ID FJ795765; SV 1; linear; genomic RNA; STD; VRL; 4222 BP. XX AC FJ795765; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate BUSH4 polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4222 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4222 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (25-FEB-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; 17dcd6214a00d4700ece8bb7d139b31d. XX FH Key Location/Qualifiers FH FT source 1..4222 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea batatas" FT /isolate="BUSH4" FT /mol_type="genomic RNA" FT /country="Uganda:Bushenyi" FT /db_xref="taxon:12844" FT CDS <1..4002 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U7K7" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E1U7K7" FT /protein_id="ACY74497.1" FT /translation="GATSCVLHQTKDALSKHLRLKGVWNKSVITQDLFILAGVFAGGLW FT MIMAGLKESFDQTVLHQGKEKRQMQKLKFRKARDNKLGFEVHADDGTIEHFFGSAYTKK FT GKQKGKVTGMGSKNRKFINMYGFDPTEYSFVRFVDPLTGAVIDDSPYTDILLVQEKIGE FT ARLNAIKEDELSREKVAQNPGIHAYYVNEITNAALKVDLTPHNPLLACERHSTIAGHPE FT YEGVLRQTGPPIKMTLNDVPVNPEEASLVGHESKSLFRGLRDYNPIASVICHLMNEADG FT RTSDCFGIGYGGLIITNRHLFKRNNGTLTIKSRHGEFVIKNTTQLGMKPCADRDILIIR FT MPKDIPPFPQRLKFRVPKENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWID FT TKDGHCGLPLVSTTDGALLGVHSLSNLTNTQNFFASFPENFEVDYLKTPEAMDWIKKWS FT YNPDEICWGTLELKTGQPVAPFKVSKLITDLEGIQVYAQTRSDRWVQDRLHGNLKAVGR FT CPAQLVTKHVVKGKCMLFDLYLQQDQSEREYFKPLMGAYGKSKLNKEAYNKDLFKYATQ FT IQAGDVQVDTFELTERSVVSMLTSKGFEKCNYITDPEEILKALNMKAAVGAMYSGKKKD FT YFEGMSDHDVENHLFHSCKRLFMGHKGLWNGSLKAELRPMEKVELNKTRTFTAAPLDTL FT LGGKVCVDDFNNMFYNHHLKCPWTVGITKFYQGWDRLLTSLPEGWVYCDADGSQFDSSL FT SPYLINSVLNIRREFMEDWDVGDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPST FT VVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANGDDLLLAMRPDTAHLLDKFGECFS FT ELGLNYDFSSRTNKKEDLWFMSHCGVKRDGIFIPKLEPERIVSILEWDRSHEPIHRLEA FT ICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARNGKAPYIAETALKALYTGIQPSI FT SELSVYTRVLNEMYDDSMLQENELEVYHQSSEKTEFKDAGANPPSPKSKINPPPPTITE FT IVDPEDPKQAALKAARAKQPATIPESYGRDTGKEKESIVGTSSKGVRDKDVNVGTVGTF FT VVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQYEVANTRSTQEQFQAWYEGVKGDY FT GVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIM FT THFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQ FT MKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ" FT mat_peptide <1..27 FT /product="cytoplasmic inclusion protein; CI" FT mat_peptide 28..186 FT /product="6K2 protein" FT mat_peptide 187..762 FT /product="VPg protein" FT mat_peptide 763..1491 FT /product="NIa-Pro protein" FT mat_peptide 1492..3054 FT /product="nuclear inclusion body; NIb" FT mat_peptide 3055..3999 FT /product="coat protein; CP" FT 3'UTR 4003..4222 XX SQ Sequence 4222 BP; 1370 A; 764 C; 975 G; 1113 T; 0 other; ggagccacct cttgtgtgct tcatcaaaca aaagatgcac tctcaaagca ccttcgtttg 60 aaaggagtgt ggaataaatc agtcatcaca caggatttgt tcattttagc aggggtattt 120 gctggtggtt tgtggatgat aatggcgggg ctaaaggaat catttgatca aactgtgcta 180 caccaaggaa aagaaaagcg acaaatgcaa aagctgaagt ttaggaaagc gcgagataat 240 aaacttggat tcgaagtgca cgctgatgat ggaactatcg aacacttctt tggtagtgca 300 tacaccaaga aagggaaaca aaaaggaaag gttactggaa tgggatcaaa gaacagaaaa 360 tttataaaca tgtacggatt tgatcctact gaatattcct ttgtccgatt tgttgacccg 420 ttaactggag ctgtgataga tgattcccca tacacagata ttcttcttgt tcaggagaag 480 attggtgagg ctcgtttgaa tgccatcaaa gaagatgaac tttcaagaga gaaagttgca 540 caaaatccag gaattcatgc atactatgtc aacgaaatca caaatgctgc actcaaagtt 600 gatcttacac cgcacaatcc actacttgca tgtgaaagac atagcaccat tgccggtcat 660 cctgaatatg agggagtttt gagacaaacc ggacccccaa tcaagatgac acttaatgac 720 gtgccagtga atcctgaaga ggcaagttta gttgggcatg agagtaagtc actattcaga 780 ggcttaagag attacaaccc aatagcaagt gttatatgtc acctaatgaa tgaagcggat 840 gggagaacaa gcgattgctt tggaattgga tatggtggtc tcattataac aaacaggcat 900 cttttcaaaa gaaacaatgg cacattaaca atcaaatctc gacatggaga atttgttatc 960 aagaacacaa cccaacttgg gatgaaacct tgtgctgaca gagacatact catcattagg 1020 atgcctaaag atatacctcc gtttccgcaa cgcctgaaat ttagggttcc aaaagaaaat 1080 gaaagaatct gcttggttgg atcaaatttt caggataaat caatcacgag cacgatttct 1140 gaaaccagcg taacgtgcca tgtgccaaac tcgcattttt ggaagcactg gatcgataca 1200 aaagatggac attgtggtct tcccttagta agcactactg atggtgcttt gttgggagtg 1260 catagcctat caaatttgac gaacactcag aacttctttg catcatttcc tgagaacttt 1320 gaagtggact atttgaaaac tcctgaggca atggattgga taaagaagtg gagttataat 1380 ccagatgaaa tttgttgggg aacgctggaa ctgaagacag gacaacccgt tgccccattc 1440 aaagtgtcca aactaatcac ggacttagaa ggcatacaag tgtatgctca aacaaggtca 1500 gatagatggg ttcaagatag gctacatggc aatcttaaag cagttggtcg atgtcctgca 1560 caattggtta ctaagcacgt tgtgaaggga aaatgcatgc tatttgacct atatttgcag 1620 caagatcaat ctgaaaggga gtatttcaag cctcttatgg gagcatacgg gaaaagtaaa 1680 ctcaacaaag aggcgtataa taaggatttg tttaagtacg cgacacaaat tcaggcagga 1740 gatgtgcaag tggatacgtt cgaattgacg gaaagatctg ttgtttccat gctcacatca 1800 aaaggatttg aaaagtgcaa ctacatcaca gatccagagg aaattctgaa agcactgaat 1860 atgaaggctg cagtcggtgc gatgtacagt ggaaagaaga aggattactt tgaaggaatg 1920 agtgatcacg atgtagaaaa ccatcttttt cacagttgca agcgtttgtt catgggacac 1980 aaaggtcttt ggaatggatc cttgaaagct gagttgagac ctatggaaaa agtggagctt 2040 aacaaaacaa gaaccttcac agcggctcct cttgacacgt tacttggtgg taaggtgtgt 2100 gtagacgatt tcaacaacat gttttacaac caccatttaa aatgtccatg gacggtagga 2160 ataaccaaat tctatcaagg atgggatagg cttctcacat ctctacctga gggatgggtt 2220 tattgtgacg ctgatggttc acaatttgat agttctctct ctccatattt gattaattca 2280 gttcttaata taagaagaga atttatggag gattgggatg ttggtgatca aatgcttcgg 2340 aatttataca cagaaatagt gtacacacca atactgacac cagatggaac catagtgaag 2400 aagttcaaag gtaacaacag tggacagcca tccactgtgg ttgataatac acttatggtt 2460 gtgttagcag ttcactacac actgctaaaa ctaggaatcc aagaaagcga gtttgataaa 2520 tgctgtgtct ttttcgcaaa tggtgatgat ttattattgg caatgaggcc ggatacagcc 2580 catttactgg ataagtttgg cgaatgtttt tctgaattag gactcaatta tgacttttca 2640 tcacgaacaa ataagaagga agatctatgg tttatgtcac actgtggcgt gaaacgtgat 2700 ggaatattta ttccgaagtt ggagcctgaa aggattgttt caattcttga atgggatcgt 2760 tcacacgagc caattcatcg actggaagca atatgtgccg cgatggtgga atcatggggt 2820 tatgatgaac ttcttcatca tattaggaaa ttctatgcat gggttttgga ccaagcccca 2880 tacaacgaac tagcacgaaa tgggaaagca ccatacatag ctgaaactgc actcaaagca 2940 ctctatactg gtattcaacc tagtatttct gaactgagtg tgtatacaag agtgcttaat 3000 gaaatgtacg atgatagtat gctccaagag aatgagttgg aagtatatca tcaatctagt 3060 gagaagactg aatttaaaga tgctggagcc aaccctccat cccctaagtc taagatcaat 3120 cctccaccac ccacaataac tgagatcgtt gatccggagg acccgaagca agcagcttta 3180 aaagctgcac gagcaaagca acccgcaact attccagaat catatgggcg tgatacgggc 3240 aaagaaaagg aatcaatagt aggaacatca tcaaagggtg tgagagataa agacgtgaat 3300 gttggcacag ttggtacatt tgttgtacca cgtgttaaga tgaatgcaaa caagaagaga 3360 caaccaatgg tcaatggaag ggccattata aatttccaac acttgtcaac atatgaacca 3420 gagcagtatg aagttgcgaa cactcgttcg actcaagagc aattccaagc atggtatgag 3480 ggagttaaag gggattacgg tgttgacgac acaggaatgg ggatcttatt gaatggacta 3540 atggtttggt gcattgaaaa tggcacatcc ccaaatataa atggtgtgtg gacaatgatg 3600 gacggtgatg agcaagtgac atatccaatt aaaccattat tggatcatgc agtgcctact 3660 tttaggcaga ttatgacgca cttcagtgac gttgctgaag cctatataga gatgcgaaac 3720 cgtacaaagg cgtacatgcc aagatatggt ctacaacgta atttgactga tatgagtctt 3780 gcgcgatatg catttgattt ttacgagctg cattcaacta cacctgcacg tgctaaagaa 3840 gcacatttac agatgaaggc agccgcactt aagaatgcgc gaaatcggtt gtttggtttg 3900 gacggaaacg tctccacgca agaagaagat acggagaggc acacgacaac tgatgttact 3960 agaaatatac ataacctctt aggaatgagg ggtgtgcaat aggacatcct ctgcactgta 4020 gcttatactt atgttatttt agtatgcctt taatttaaat tcgtgtcttt cagtcccgaa 4080 ggagatggtt ggatgcataa catggtggga ttatatctcg gttattgcat ttgagaagtc 4140 acctttctat tacgtatcat aagggactct taaaagtgag gagtacctcg taagaaaagc 4200 ctttttggtt cgtgatcgag cc 4222 //