtca 1800 aaaggatttg aaaagtgcaa ctatatcaca gatccagagg aaattctgaa agcactgaat 1860 atgaaggctg cagtcggtgc gatgtacagt ggaaagaaga aggattactt tgaaggaatg 1920 agtgatcacg atgtagagaa ccatctcttt cacagttgca agcgtttgtt catgggacac 1980 aaaggtcttt ggaatggatc cttgaaagct gagttaagac ctatggaaaa agtggaactt 2040 aacaaaacaa gaaccttcac agcggctccc cttgacacgc tacttggtgg taaggtgtgt 2100 gtagacgatt tcaataacat gttttacaac caccatttaa aatgtccatg gacggtagga 2160 ataaccaaat tctaccaagg atgggatagg cttctcacat ctttacctga aggatgggtt 2220 tattgtgacg ctgatggctc acaatttgat agttctctct ctccatattt gatcaattca 2280 gttcttaata taagaagaga atttatggaa gattgggatg ttggtgatca aatgcttcgg 2340 aatttataca cagaaatagt gtacacacca atactgacac cagatggaac catagtgaaa 2400 aagttcaaag gtaacaacag tggacagcca tccactgtgg ttgataatac acttatggtt 2460 gtgttagcag ttcactactc actgctgaaa ctaggaatcc aagaaagcga gtttgataaa 2520 tgctgtgtct ttttcgcaaa tggtgatgat ttattgttgg caatgaggcc agatacagcc 2580 catttactgg ataagtttgg tgaatgtttt tctgaattag ggctcaatta tgacttttca 2640 tcacgaacaa ataagaagga agatctatgg tttatgtcac actgtggcgt gaaacgtgat 2700 ggaatattta ttccgaagtt ggagcctgaa aggattgttt caattcttga gtgggatcgt 2760 tcacacgagc caattcatcg actggaagca atatgtgccg cgatggtgga atcatggggt 2820 tatgatgaac ttcttcatca tattaggaaa ttctatgcat gggttttgga ccaagcccca 2880 tacaacgaac tagcacgaaa tgggaaagca ccatacatag ctgaaactgc actcaaagca 2940 ctctatacgg gtgttcaacc taatgcctct gaattgagtg cgtatacgag agtgctcaaa 3000 gaaatgtatg atgacagtat gctccaagag aatgatttgg aagtatatca tcaatctaat 3060 gagagaactg aattcaaaga tgcaggagcg aaccctccag cccctaagcc taaggacgtt 3120 cctccaccac ccacaataac tgaaatcact gatccagagg acccgaagca ggcagctttg 3180 aaagctgcac gagcaaagca acccgcggtc attccagagt catatggacg agacacgagc 3240 aaagaaaggg agtcaatagt ggggacatca tcaaagggtg tgagggataa agatgtgaat 3300 gttggcaccg ttggtacatt tgttgtgcca cgtgtcaaga tgaatgcaaa taagaaaagg 3360 caaccaatgg tcaatggaag ggccattata aatttccagc acttgtcaac atatgaacca 3420 gagcagtttg aggttgcaaa cacccggtca actcaagaac agtttcaagc atggtatgaa 3480 ggagttaaag gggattatgg tgttgacgac acagggatgg ggattttatt gaatggacta 3540 atggtttggt gcattgaaaa tggcacatcc ccaaacataa atggtgtgtg gacaatgatg 3600 gatggtgatg aacaagtaac atatccaatt aaaccattac tggaccatgc agtgcctact 3660 tttaggcaga ttatgacgca cttcagtgac gttgctgaag cttacataga gatgcgaaac 3720 cgtacaaagg catacatgcc aagatatggt ctacaacgta atttgactga tatgagtctt 3780 gcgcgatatg catttgattt ttacgagctg cattcaacta cacctgcacg tgctaaagaa 3840 gcacatttac agatgaaggc agccgcactt aagaatgcgc gaaatcggtt gtttggttta 3900 gacggaaacg tctctacgca agaagaagat acggagaggc acacgacaac tgatgttact 3960 agaaatatac ataacctctt aggaatgagg ggtgtgcaat aggacatcct ctgcactgta 4020 gcttatactt atgttatttt agtatgcctt taatttaaat tcgtgtcttt cagtcccgaa 4080 ggagatggtt gaatgcataa catggtggga ttatatctcg gttattgcat ttgagaagtc 4140 acctttctat tacgtatcat aagggactct taaaagtgag gagtacctcg taagaaaagc 4200 ctttttggtt cgtgatcgag cc 4222 //