ID FJ795777; SV 1; linear; genomic RNA; STD; VRL; 4223 BP. XX AC FJ795777; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate SOR6 polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4223 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4223 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (25-FEB-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; f206805e0e867e9f0bbd1f4b9cb2bcc3. XX FH Key Location/Qualifiers FH FT source 1..4223 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea repens" FT /isolate="SOR6" FT /mol_type="genomic RNA" FT /country="Uganda:Soroti" FT /db_xref="taxon:12844" FT CDS <1..4002 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U7L9" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E1U7L9" FT /protein_id="ACY74509.1" FT /translation="GATSCVLHQTKDSLSKHLGLKGVWNKSVITQDLLILAGVFAGGIW FT MIMAGVKDSFDQTVLHQGKEKRQMQKLKFRKARDNKLGFEVHADDGTIEHFFGSAYTKK FT GKQKGKVTGMGSKNRKFINMYGFDPTEYSFVRFVDPLTGAVIDDSPYTDILLVQERIGE FT ARLNAIKEDELSREKVAQNPGIHAYYINEITNAALKVDLTPHNPLLACERHSTIAGHPE FT YEGVLRQTGPPIKMTLNDVPVNPEEASLVGHESKSLFRGLRDYNPIASVICHLMNEADG FT RTSDCFGIGYGGLIITNRHLFKRNNGTLTIKSRHGEFVIKNTTQLGMKPCADRDILIIR FT MPKDIPPFPPPIKFRVPKENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWID FT TKDGHCGLPLVSTTDGALLGVHSLSNLTNTQNFFASFPENFEVDYLKTPEAMDWIKKWS FT YNPDEICWGTLELKTGQPVAPFKVSKLITDLEGIQVYAQARSDRWVRDRLYGNLKAVGQ FT CPAQLVTKHVVKGKCMLFDLYLQQDQSEREYFKPLMGAYGKSRLNKEAYNKDLFKYATQ FT IQAGDVQVDTFELAERSVISMLTLKGFEKCNYITDPEEILKALNMKAAVGAMYSGKKKD FT YFEGMSDQDVEDHLFHSCKRLFMGHKGLWNGSLKAELRPLEKVELNKTRTFTAAPLDTL FT LGGKVCVDDFNNMFYNHHLKCPWTVGITKFYQGWDRLLTSLPEGWVYCDADGSQFDSSL FT SPYLINSVLNIRREFMEDWDVGDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPST FT VVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANGDDLLLAMRPDIAHLLDKFGECFS FT ELGLNYDFSSRTNKKEDLWFMSHCGVKRDGIFIPKLEPERIVSILEWDRSHEPIHRLEA FT ICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARNGKAPYIAETALKALYTGVQPNA FT SELSAYTRVLKEMYDDSMLQENDLEVYHQSDERTEFKDAGADPPVPKPKNVPPPPTITE FT ITDPEDPKQAALKAARAKQPAVIPESYGRDTSKERESIVGASSKGVRDKDVNVGTVGTF FT VVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDY FT GVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIM FT THFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQ FT MKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ" FT mat_peptide <1..27 FT /product="cytoplasmic inclusion protein; CI" FT mat_peptide 28..186 FT /product="6K2 protein" FT mat_peptide 187..762 FT /product="VPg protein" FT mat_peptide 763..1491 FT /product="NIa-Pro protein" FT mat_peptide 1492..3054 FT /product="nuclear inclusion body; NIb" FT mat_peptide 3055..3999 FT /product="coat protein; CP" XX SQ Sequence 4223 BP; 1357 A; 765 C; 989 G; 1112 T; 0 other; ggagccacct cttgtgtgct ccatcaaact aaggattctc tctcaaaaca tcttggtctg 60 aagggagtat ggaacaagtc agttattaca caggacctac ttattctcgc aggagtattt 120 gctggtggaa tctggatgat aatggcggga gtgaaggatt catttgatca aactgtgcta 180 catcaaggaa aagaaaagag gcaaatgcaa aagctgaaat tcagaaaggc acgagataac 240 aaacttggat tcgaagtgca tgctgatgat ggaacaatcg aacacttctt tggtagtgca 300 tacaccaaga aagggaaaca aaaaggaaag gttactggaa tgggatcgaa gaatagaaaa 360 tttataaaca tgtacggatt tgatcccact gaatattcct ttgtccgatt tgttgaccca 420 ttgactggag ctgtgataga tgattcccca tacacagata ttctccttgt tcaggagagg 480 attggtgagg ctcgtttgaa tgccatcaaa gaagatgaac tttcaagaga aaaagttgca 540 caaaatccag gaattcatgc atactatatc aatgaaatca caaatgctgc actcaaagtt 600 gatcttacac cgcacaatcc actacttgca tgtgaaagac atagcaccat tgctggtcat 660 cctgaatatg aaggagtttt gagacaaacc ggacccccaa ttaagatgac acttaatgac 720 gtgccagtga atcctgaaga ggcaagtttg gttgggcatg agagtaaatc actattcaga 780 ggcttaaggg attacaatcc aatagcaagt gttatatgtc acctaatgaa tgaagcggat 840 gggagaacaa gcgactgctt tggaatcgga tacggtggtc tcattataac aaataggcat 900 cttttcaaaa ggaataatgg cacattaaca attaaatctc gacatggaga atttgttatc 960 aagaacacaa cccaacttgg gatgaaacct tgtgctgaca gagacatact catcattagg 1020 atgcctaaag atatacctcc gtttccacca ccaatcaagt ttagggttcc caaggagaac 1080 gaaagaattt gcttggttgg gtcaaatttt caagacaaat caattacaag cacgatctct 1140 gaaactagtg taacgtgtca tgtgccaaac tcgcattttt ggaagcactg gatcgataca 1200 aaagatggac attgtggtct tcccttagta agcactactg atggtgctct gttgggagtg 1260 catagtctat caaatttgac gaacactcag aacttctttg catcatttcc tgagaacttt 1320 gaagtggatt atttgaaaac tcctgaggca atggattgga taaagaaatg gagttataat 1380 ccagatgaaa tttgttgggg aacgctggaa ctgaagacag ggcaacccgt tgccccattc 1440 aaagtgtcca aactaatcac ggacttagaa ggcatacaag tgtatgctca agcaaggtcg 1500 gatagatggg ttcgagatag gctatatggc aatctcaaag cagttggtca gtgtcctgca 1560 caactggtta ctaagcacgt tgtgaaggga aaatgcatgc tatttgacct atatttgcag 1620 caagatcaat ctgaaaggga gtatttcaag cctcttatgg gagcatacgg gaaaagtaga 1680 ctcaacaaag aggcgtataa taaggatttg ttcaaatatg cgacacaaat tcaggcagga 1740 gatgtgcaag tggatacatt tgaattggcg gaaagatctg tcatttctat gctcacgtta 1800 aaaggatttg aaaagtgcaa ctacatcaca gatccagagg aaattctgaa agcactgaac 1860 atgaaggctg cagtcggcgc gatgtacagt ggaaagaaga aggattactt tgaaggaatg 1920 agcgatcagg atgtggaaga ccatcttttt catagttgca agcgtttgtt catgggacac 1980 aaaggtcttt ggaatggatc tttgaaagct gagttgagac ctttggaaaa agtggaactt 2040 aacaaaacaa gaaccttcac agcggctcct cttgacacgc tgcttggtgg taaggtgtgt 2100 gtagacgatt tcaataacat gttttacaac caccatttaa aatgtccatg gacggtagga 2160 ataaccaaat tttaccaagg atgggatagg cttctcacat ctctacctga aggatgggtt 2220 tattgtgacg ctgatggctc acaatttgat agttctctct ctccatattt gattaattca 2280 gttcttaata taagaagaga atttatggaa gattgggatg ttggtgatca aatgcttcgg 2340 aatttataca cagaaatagt gtacacacca atactgacac cagacggaac catagtgaag 2400 aagttcaaag gtaataatag tggtcagcca tcgactgtgg ttgataatac acttatggtt 2460 gtgttagcag ttcactacac attgctgaaa ctaggaatcc aagaaagcga gtttgataaa 2520 tgctgtgtct ttttcgcaaa tggtgatgat ttattgttgg caatgaggcc agatatagcc 2580 catttactgg ataagtttgg tgaatgtttt tctgaattag gactcaatta tgacttttca 2640 tcacgaacaa ataagaagga agatctatgg tttatgtcac actgtggcgt gaaacgtgat 2700 ggaatattta ttccaaagtt ggagcctgaa aggattgttt caattcttga atgggatcgt 2760 tcacacgagc caattcatcg actggaagca atatgtgccg cgatggtgga atcatggggt 2820 tatgatgaac ttcttcatca tattaggaaa ttctatgcat gggttttgga ccaagcccca 2880 tacaacgaac tagcacgaaa tgggaaggca ccatacatag ctgaaactgc actcaaagca 2940 ctctatactg gtgttcaacc taatgcctct gaattgagtg cgtatacgag agtgctcaaa 3000 gaaatgtatg atgacagtat gctccaagag aatgatttgg aagtatatca ccaatctgat 3060 gagagaactg aatttaaaga tgcaggagcg gaccctccag tccctaagcc taagaacgtt 3120 cctccaccac ccacaataac tgaaatcact gatccagagg acccgaagca ggcagctttg 3180 aaagctgcac gagcaaagca acccgcggtc attccagagt catatggacg agacacgagc 3240 aaagaaaggg agtcaatagt gggggcatca tcaaaaggtg tgagggataa ggatgtgaat 3300 gttggcaccg ttggtacatt tgttgtacca cgtgtcaaga tgaatgcaaa taagaaaagg 3360 caaccaatgg tcaatggaag ggccattata aatttccagc acttgtcaac atatgaacca 3420 gagcagtttg aggttgcaaa cacccggtca acccaagaac agttccaagc atggtatgaa 3480 ggagttaaag gggattatgg cgttgacgac acagggatgg ggattttatt gaatggacta 3540 atggtttggt gcattgaaaa tggcacatcc ccaaacataa atggtgtgtg gacaatgatg 3600 gatggtgatg aacaagtaac atatccaatt aaaccattac tggaccatgc agtgcctact 3660 tttaggcaga ttatgacgca cttcagtgac gttgctgaag cttacataga gatgcgaaac 3720 cgtacaaagg catacatgcc aaggtatggt ctacaacgta atttgactga tatgagtctt 3780 gcgcgatatg catttgattt ttacgagctg cattcaacta cacctgcacg tgctaaagaa 3840 gcacatttac agatgaaggc agctgcactc aagaatgcgc gaaatcggtt gtttggttta 3900 gacggaaacg tctctacgca agaagaagat acggagaggc acacgacaac tgatgttact 3960 agaaatatac ataacctctt aggaatgagg ggtgtgcaat aggacatcct ctgcactgta 4020 gcttatactt atgttatctt tagtatgcct ttaatttaaa ttcgtgtctt tcagtcccga 4080 aggagatggt tggatgcata acatggtggg gttatatctc ggttattgca tttgagaagt 4140 cacctttcta ttacgtatca taagggactc ttaaaagtga ggagtacctc gtaagaaaag 4200 cctttttggt tcgtgatcga gcc 4223 //