ID FJ795773; SV 1; linear; genomic RNA; STD; VRL; 4223 BP. XX AC FJ795773; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate RKI77a polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4223 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4223 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (25-FEB-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; f23b9cb29a0c6547b8e2a25577f61cf4. XX FH Key Location/Qualifiers FH FT source 1..4223 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea cairica" FT /isolate="RKI77a" FT /mol_type="genomic RNA" FT /country="Uganda:Rakai" FT /db_xref="taxon:12844" FT CDS <1..4002 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U7L5" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E1U7L5" FT /protein_id="ACY74505.1" FT /translation="GATSCVLHQTKDSLSKHLGLKGVWNRSVITQDLLILAGVFAGGIW FT MIMAGVKDSFDQTVLHQGKEKRQMQKLKFRKARDNKLGFEVHADDGTIEHFFGSAYTKK FT GKQKGKVTGMGSKNRKFINMYGFDPTEYSFVRFVDPLTGAVIDDSPYTDILLVQERIGE FT ARLNAIKEDELSREKVAQNPGIHAYYINEITNAALKVDLTPHNPLLACERHSTIAGHPE FT YEGVLRQTGPPIKMTLNDVPVNPEETSLVGHESKSLFRGLRDYNPIASVICHLVNEADG FT RTSDCFGIGYGGLIVTNRHLFKRNNGTLTIRSRHGEFVIKNTTQLGMKPCADRDILIIR FT MPKDIPPFPQRLKFRVPKENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWID FT TKDGHCGLPLVSTTDGALLGVHSLSNLTNTQNFFASFPENFEVDYLKTPEAMDWIKKWS FT YNPDEICWGTLELKTGQPVAPFKVSKLITDLEGIQVYAQTRSDRWVQDRLYGNLKAVGQ FT CPAQLVTKHVVKGKCMLFDLYLQQNQSEREYFKPLMGAYGKSRLNKEAYNKDLFKYATQ FT IQAGDVQVDTFELAERSVISMLTSKGFEKCNYITDPEEILKALNMKAAVGAMYSGKKKD FT YFEGMSDHDVEDHLFHSCKRLFMGHKGLWNGSLKAELRPMEKVELNKTRTFTAAPLDTL FT LGGKVCVDDFNNMFYNHHLKCPWTVGITKFYQGWDRLLTSLPEGWVYCDADGSQFDSSL FT SPYLINSVLNIRREFMEDWDVGDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPST FT VVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANGDDLLLAMRPDTAHLLDKFGECFS FT ELGLNYDFSSRTNKKEDLWFMSHCGVKRDGIFIPKLEPERIVSILEWDRSHEPIHRLEA FT ICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARNGKAPYIAETALKALYTGVQPNA FT SELSAYTRVLKEMYDDSMLQENDLEVYHQSNERTEFKDAGANPPAPKPKDVPPPPTITE FT ITDPEDPKQAALKAARAKQPAVIPESYGRDTSKERESIVGTSSKGVRDKDVNVGTVGTF FT VVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDY FT GVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIM FT THFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQ FT MKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ" FT mat_peptide <1..27 FT /product="cytoplasmic inclusion protein; CI" FT mat_peptide 28..186 FT /product="6K2 protein" FT mat_peptide 187..762 FT /product="VPg protein" FT mat_peptide 763..1491 FT /product="NIa-Pro protein" FT mat_peptide 1492..3054 FT /product="nuclear inclusion body; NIb" FT mat_peptide 3055..3999 FT /product="coat protein; CP" XX SQ Sequence 4223 BP; 1362 A; 762 C; 983 G; 1116 T; 0 other; ggagccacct cttgtgtgct ccatcaaact aaggattctc tctcaaaaca tcttggtctg 60 aagggagtat ggaacaggtc agttattaca caggacctac ttattctcgc aggagttttt 120 gctggtggaa tctggatgat aatggcagga gtgaaggatt catttgatca aactgtgcta 180 catcaaggaa aagaaaagag gcaaatgcaa aaactgaaat tcagaaaggc acgagataac 240 aaacttggat tcgaagtgca tgctgatgat ggaactatcg aacacttctt tggtagtgca 300 tacaccaaga aagggaaaca aaaaggaaag gttactggaa tgggatcgaa gaacaggaaa 360 tttataaaca tgtacggatt tgatcccact gaatattcct ttgtccgatt tgttgaccca 420 ttgactgggg ctgtgataga tgattcccca tacacagata ttctccttgt tcaggagagg 480 attggtgaag ctcgtttgaa tgccatcaaa gaagatgaac tttcaagaga aaaagttgca 540 caaaatccag gaattcatgc atactatatc aatgaaatca caaatgctgc acttaaagtt 600 gatcttacac cgcacaatcc attacttgca tgtgaaagac atagcactat tgccggtcat 660 cctgaatatg aaggagtttt gagacaaacc ggacccccaa ttaagatgac acttaatgac 720 gtgccagtga atcctgaaga gacaagtttg gttgggcacg aaagtaaatc attatttaga 780 ggcttaaggg attataatcc aatagctagc gtcatatgtc atctcgtgaa tgaggcagat 840 ggaagaacaa gtgactgttt cggaattgga tatggcggcc tcattgtcac caataggcat 900 ctgtttaaac gaaacaatgg gacgttgaca ataagatctc gtcacggaga gtttgttatt 960 aagaacacaa ctcaacttgg aatgaagccc tgtgccgata gagacatact aatcattagg 1020 atgcctaagg atataccacc gttcccacaa cgcctgaaat ttagggttcc gaaagaaaat 1080 gaaagaatct gcttggttgg atcaaatttt caggataaat caattacgag cacaatttct 1140 gaaactagcg taacgtgcca tgtgccaaac tcacattttt ggaagcactg gattgataca 1200 aaagatggac attgtggtct tcccttagta agcactactg atggtgcttt gttgggagtg 1260 catagtctat caaatttgac gaacactcag aacttctttg catcatttcc tgagaatttt 1320 gaagtggact atttgaaaac tcctgaggca atggattgga taaagaaatg gagttataat 1380 ccagatgaaa tttgttgggg aacgctggaa ctgaagacag gacaacccgt tgctccattc 1440 aaagtgtcca aactaatcac ggacttagaa ggcatacaag tgtatgctca aacaaggtcg 1500 gatagatggg ttcaagatag actatatggc aatcttaaag cagttggtca atgtcctgca 1560 caattggtta ctaagcacgt tgtgaaggga aaatgcatgc tatttgacct atatttgcag 1620 caaaatcaat ctgaaaggga gtatttcaag cctcttatgg gagcatacgg gaaaagtagg 1680 ctcaacaaag aggcgtacaa taaggatttg ttcaaatatg cgacacaaat tcaggcagga 1740 gatgtacaag tggatacatt cgaattggcg gaaagatctg tcatttctat gctcacatca 1800 aaaggatttg aaaagtgcaa ctacatcaca gatccagagg aaattctgaa agcactgaac 1860 atgaaggctg cagtcggtgc gatgtacagt ggaaagaaga aggattactt tgaaggaatg 1920 agcgatcacg atgtggaaga ccaccttttt catagttgca agcgtttgtt catggggcac 1980 aaaggtcttt ggaatggatc cttgaaagct gagttgagac ctatggaaaa agtggaactt 2040 aacaaaacaa gaaccttcac agcggctcct cttgacacgc tgcttggtgg taaggtgtgt 2100 gtagacgatt tcaataacat gttttacaac caccatttaa aatgtccatg gacggtagga 2160 ataaccaaat tctaccaagg atgggatagg cttctcacat ctctacctga aggatgggtt 2220 tattgtgacg ctgatggctc acaatttgat agttctcttt ctccatattt gatcaattca 2280 gttcttaata taagaagaga atttatggag gattgggatg ttggtgatca aatgcttcgg 2340 aatttataca cagaaatagt gtacacacca atactgacac cagacggaac catagtgaag 2400 aagttcaaag gtaacaacag tggacagcca tctactgtgg ttgataatac acttatggtt 2460 gtgttagcag ttcactacac attgctgaaa ctaggaatcc aagaaagcga gtttgataaa 2520 tgctgtgtct ttttcgcaaa tggtgatgat ttattgttgg caatgaggcc agatacagcc 2580 catttactgg ataagtttgg tgaatgtttt tctgaattag gactcaatta tgacttttca 2640 tcacgaacaa ataagaagga agatctatgg tttatgtcac actgtggcgt gaaacgtgat 2700 ggaatattta ttccgaagtt ggagcctgaa aggattgttt caattcttga atgggaccgt 2760 tcacacgagc caattcatcg actggaagca atatgtgccg cgatggtgga atcatggggt 2820 tatgatgaac ttcttcatca tattaggaaa ttctatgcat gggttttgga tcaagcccca 2880 tacaacgaac tagcacgaaa tgggaaagca ccatacatag ctgaaactgc actcaaagca 2940 ctctatactg gtgttcaacc taatgcctct gaattgagtg cgtatacgag agtgctcaaa 3000 gaaatgtatg atgacagtat gctccaagag aatgatttgg aagtatatca tcaatctaat 3060 gagagaactg aatttaaaga tgcaggagcg aaccctccag cccctaagcc taaggacgtt 3120 cctccaccac ccacaataac tgaaatcact gatccagagg acccgaagca ggcagctttg 3180 aaagctgcac gagcaaagca acccgcggtc attccagagt catatgggcg agacacgagc 3240 aaagaaaggg agtcaatagt ggggacatca tcaaagggtg tgagggataa agatgtgaat 3300 gttggcaccg ttggtacatt tgttgtgcca cgtgtcaaga tgaatgcaaa taagaaaaga 3360 caaccaatgg tcaatggaag ggccattata aatttccagc acttgtcaac atatgaacca 3420 gagcagtttg aggttgcaaa cacccggtca actcaagaac agtttcaagc atggtatgaa 3480 ggagttaaag gggattatgg tgttgacgat acagggatgg ggattttatt gaatggacta 3540 atggtttggt gcattgaaaa tggcacatcc ccaaatataa atggtgtgtg gacaatgatg 3600 gatggtgatg aacaagtaac atatccaatt aaaccattac tggaccatgc agtgcctact 3660 tttaggcaga ttatgacgca cttcagtgac gttgctgaag cttacataga gatgcgaaac 3720 cgtacaaagg catacatgcc aaggtatggt ctacaacgta atttgactga tatgagtctt 3780 gcgcgatatg catttgattt ttacgagctg cattcaacta cacctgcacg tgctaaagaa 3840 gcacatttac agatgaaggc agccgcactt aagaatgcgc gaaatcggtt gtttggttta 3900 gacggaaacg tctctacgca agaagaagat acggagaggc acacgacaac tgatgttact 3960 agaaatatac ataacctctt aggaatgagg ggtgtgcaat aggacatcct ctgcactgta 4020 gcttatactt atgttatttt tagtatgcct ttaatttaaa ttcgtgtctt tcagtcccga 4080 acgagatggt tgagagcata acatggtggg attatatctc ggttattgca tttgagaagt 4140 cacctttcta ttacgtatca taagggactc ttaaaagtga ggagtacctc gtaagaaaag 4200 cctttttggt tcgtgatcga gcc 4223 //