ID FJ795760; SV 1; linear; genomic RNA; STD; VRL; 4223 BP. XX AC FJ795760; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate HOM89a polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4223 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4223 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (25-FEB-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; 846a6d956ccfff1c4d3eef688d91c3a2. XX FH Key Location/Qualifiers FH FT source 1..4223 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea batatas" FT /isolate="HOM89a" FT /mol_type="genomic RNA" FT /country="Uganda:Hoima" FT /db_xref="taxon:12844" FT CDS <1..4002 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U7K2" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E1U7K2" FT /protein_id="ACY74492.1" FT /translation="GATSCVLHQTKDALSKHLRLKGVWNKSVITQDLFILAGVFAGGLW FT MIMAGLKESFDQTVLHQGKEKRQMQKLKFRKARDNKLGFEVHADDGTIEHFFGSAYTKK FT GKQKGKVTGMGSKNRKFINMYGFDPTEYSFVRFVDPLTGTVMYDSPYTNILLVQEKIGE FT ARLNAIKEDELSREKVAQNPGIHAYYVNEITNAALKVDLTPHNPLLACERHSTIAGHPE FT YEGVLRQTGPPIKMTLNDVPVNPEEASLVGHESKSLFRGLRDYNPIASVICHLMNEADG FT RTSDCFGIGYGGLIITNRHLFKRNNGTLTIKSRHGEFVIKNTTQLGMKPCADRDILIIR FT MPKDIPPFPQRLKFRVPKENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWID FT TKDGHCGLPLVSTTDGALLGVHSLSNLTNTQNFFASFPENFEVDYLKTPEAMDWIKKWN FT YNPDEICWGTLELKTGQPVAPFKVSKLITDLEGIQVYAQTKSDRWVQDRLHGNLKAVGR FT CPAQLVTKHVVKGKCMLFDLYLQQDQSEREYFKPLMGAYGKSKLNKEAYNKDLFKYATQ FT IQAGDVQVDTFELAERSVVSMLTSKGFEKCNYITDPEEILKALNMKAAVGAMYSGKKKD FT YFEGMSDHDVENHLFHSCKRLFMGHKGLWNGSLKAELRPMEKVELNKTRTFTAAPLDTL FT LGGKVCVDDFNNMFYNHHLKCPWTVGITKFYQGWDRLLTSLPEGWVYCDADGSQFDSSL FT SPYLINSVLNIRREFMEDWDVGDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPST FT VVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANGDDLLLAMRPDTAHLLDKFGECFS FT ELGLNYDFSSRTNKKEDLWFMSHCGVKRDGIFIPKLEPERIVSILEWDRSHEPIHRLEA FT ICAAMVESWGYDELLHHIRKFYAWVLNQAPYNELARNGKAPYIAETALKALYTGVQPNA FT SELSAYTRVLKEMYDDSMLQENDLEVYHQSDEKTEFKDAGADPPAPKPKNIPPPPTITE FT ITDPEDPKQAALKAARAKQPAVIPESYGRDTSKERESIVGTSSKGVRDKDVNVGTVGTF FT VVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDY FT GVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIM FT THFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQ FT MKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ" FT mat_peptide <1..27 FT /product="cytoplasmic inclusion protein; CI" FT mat_peptide 28..186 FT /product="6K2 protein" FT mat_peptide 187..762 FT /product="VPg protein" FT mat_peptide 763..1491 FT /product="NIa-Pro protein" FT mat_peptide 1492..3054 FT /product="nuclear inclusion body; NIb" FT mat_peptide 3055..3999 FT /product="coat protein; CP" XX SQ Sequence 4223 BP; 1380 A; 771 C; 966 G; 1106 T; 0 other; ggagccacct cttgtgtgct tcatcaaaca aaagatgcac tctcaaagca ccttcgtttg 60 aaaggagtgt ggaataaatc agtcatcaca caggatttgt tcattttagc aggggtattt 120 gctggtggtt tatggatgat aatggcgggg ctaaaggaat catttgatca aactgtgcta 180 catcaaggaa aagaaaagcg acaaatgcaa aagctgaagt ttaggaaagc gcgagataat 240 aaacttggat tcgaagtgca cgctgatgat ggaactatcg aacacttctt tggtagtgca 300 tacaccaaga aagggaaaca aaaaggaaag gttactggaa tgggatcaaa gaacagaaaa 360 tttataaaca tgtacggatt cgatcccact gaatattcct ttgtccgatt tgttgacccg 420 ctaactggaa ctgtgatgta tgattcccca tacacaaata ttcttcttgt tcaggagaag 480 attggtgagg ctcgtttgaa tgccatcaaa gaagatgaac tttcaagaga gaaagttgca 540 caaaatccag gaattcatgc atactatgtc aatgaaatca caaatgctgc actcaaagtt 600 gatcttacac cgcacaatcc actacttgca tgtgaaagac atagcaccat tgccggtcat 660 cctgaatatg aaggagtttt aagacaaacc ggacccccaa ttaagatgac acttaatgac 720 gtgccagtga atcctgaaga ggcaagttta gttgggcatg agagtaagtc actattcaga 780 ggcttaaggg attacaaccc aatagcaagt gttatatgtc acctaatgaa tgaagcggat 840 gggagaacaa gcgattgctt tggaatcgga tacggtggtc tcattataac aaataggcat 900 cttttcaaaa ggaacaatgg cacattaaca attaaatctc gacatggaga atttgttatc 960 aagaacacaa cccaacttgg gatgaaacct tgtgctgaca gagacatact catcattagg 1020 atgcctaagg atatacctcc gttcccacaa cgcctaaaat ttagggttcc aaaagaaaat 1080 gaaagaatct gcctggttgg atcaaatttt caggataaat caatcacgag cactatttct 1140 gaaacaagcg taacgtgcca tgtgccaaac tcgcattttt ggaaacactg gatcgataca 1200 aaagatggac attgtggtct tcccttagta agcactactg atggtgcttt gttaggagtg 1260 catagcctat caaatttgac gaacactcag aacttctttg catcatttcc tgagaacttt 1320 gaagtggact atttgaaaac tcctgaagca atggattgga taaagaagtg gaattataat 1380 ccagatgaaa tttgttgggg aacgctggaa ctgaagacag gacaacccgt tgccccattc 1440 aaagtgtcca aactaattac tgacttagaa ggcatacaag tgtatgctca aacaaagtca 1500 gatagatggg ttcaagatag actacatggc aaccttaaag cagttggtcg atgtcctgca 1560 caattggtta ctaagcacgt tgtgaaggga aaatgcatgc tatttgacct atatttgcag 1620 caagatcaat ctgaaaggga gtatttcaag cctcttatgg gagcatacgg gaaaagtaag 1680 ctcaacaaag aggcgtataa taaggattta tttaagtatg cgacacaaat tcaggcagga 1740 gatgtgcaag tggatacgtt cgaattggcg gaaagatctg tcgtttccat gctcacatca 1800 aaaggatttg aaaagtgcaa ctacatcaca gatccagagg aaattctgaa agcactgaat 1860 atgaaggctg cagtcggtgc gatgtatagt ggaaagaaaa aggattactt tgaaggaatg 1920 agtgaccacg atgtagaaaa ccatcttttt cacagttgca agcgcttgtt catgggacac 1980 aaaggtcttt ggaatggatc cttgaaagct gagttgagac ctatggaaaa agtggaactt 2040 aacaaaacaa gaaccttcac agcggctcct cttgacacgt tacttggtgg taaggtgtgt 2100 gtagacgatt tcaacaacat gttttacaac caccatttaa aatgtccatg gacggtagga 2160 ataaccaaat tttatcaagg atgggatagg cttctcacat ctctacctga gggatgggtt 2220 tattgtgacg ctgatggctc acaatttgat agttcgctct ctccatactt gattaattca 2280 gttcttaata taagaagaga atttatggaa gattgggatg ttggtgatca aatgcttcgg 2340 aatttataca cagaaatagt gtacacacca atactgacac cagacggaac catagtgaag 2400 aaattcaaag gtaacaacag tggacagcca tccactgtgg ttgataatac acttatggtt 2460 gtgttagcag ttcactacac actactgaaa ttaggaatcc aagaaagcga gtttgataaa 2520 tgctgtgtct ttttcgcaaa tggtgatgat ttattgttag caatgaggcc agatacagcc 2580 catttactgg ataagtttgg tgaatgtttt tctgaattag gactcaatta tgacttttca 2640 tcacgaacaa ataagaagga agatctatgg tttatgtcac actgtggcgt gaaacgtgat 2700 ggaatattta ttccgaagtt ggagcctgaa aggattgttt caattcttga atgggatcgt 2760 tcacacgagc caattcatcg actggaagca atatgtgccg cgatggtgga atcatggggt 2820 tatgatgaac ttcttcatca tattaggaaa ttctatgcat gggttttgaa ccaagcccca 2880 tacaacgaac tagcacggaa tgggaaagct ccatacatag ctgaaactgc actcaaagca 2940 ctctatactg gtgttcaacc taatgcctct gagttgagtg cgtatacgag agtgctcaaa 3000 gaaatgtatg atgacagtat gctccaagaa aatgatttgg aagtatatca tcaatctgat 3060 gagaaaactg aatttaaaga tgcaggagcg gatcctccag cccctaagcc taagaacatt 3120 cctccaccac ccacaataac tgaaatcact gatccagagg atccgaagca ggcagcttta 3180 aaagctgcac gagcaaagca acccgcggtc attccagagt catatggacg agacacgagc 3240 aaagaaaggg aatcaatagt ggggacatca tcaaagggtg tgagggataa agatgtgaat 3300 gttggcaccg ttggtacatt tgttgtgcca cgtgtcaaga tgaatgcaaa taagaaaagg 3360 caaccaatgg tcaatgggag ggccattata aatttccagc acttatcaac atatgaacca 3420 gagcagtttg aggttgcaaa cacccggtca actcaggaac agttccaagc atggtatgaa 3480 ggagttaaag gggattatgg tgttgacgac acagggatgg ggatcttatt gaatggacta 3540 atggtttggt gcattgaaaa tggcacatcc ccaaatataa atggtgtgtg gacaatgatg 3600 gatggtgatg aacaagtaac atatccaatt aaaccattac tggaccatgc agtgcctact 3660 tttaggcaga ttatgacgca cttcagtgac gttgctgaag cttacataga gatgcgaaac 3720 cgtacaaagg catacatgcc aaggtatggt ctacaacgta atttgactga tatgagtctt 3780 gcgcgatatg catttgactt ttacgagctg cattcaacta cacctgcacg tgctaaagaa 3840 gcacatttac agatgaaggc agccgcactt aagaatgcgc gaaatcggtt gtttggtttg 3900 gacggaaacg tctccacgca agaagaagat acggagaggc acacgacaac tgatgttact 3960 agaaatatac ataacctctt aggaatgagg ggtgtgcaat aggacatcct ctgcactgta 4020 gtttatactt atgttatctt tagtatgcct ttaatttaaa ttcgtgtctt tcagtcccga 4080 aggagatggt tgaatgcata acatggtggg attatatctc ggttattgca tttgagaagt 4140 cacctttcta ttacgtatca taagggactc ttaaaagtga ggagtacctc gtaagaaaag 4200 cctttttggt tcgtgatcga gcc 4223 //