ID FJ795776; SV 1; linear; genomic RNA; STD; VRL; 4223 BP. XX AC FJ795776; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate ARU59a polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4223 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4223 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (25-FEB-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; a8625597806f02044b1c309f6a0cdab9. XX FH Key Location/Qualifiers FH FT source 1..4223 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea stenobasis" FT /isolate="ARU59a" FT /mol_type="genomic RNA" FT /country="Uganda:Arua" FT /db_xref="taxon:12844" FT CDS <1..4002 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U7L8" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E1U7L8" FT /protein_id="ACY74508.1" FT /translation="GATSCVLHQTKDSLSKHLGLKGVWNKSVITQDLLILAGVFAGGIW FT MIMAGVKDSFDQTVLHQGKEKRQMQKLKFRKARDNKLGFEVHADDGTIEHFFGSAYTKK FT GKQKGKVTGMGSKNRKFINMYGFDPTEYSFVRFVDPLTGAVIDDSPYTDILLVQERIGE FT ARLNAIKEDELSREKVAQNPGIHAYYINEITNAALKVDLTPHNPLLACERHSTIAGHPE FT YEGVLRQTGPPIKMTLNDVPVNPEEASLVGHESKSLFRGLRDYNPIASVICHLVNEADG FT RTSDCFGIGYGGLIVTNRHLFKRNNGTLTIRSRHGEFVIKNTTQLGMKPCADRDILIIR FT MPKDIPPFPQRLKFRVPKENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWID FT TKDGHCGLPLVSTTDGALLGVHSLSNLTNTQNFFASFPENFEVDYLKTPEAMDWIKKWS FT YNPDEICWGTLELKTGQPVAPFKVSKLITDLEGIQVYAQTRSDRWVQDRLYGNLKAVGQ FT CPAQLVTKHVVKGKCMLFDLYLQQDQSEREYFKPLMGAYGKSRLNKEAYNKDLFKYATQ FT IQAGDVQVDTFELAERSVISMLTSKGFEKCNYITDPEEILKALNMKAAVGAMYSGKKKD FT YFEGMSDYDVEDHLFHSCKRLFMGHKGLWNGSLKAELRPMEKVELNKTRTFTAAPLDTL FT LGGKVCVDDFNNMFYNHHLKCPWTVGITKFYQGWDRLLTSLPEGWVYCDADGSQFDSSL FT SPYLINSVLNIRREFMEDWDIGDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPST FT VVDNTLMVVLTIHYTLLKLGIQESEFDKCCVFFANGDDLLLAMRPDTAHLLDKFGECFS FT ELGLNYDFSSRTNKKEDLWFMSHCGVKRDGIFIPKLEPERIVSILEWDRSHEPIHRLEA FT ICAAMVESWGYDELLHRIRKFYAWVLDQAPYNELARNGKAPYIAETALKALYTGVQPNA FT SELSAYTRVLKEMYDDSMLQENDLEVYHQSNEKTEFKDAGADPPAPKPKNNPPPPTITE FT ITDPEDPKQEALKAARAKQPAVIPESYGRDTSKERESIVGTSSKGVRDKDVNVGTVGTF FT VVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDY FT GVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIM FT THFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQ FT MKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ" FT mat_peptide <1..27 FT /product="cytoplasmic inclusion protein; CI" FT mat_peptide 28..186 FT /product="6K2 protein" FT mat_peptide 187..762 FT /product="VPg protein" FT mat_peptide 763..1491 FT /product="NIa-Pro protein" FT mat_peptide 1492..3054 FT /product="nuclear inclusion body; NIb" FT mat_peptide 3055..3999 FT /product="coat protein; CP" XX SQ Sequence 4223 BP; 1368 A; 760 C; 977 G; 1118 T; 0 other; ggagccacct cttgtgtgct ccatcaaact aaggattctc tctcaaaaca tcttggtctg 60 aagggagtat ggaacaagtc agttattaca caggatctac tcattctcgc aggagttttt 120 gctggtggaa tctggatgat aatggcggga gtgaaggatt catttgatca aactgtgcta 180 catcaaggaa aagaaaagag gcaaatgcaa aagctgaaat tcagaaaggc acgagataat 240 aaacttggat tcgaagtgca cgctgatgat ggaactatcg aacacttctt tggtagtgca 300 tacaccaaga aagggaaaca aaaaggaaag gttactggaa tgggatcgaa gaataggaaa 360 tttataaaca tgtacggatt tgatcctact gaatattcct ttgtccgatt tgttgaccca 420 ttgactggag ctgtgataga tgattcccca tacacagata ttctccttgt tcaggagagg 480 attggtgagg ctcgtttgaa tgccatcaaa gaagatgaac tttcaagaga aaaagttgca 540 caaaatccag gaattcatgc atattatatc aatgaaatca caaatgctgc acttaaagtt 600 gatcttacac cgcacaatcc attacttgca tgtgaaagac atagcaccat tgccggtcat 660 cctgaatatg aaggagtttt gagacaaacc ggacccccaa ttaagatgac acttaatgac 720 gtgccagtga atcctgaaga ggcaagtttg gttgggcacg aaagtaaatc attatttaga 780 ggcttaaggg attataatcc aatagctagc gtcatatgtc atctcgtgaa tgaggcagat 840 ggaagaacaa gtgactgttt cgggattgga tatggtggtc tcattgtcac caacaggcat 900 ttgtttaaac gaaacaatgg gacgttgaca ataagatccc gtcacggaga gtttgttatt 960 aagaacacaa ctcaacttgg aatgaagccc tgtgctgata gagacatact aatcattagg 1020 atgcctaagg atataccccc attcccacaa cgcctgaaat ttagagttcc aaaagaaaat 1080 gaaagaattt gcttggttgg atcaaatttt caggataaat caatcacgag cacaatttct 1140 gagaccagcg taacgtgtca tgtgccaaac tcacattttt ggaagcactg gattgataca 1200 aaagatggac attgtggtct tcccttagta agcaccactg atggtgcttt gttgggagtg 1260 catagtctat caaatctgac gaacactcag aacttctttg catcatttcc tgagaacttt 1320 gaagtggact atttgaaaac tcctgaggca atggattgga taaagaaatg gagttataat 1380 ccagatgaaa tttgttgggg aacgctggaa ctgaagacag gacaacccgt tgctccattt 1440 aaagtgtcca aactaatcac ggacttagaa ggcatacaag tgtatgctca aacaaggtcg 1500 gatagatggg ttcaagatag actatatggc aatcttaaag cagttggtca atgtcctgca 1560 caattggtta ctaagcacgt tgtgaaggga aaatgcatgc tatttgacct atatttgcag 1620 caagaccaat ctgaaaggga gtatttcaag cctcttatgg gagcatacgg gaaaagtagg 1680 ctcaacaaag aggcgtataa taaggatttg ttcaaatatg cgacacaaat tcaggcagga 1740 gatgtgcaag tggatacgtt cgaattggcg gaaagatctg tcatttctat gctcacgtca 1800 aaaggatttg aaaagtgcaa ttacatcaca gatccagagg aaattctgaa agcactgaac 1860 atgaaggctg cagtcggtgc aatgtacagt ggaaagaaga aggattactt tgaaggaatg 1920 agtgattacg atgtggaaga ccatcttttt cacagttgca agcgtttgtt catgggacac 1980 aaaggtcttt ggaatggatc cttgaaagct gagttgaggc ctatggaaaa agtggaactt 2040 aacaaaacaa gaacctttac agcggctcct cttgacacgc tgcttggtgg taaggtgtgt 2100 gtagatgatt tcaataacat gttttacaac caccatttaa aatgtccatg gacggtagga 2160 ataaccaaat tctaccaggg atgggataga cttctcacat ctctacccga aggatgggtt 2220 tattgtgacg ctgatggctc acaatttgat agttctctct ctccatattt gatcaattca 2280 gttcttaata taagaagaga atttatggaa gattgggata ttggtgatca aatgcttcgg 2340 aatttataca cagaaatagt atacacacca atactgacac cggatggaac aatagtgaag 2400 aagttcaaag gtaacaacag tggacagcca tctactgtgg ttgataatac acttatggtt 2460 gtattgacaa ttcactacac attgctgaaa ctaggaatcc aagaaagtga atttgataaa 2520 tgctgtgtct ttttcgcaaa cggtgatgat ttgttgttgg caatgaggcc agatacagcc 2580 catttactgg ataagtttgg tgaatgtttt tctgaattag gactcaatta tgatttttca 2640 tcccgaacaa ataagaagga agatctatgg tttatgtcac actgtggcgt aaaacgtgat 2700 ggaatattta ttccgaaatt ggagcctgaa aggattgttt caattcttga atgggatcgt 2760 tcacacgagc caattcatcg actagaagca atatgtgccg caatggtgga atcatggggt 2820 tatgatgaac ttcttcatcg tattagaaaa ttctatgcat gggttttgga ccaagcccca 2880 tacaacgaac tagcacgaaa tgggaaagca ccatacatag ctgaaactgc actcaaagca 2940 ctctatactg gtgttcaacc taatgcctct gaattgagtg cgtatacgcg agtgctcaaa 3000 gaaatgtatg atgacagtat gctccaagag aatgatttgg aagtatatca tcaatctaat 3060 gagaaaactg aatttaaaga tgcaggagcg gaccctccag cccctaagcc caagaacaat 3120 cctccaccac ccacaataac tgaaatcact gatccagagg acccgaagca ggaagctttg 3180 aaagctgcac gagcgaagca acccgcggtc attccagagt catatggacg ggacacgagc 3240 aaagaaaggg agtcaatagt agggacatca tcaaagggtg tgagggataa agatgtgaat 3300 gttggcaccg ttggtacatt tgttgtacca cgtgtcaaga tgaatgcaaa taagaaaagg 3360 caaccaatgg tcaatggaag ggccattata aattttcagc acttgtcaac atatgaacca 3420 gagcagtttg aggttgcaaa cacccgatca actcaagaac agttccaagc gtggtatgaa 3480 ggagttaaag gggattatgg tgttgacgac acagggatgg ggatcttatt gaatggacta 3540 atggtttggt gcattgaaaa tggcacatcc ccaaatataa atggtgtgtg gacaatgatg 3600 gatggtgatg aacaagtaac atatccaatt aaaccattac tggaccatgc agtgcctact 3660 tttaggcaga ttatgacgca cttcagtgac gttgctgaag cttacataga gatgcgaaac 3720 cgtacaaagg catacatgcc aaggtatggt ctacaacgta atttgactga tatgagtctt 3780 gcgcgatatg catttgattt ttacgagctg cattcaacta cacctgcacg tgctaaagaa 3840 gcacatttac agatgaaggc agccgcactt aagaatgcgc gaaatcggtt gtttggtttg 3900 gacggaaacg tctccacgca agaagaagat acggagaggc acacgacaac tgatgttact 3960 agaaatatac ataacctctt aggaatgagg ggtgtgcaat aggacatcct ctgcactgta 4020 gcttatactt atgttatctt tagtatgcct ttaatttaaa ttcgtgtctt tcagtcccga 4080 aggagatggt tgaatgcata acatggtggg attatatctc ggttattgca tttgagaagt 4140 cacctttcta ttacgtatca taagggactc ttaaaagtga agagtacctc gtaagaaaag 4200 cctttttggt tcgtgatcga gcc 4223 //