ID FJ795769; SV 1; linear; genomic RNA; STD; VRL; 4223 BP. XX AC FJ795769; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate HOM32 polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4223 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4223 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (25-FEB-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; 249af7628ac1b64f22422ec90df0cbf7. XX FH Key Location/Qualifiers FH FT source 1..4223 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea cairica" FT /isolate="HOM32" FT /mol_type="genomic RNA" FT /country="Uganda:Hoima" FT /db_xref="taxon:12844" FT CDS <1..4002 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U7L1" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E1U7L1" FT /protein_id="ACY74501.1" FT /translation="GATSCVLHQTKDSLSKHLGLKGVWNKSVITQDLLILAGVFAGGIW FT MIMAGVKDSFDQTVLHQGKEKRQMQKLKFRKARDNKLGFEVHADDGTIEHFFGSAYTKK FT GKQKGKVTGMGSKNRKFINMYGFDPTEYSFVRFVDPLTGAVIDDSPYTDILLVQERIGE FT ARLNAIKEDELSREKVAQNPGIHAYYINEITNAALKVDLTPHNPLLACERHSTIAGHPE FT YEGVLRQTGPPIKMTLNDVPVNPEEASLVGHESKSLFRGLRDYNPIASVICHLVNEADG FT RTSDCFGIGYGGLIVTNRHLFKRNNGTLTIRSRHGEFVIKNTTQLGMKPCADRDILIIR FT MPKDIPPFPQRLKFRVPKENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWID FT TKDGHCGLPLVSTTDGALLGVHSLSNLTNTQNFFASFPENFEVDYLKTPEAMDWIKKWS FT YNPDEICWGTLELKTGQPVAPSKVSKLITDLEGIQVYAQTRSDRWVQDRLYGNLKAVGQ FT CPAQLVTKHVVKGKCMLFDLYLQQDQSEREYFKPLMGAYGKSRLNKEAYNKDLFKYATQ FT IQAGDVQVDTFELAERSVISMLTSKGFEKCNYITDPEEILKALNMKAAVGAMYSGKKKD FT YFEGMSDHDVEDHLFHSCKRLFMGHKGLWNGSLKAELRLMEKVELNKTRTFTAAPLDTL FT LGGKVCVDDFNNMFYNHHLKCPWTVGITKFYQGWDRLLTSLPEGWVYCDADGSQFDSSL FT SPYLINSVLNIRREFMEDWDVGDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPST FT VVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANGDDLLLAMRPDTAHLLDKFGECFS FT ELGLNYDFSSRTNKKEDLWFMSHCGVKRDGIFIPKLEPERIVSILEWDRSHEPIHRLEA FT ICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARNGKAPYIAETALKALYTGVQPNA FT SELSAYTRVLKEMYDDSMLQENDLEVYHQSNERTEFKDAGANPPAPKPKDIPPPPTITE FT ITDPEDPKQAALKAARAKQPAVIPESYGRDTSKERESIVGTSSKGLKDKDVNVGTVGTF FT VVPRVKMNANKKRQPMINGRAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDY FT GVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIM FT THFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQ FT MKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ" FT mat_peptide <1..27 FT /product="cytoplasmic inclusion protein; CI" FT mat_peptide 28..186 FT /product="6K2 protein" FT mat_peptide 187..762 FT /product="VPg protein" FT mat_peptide 763..1491 FT /product="NIa-Pro protein" FT mat_peptide 1492..3054 FT /product="nuclear inclusion body; NIb" FT mat_peptide 3055..3999 FT /product="coat protein; CP" XX SQ Sequence 4223 BP; 1356 A; 766 C; 985 G; 1116 T; 0 other; ggagccacct cttgtgtgct ccatcaaact aaggattctc tctcaaaaca tcttggtctg 60 aagggagtat ggaacaagtc agttattaca caggatctac taattcttgc aggagttttt 120 gctggtggaa tctggatgat aatggcggga gtgaaggatt catttgatca aactgtgcta 180 catcaaggaa aagaaaagag gcaaatgcaa aagctgaaat tcagaaaggc acgagataac 240 aaacttggat tcgaagtgca tgctgatgat ggaaccattg aacacttctt tggtagtgca 300 tacaccaaga aagggaaaca aaaaggaaag gttactggaa tgggatcgaa gaatagaaaa 360 tttataaaca tgtacggatt tgatcccact gaatattcct ttgtccgatt tgttgaccca 420 ttgactggag ctgtgataga tgattccccg tacacagata ttctccttgt tcaggagagg 480 attggtgagg ctcgtttgaa tgccatcaaa gaagatgaac tttcaagaga aaaagttgca 540 caaaatccag gaattcatgc atactatatc aatgaaatca caaatgccgc acttaaagtt 600 gatcttacac cgcacaatcc attacttgca tgtgaaagac atagcactat tgccggtcat 660 cctgaatatg aaggagtttt gagacaaacc ggacccccaa ttaagatgac acttaatgac 720 gtgccagtga atcctgaaga ggcaagtttg gttgggcacg aaagtaaatc attatttaga 780 ggcttaaggg attataatcc aatagctagc gtcatatgtc atctcgtgaa tgaggcagat 840 ggaagaacaa gtgactgttt cgggattgga tatggcggcc tcattgtcac taataggcat 900 ctgtttaaac gaaacaatgg gacgttgaca ataagatctc gtcacggaga gtttgttatt 960 aagaacacaa ctcaacttgg aatgaagccc tgtgctgaca gagacatatt aatcattagg 1020 atgcccaagg atataccccc gttcccacaa cgcctgaaat ttagggttcc aaaagaaaat 1080 gaaagaatct gcttggtggg atcaaatttt caggataagt caatcacgag cacaatttct 1140 gaaaccagcg taacgtgcca tgtgccaaac tcacattttt ggaagcactg gattgataca 1200 aaagatgggc attgtggtct tcccttagta agcactactg atggtgcttt gttgggagtg 1260 catagtctat caaatttgac gaacactcag aacttctttg catcatttcc tgagaacttt 1320 gaagtggact atttgaaaac tcctgaggca atggattgga taaagaaatg gagttataat 1380 ccagatgaaa tttgttgggg aacgctggaa ctgaagacag gacaacccgt tgctccatcc 1440 aaagtgtcta aactaatcac ggacttagaa ggcatacaag tgtacgctca aacaaggtcg 1500 gatagatggg ttcaagatag actatatggc aatcttaaag cagttggtca atgtcctgca 1560 caattggtta ctaagcacgt tgtgaaggga aaatgcatgc tatttgacct atatttgcag 1620 caagatcaat ctgaaaggga gtatttcaag cctcttatgg gagcatatgg gaaaagtagg 1680 ctcaacaaag aggcgtataa taaggatttg ttcaaatatg cgacacaaat tcaggcagga 1740 gatgtgcaag tggatacatt cgaattggcg gaaagatctg tcatttctat gctcacgtca 1800 aaaggatttg aaaagtgcaa ctacatcaca gatcctgagg aaattctgaa agcactgaac 1860 atgaaggctg cagtcggtgc aatgtacagt ggaaagaaga aagattactt tgaaggaatg 1920 agcgatcacg atgtggaaga ccatcttttt catagttgca agcgtctgtt catgggacac 1980 aaaggtcttt ggaatggatc cttgaaagct gaattgagac ttatggaaaa agtggaactt 2040 aataaaacaa gaaccttcac agcggctcct cttgacacgc tgcttggtgg taaggtgtgt 2100 gtagacgatt tcaataacat gttttacaac caccatttaa aatgtccatg gacggtagga 2160 ataaccaaat tctaccaagg atgggatagg cttctcacat ctctacctga aggatgggtt 2220 tattgtgatg ctgatggctc acaatttgat agttctctct ctccatattt gatcaattca 2280 gttcttaata taagaagaga atttatggaa gattgggatg ttggtgatca aatgcttcgg 2340 aatttataca cagaaatagt gtacacacca atactgacac cagacggaac catagtgaag 2400 aagttcaaag gtaacaacag tggacagcca tctactgtgg ttgataatac acttatggtt 2460 gtgttagcag ttcactacac attgctgaaa ctaggaatcc aagaaagcga gtttgataaa 2520 tgttgtgtct ttttcgcaaa tggtgatgat ttattgttgg caatgaggcc ggacacagcc 2580 catttactgg ataagtttgg tgaatgtttc tctgaattag gactcaatta tgacttttca 2640 tcacgcacaa ataagaagga agatctatgg tttatgtcac actgtggcgt gaaacgtgac 2700 ggaatattta ttccgaagtt ggagcctgaa aggattgttt caattcttga atgggatcgt 2760 tcacacgagc caattcatcg attggaagca atatgtgccg cgatggtgga atcatggggt 2820 tatgatgaac ttcttcatca tattaggaaa ttctatgcat gggttttgga ccaagcccca 2880 tacaatgaac tagcacgaaa tgggaaggca ccatacatag ctgaaactgc actcaaagca 2940 ctctatactg gtgttcaacc taatgcttct gagttgagtg cgtatacgag agtgctcaaa 3000 gaaatgtatg atgacagtat gctccaagag aatgatctgg aagtatatca tcaatctaat 3060 gagcgcactg aatttaaaga tgcaggagcg aaccctccag cccctaagcc taaggacatt 3120 cctccaccac ccacaataac tgaaatcact gatccagagg acccgaagca ggcagctttg 3180 aaagctgcac gagcaaagca accagcagtc attccggaat cgtatggacg agacacgagc 3240 aaagaaaggg agtcgatagt ggggacatca tcaaagggtt tgaaggataa agatgtgaat 3300 gttggcaccg ttggtacatt tgttgtgcca cgtgtcaaga tgaatgcaaa caagaaaagg 3360 caaccaatga tcaatggaag ggccattata aatttccagc acttgtcaac atatgaacca 3420 gagcagtttg aggttgcaaa cacccgttcg actcaagagc aattccaagc atggtatgaa 3480 ggagttaaag gggattacgg tgttgacgac acaggaatgg ggatcttatt aaatggacta 3540 atggtttggt gcattgaaaa tggcacatcc ccaaatataa atggtgtgtg gacaatgatg 3600 gacggtgatg agcaagtgac atacccaatt aaaccattat tggatcatgc agtgcctact 3660 tttaggcaga ttatgacgca cttcagtgac gttgctgaag cctatataga aatgcgaaac 3720 cgtacaaagg cgtacatgcc aagatatggt ctacaacgta atttgactga tatgagtctt 3780 gcgcgatatg catttgattt ttatgagctg cattcaacta cacctgcacg tgctaaagaa 3840 gcacatttac agatgaaggc agctgcactt aagaatgcgc gaaatcggtt gtttggtttg 3900 gacggaaacg tctccacgca agaagaagat acggagaggc acacgacgac tgatgttact 3960 agaaatatac ataacctctt aggaatgagg ggtgtgcaat aggacatcct ctgcactgta 4020 gcttatactt atgttatatt tagtatgcct ttaatttaaa ttcgtgtctt tcagtcccga 4080 aagagatggt tgaatgcata acatggtggg attatatctc ggttattgca tttgagaagt 4140 cacctttcta ttacgtatca taacggactc ttaaaagtga ggagtacctc gtaagaaaag 4200 cctttttggt tcgtgatcga gcc 4223 //