ID FJ795764; SV 1; linear; genomic RNA; STD; VRL; 4223 BP. XX AC FJ795764; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate RUK106 polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4223 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4223 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (25-FEB-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; 74e22261c7d7e7a36c81c0b4d2852545. XX FH Key Location/Qualifiers FH FT source 1..4223 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea wightii" FT /isolate="RUK106" FT /mol_type="genomic RNA" FT /country="Uganda:Rukungiri" FT /db_xref="taxon:12844" FT CDS <1..4002 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U7K6" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E1U7K6" FT /protein_id="ACY74496.1" FT /translation="GATSCVLHQTKDALSKHLRLKGVWNKSVITQDLFILAGVFAGGLW FT MIMAGLKESFDQTVLHQGKEKRQMQKLKFRKARDNKLGFEVHADDGTIEHFFGSAYTKK FT GKQKGKVTGMGSKNRKFINMYGFDPTEYSFVRFVDPLTGAVIDDSPYTDILLVQEKIGE FT ARLNAIKEDELSREKVAQNPGIHAYYVNEITNAALKVDLTPHNPLLACERHSTIAGHPE FT YEGVLRQTGPPIKMTLNDVPVNPEEASLVGHESKSLFRGLRDYNPIASVICHLMNEADG FT RTSDCFGIGYGGLIITNRHLFKRNNGTLTIKSRHGEFVIKNTTQLGMKPCADRDILIIR FT MPKDIPPFPQRLKFRVPKENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWID FT TKDGHCGLPLVSTTDGALLGVHSLSNLTNTQNFFASFPENFEVDYLRTPEAMDWIKKWS FT YNPDEICWGTLELKTGQPVAPFKVSKLITDLEGIQVYAQTRSDRWVQDRLHGNLKAVGR FT CPAQLVTKHVVKGKCMLFDLYLQQDQSEREYFKPLMGAYGKSKLNKEAYNKDLFKYATQ FT IHAGDVQVDTFELAERSVVSMLTSKGFEKCNYITDPEEILKALNMKAAVGAMYSGKKKD FT YFEGMSDHDVENHLFHSCKRLFMGHKGLWNGSLKAELRPMEKVELNKTRTFTAAPLDTL FT LGGKVCVDDFNNMFYNHHLKCPWTVGITKFYQGWDRLLTSLPEGWVYCDADGSQFDSSL FT SPYLINSVLNIRREFMEDWDIGDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPST FT VVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANGDDFLLAMRPDTAHLLDKFGECFS FT EFGLNYYFSSRTNKKKDLWVMSPWGVKRDGIFIPKLEPERIVSILEWDRSHEPIHRLEA FT ICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARNGKAPYIAETALKSLYTGIQPNA FT SELSAYARVLKEMYDDSVLQDNDLEVYHQSKENTEFKDAGANPPAPKPKDIPPPPTITE FT ITEPEDPKQAALKAARAKQPAVIPESYGRDASKERESIVGTSSKGVRDKDVNVGTVGTF FT VVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDY FT GVDDTGMGVLLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIM FT THFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQ FT MKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ" FT mat_peptide <1..27 FT /product="cytoplasmic inclusion protein; CI" FT mat_peptide 28..186 FT /product="6K2 protein" FT mat_peptide 187..762 FT /product="VPg protein" FT mat_peptide 763..1491 FT /product="NIa-Pro protein" FT mat_peptide 1492..3054 FT /product="nuclear inclusion body; NIb" FT mat_peptide 3055..3999 FT /product="coat protein; CP" FT 3'UTR 4003..4223 XX SQ Sequence 4223 BP; 1365 A; 767 C; 974 G; 1117 T; 0 other; ggagccacct cttgtgtgct tcatcaaaca aaagatgcac tctcaaagca ccttcgtttg 60 aaaggagtgt ggaataaatc agtcatcaca caggatttgt ttattttagc aggagtattt 120 gctggtggtt tgtggatgat aatggcggga ctaaaggaat catttgatca aactgtgcta 180 caccaaggaa aagaaaagcg acaaatgcaa aaactgaagt ttaggaaagc gcgagataat 240 aaacttggat tcgaagtgca cgctgatgat ggaactattg aacacttctt tggtagtgca 300 tacaccaaga aagggaaaca aaaaggaaag gttactggaa tgggatcaaa gaacagaaaa 360 tttataaaca tgtacggatt tgatcccact gaatattcct ttgtccgatt tgttgacccg 420 ttaactggag ctgtgataga tgattcccca tacacagata ttcttcttgt tcaggaaaag 480 attggtgagg ctcgtttgaa tgccatcaaa gaagatgaac tttcaagaga gaaagttgca 540 caaaatccag gaattcatgc atactatgtc aatgaaatca caaatgctgc actcaaagtt 600 gatctgacac cgcacaatcc actacttgca tgtgaaagac atagcaccat tgccggtcat 660 cctgaatatg aaggagtttt gagacaaacc ggacccccaa ttaagatgac acttaatgac 720 gtaccagtga atcctgaaga ggcaagttta gttgggcatg agagtaagtc actattcaga 780 ggcctaaggg attacaaccc aatagcaagt gttatatgtc acttaatgaa tgaagcggat 840 gggagaacaa gcgattgttt cggaattgga tacggtggtc tcattataac aaataggcat 900 cttttcaaaa ggaacaatgg cacattaaca attaaatctc gacatggaga atttgttatt 960 aagaacacaa cccagcttgg gatgaaacct tgtgctgaca gagacatact catcattagg 1020 atgcctaagg atatacctcc gtttccacaa cgcctgaaat ttagggttcc aaaagaaaat 1080 gaaagaatct gcttggttgg atcaaacttt caggataaat caatcacgag cacgatttct 1140 gaaaccagcg taacgtgcca tgtgccaaac tcgcattttt ggaagcactg gattgataca 1200 aaagatggac attgtggtct tcccttagta agcactactg atggtgcttt gttgggagtg 1260 catagcctat caaatttgac gaacactcag aacttctttg catcatttcc tgagaacttt 1320 gaagtggact atttgagaac tcctgaggct atggattgga taaagaagtg gagttataac 1380 ccagatgaaa tttgttgggg aacattggaa ctgaagacag gacaacccgt tgccccattc 1440 aaagtgtcca aactaatcac agacttggaa ggcatacaag tgtatgctca aacaaggtca 1500 gatagatggg ttcaagatag actacatggc aatcttaaag cagttggtcg atgtcctgca 1560 caattggtta ctaagcacgt tgtgaaggga aaatgcatgc tatttgactt atatttgcag 1620 caagatcaat ctgaaaggga gtattttaag cctcttatgg gagcatatgg gaaaagtaag 1680 ctcaataaag aggcgtataa taaggacttg tttaagtatg cgacacaaat tcatgcagga 1740 gatgtgcaag tggatacgtt cgaattggca gaaagatctg tcgtttccat gctcacatca 1800 aaaggatttg aaaagtgcaa ctacatcaca gatccagagg aaattctgaa ggcactgaat 1860 atgaaggctg cagtcggtgc gatgtacagt ggaaagaaga aggattactt tgaaggaatg 1920 agtgatcacg atgtagaaaa ccatcttttt cacagttgca agcgtttgtt tatgggacac 1980 aaaggtcttt ggaatggatc cttgaaagct gagttgagac ctatggaaaa agtggaactt 2040 aacaaaacaa gaaccttcac agcggctcct cttgacacgt tacttggtgg taaggtgtgt 2100 gtggacgatt tcaacaacat gttttacaac caccatttga aatgtccatg gacggtagga 2160 ataaccaaat tctaccaagg atgggatagg cttctcacat ctctacctga gggatgggtt 2220 tattgtgacg ctgatggctc acaatttgat agttctctct ctccatattt gattaattca 2280 gttcttaata taagaagaga atttatggag gattgggata ttggtgatca aatgcttcgg 2340 aatttataca cagaaatagt gtacacacca atactgacac cagatggaac catagtgaag 2400 aagttcaaag gtaacaacag tggacagcca tccactgtgg ttgataatac acttatggtt 2460 gtgttagcag ttcactacac actgctgaaa ctaggaatcc aagaaagcga gtttgataaa 2520 tgctgtgtct ttttcgcaaa tggtgatgat tttttgttgg caatgaggcc agatacagcc 2580 catttactgg ataagtttgg tgaatgtttt tctgaatttg gactcaatta ttacttttcc 2640 tcacgaacaa ataaaaaaaa agatctttgg gttatgtcac cctggggcgt gaaacgtgat 2700 ggaatattta tcccgaagtt ggagcctgaa aggattgttt caattcttga atgggatcgt 2760 tcacacgagc caattcatcg actggaagca atatgtgccg cgatggtgga atcatggggt 2820 tatgatgaac ttcttcatca tattaggaaa ttctatgcat gggttttgga ccaagcccca 2880 tataatgaac tagcacgaaa tgggaaagcc ccatacatag ctgaaactgc actcaaatca 2940 ctttatactg gtatccaacc taatgcttct gaattgagtg cgtacgcgag agtgctcaaa 3000 gaaatgtatg atgacagtgt gctccaagac aatgacttgg aagtatatca tcaatctaaa 3060 gagaacactg aatttaaaga tgcaggagcg aaccctccag cccctaagcc taaagacatt 3120 cctccaccac ccacaataac tgaaattact gagccagagg accccaaaca agctgctttg 3180 aaagctgcac gagcaaagca acccgcagtc attccagaat catatggacg agacgcgagc 3240 aaagaaaggg agtcaatagt gggaacatca tcaaagggtg tgagggataa agatgtgaat 3300 gttggcaccg ttggtacatt tgttgtgcca cgtgtcaaga tgaatgcaaa caagaaaagg 3360 caaccaatgg tcaatggaag ggccattata aatttccagc acttgtcaac gtatgaacca 3420 gagcaatttg aggttgcaaa tacccggtcg actcaagaac agttccaagc atggtatgaa 3480 ggagttaaag gggattacgg tgttgacgac acaggaatgg gggtcttatt gaatggacta 3540 atggtttggt gcattgaaaa tggcacatcc ccaaatataa atggtgtgtg gacaatgatg 3600 gatggtgatg agcaagtgac atatccaatt aaaccattac tggaccatgc agtgcctact 3660 tttaggcaga ttatgacgca cttcagtgac gttgctgaag cttacataga gatgcgaaac 3720 cgtacaaagg cgtatatgcc aagatatggt ctacaacgta atttgactga tatgagtctt 3780 gcgcgatatg catttgattt ttacgagctg cattcaacta cacctgcacg tgctaaagaa 3840 gcacatttac agatgaaggc agccgcactt aagaatgcgc gaaatcggtt gtttggtttg 3900 gacggaaacg tctccacgca agaagaagat acggagaggc acacgacaac tgatgttact 3960 agaaatatac ataacctctt aggaatgagg ggtgtgcaat aggacatcct ctgcactgta 4020 gcttatactt atgttatttt tagtatgcct ttaatttaaa ttcgtgtctt tcagtcccga 4080 aggagatggt tgaatgcata acatggtggg attatatctc ggttattgca tttgagaagt 4140 cacctttcta ttacgtatca taagggactc ttaaaagtga agagtacctc gtaagaaaag 4200 cctttttggt tcgtgatcga gcc 4223 //