ID FJ795756; SV 1; linear; genomic RNA; STD; VRL; 4331 BP. XX AC FJ795756; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate HOM89b polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4331 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4331 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (25-FEB-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; a6383611421b65ddac42517379d41bc9. XX FH Key Location/Qualifiers FH FT source 1..4331 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea batatas" FT /isolate="HOM89b" FT /mol_type="genomic RNA" FT /country="Uganda:Hoima" FT /db_xref="taxon:12844" FT CDS <1..4110 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U7J8" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="UniProtKB/TrEMBL:E1U7J8" FT /protein_id="ACY74488.1" FT /translation="IAVLSSARAQLLEFENLSMDASYNEMSKGILETYVRENGATTCVL FT HQTKSDLAKHLQLKGIWNKSVITQDLLVLAGVFVGGVWMVFSGAKESFEQTVKHQGKEK FT RQRQKLKFRQARDRKLGFEVHADDGTIEHYFGSAYTAKGKQKGKVTGMGAKNRKFINMY FT GFDPTEYSFVRFVDPLTGLVFDDSPYTDIQLVQEKIGDARHKAILEDKLSRERISYNPG FT ISAYYINEITNAALKVDLTPHNPLLACERHNTIAGHPDHEGELRQTGSVIKIDIRDVPE FT NPEEASLVGHESKSLFRGLRDYNPIASVICHLVNEADGRTSDSYGIGYGGLIITNRHLF FT KRNNGTLTIRSRHGEFVIKNTTQLGMKPCADRDILIIKMPKDIPPFPQRLQFRVPKENE FT RICLVGSNFQDKSITSTVSETSVTCHVPNSHFWKHWIDTKDGHCGLPLVSTVDGAILGV FT HSLSNLTNTQNFFAAVPANFEIDYLKTPEATEWIKKWSYNPSEICWGTLELKTGQPVAP FT FKVTKLITDLDSMQVYAQARSDKWVLDRLYGNLKAVGQCPAQLVTKHVVKGKCMLFDLY FT LQQDHDVKSFFKPLMGAYGKSRLNKEAYNKDLFKYATPINAGDVCHKTFEQAELAVVEM FT LKANGFHKCNYITDPEEIVKALNMKAAVGAMYSGKKKDYFDGMSDEDIENLLFHSCKRL FT YMGQKGLWNGSLKAELRPMAKVELNKTRTFTAAPLDTLLGGKTCVDDFNNMFYNNHLKC FT PWTVGITKFYQGWDRLLTSLPENWIYCDADGSQFDSSLSPYLINAVLNIRREFMEEWDI FT GDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPSTVVDNTLMVVLAVYYTLLKLGV FT SEFEISERCVFFANGDDLLIAMRPDTAHLLDSFGECFAELGLNYDFSSRTTKKEELWFM FT SHCGIKRDGMYIPKLEPERIVSILEWDRSHEPVHRLEAICAAMVEAWGYDELLHQIRKF FT YAWVLGQAPYSELARTGKAPYIAETALKSLYTGVQPSADDLSEYTRVLNEMYDDSLLQD FT NDLSVYHQSGNPLEFKDAGANPPAPKPKGPYTAPEITEITEPEDPKQAALREARQKQPA FT VIPESYGRDTGEKPMRSVSPQRVKDKDVNVGTTGTFVVPRVKLHTSKMRQPRVNGLSVV FT NLQHLATYEPEQHNIGNTRSTQEQFRAWYEGVKNDYGVDDAGMAILLNGLMVWCIENGT FT SPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPR FT YGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHMQMKAAALKNAHNRLFGLDGNVSTQ FT EEDTERHTATDVTRNIHNLLGMRGVQ" FT mat_peptide <1..141 FT /product="cytoplasmic inclusion protein; CI" FT mat_peptide 142..300 FT /product="6K2 protein" FT mat_peptide 301..876 FT /product="VPg protein" FT mat_peptide 877..1605 FT /product="NIa-Pro protein" FT mat_peptide 1606..3168 FT /product="nuclear inclusion body; NIb" FT mat_peptide 3169..4107 FT /product="coat protein; CP" FT 3'UTR 4111..4331 XX SQ Sequence 4331 BP; 1361 A; 813 C; 1032 G; 1125 T; 0 other; atagctgtac tatcatcagc cagagcgcaa ctcctcgaat ttgaaaattt gagtatggat 60 gcctcatata acgaaatgag caaaggaatc cttgaaacgt atgtgcgtga gaacggtgct 120 accacttgtg tattacacca gacaaaaagt gatctcgcga agcatctaca gcttaagggc 180 atttggaata aatccgtgat aacacaagat ctcctggtgc tagcaggagt ttttgttggt 240 ggtgtctgga tggtgttttc gggtgcaaag gaatcttttg agcagacagt caaacaccaa 300 ggaaaagaga aaagacaaag gcaaaagttg aagttccggc aggctcgtga taggaaatta 360 ggatttgagg tccacgcaga tgatggaaca attgagcatt actttggaag tgcatacact 420 gcgaaaggaa aacagaaagg aaaggtcacg ggtatggggg cgaagaatag gaagtttata 480 aatatgtatg gttttgaccc gactgagtac tcttttgtga gatttgtgga cccgttgaca 540 ggattggtat ttgatgactc accatataca gatattcaac tggttcaaga aaagattggt 600 gatgcgaggc ataaggcaat acttgaggat aagctctccc gtgagaggat atcatacaat 660 cccgggatta gtgcatatta tatcaatgag attacaaatg cggcattgaa ggtagatctc 720 acaccacaca atccattact tgcatgtgag agacataaca caatagccgg acatccagat 780 catgagggtg agttacggca gactggctcc gttattaaga ttgatattag agatgtgccg 840 gagaacccag aagaagcatc gcttgtgggg catgagagca aatccctttt caggggtttg 900 agggactaca atccaattgc aagtgtaata tgccatttag taaatgaagc agatggtagg 960 acaagtgatt catatggcat tggatatggc ggtctaatca tcacgaatag acatctattc 1020 aagcgtaata atggaactct cacaatacgc tcgcgacatg gggaattcgt gattaagaac 1080 accactcaac tgggtatgaa accatgtgct gaccgtgaca tattgataat aaagatgccc 1140 aaagacatcc caccttttcc acagagactt cagtttaggg ttcccaagga gaatgagcgc 1200 atttgtctag taggttcaaa cttccaagac aaatctatca caagcactgt ctctgaaacg 1260 agtgtcacat gtcatgtacc aaattcacat ttttggaagc attggataga cacaaaagat 1320 gggcattgtg gcttacccct tgtaagcaca gttgatggtg caattctggg ggttcatagc 1380 ttatcaaatc tcacaaacac ccaaaacttc tttgcagctg ttcctgcaaa ctttgagatt 1440 gattacttaa aaacgcccga ggcgactgaa tggattaaga aatggagtta caacccaagc 1500 gaaatctgtt gggggacttt ggaacttaag acaggacaac cagttgcacc ttttaaagtc 1560 accaagttga taacagatct tgacagtatg caagtgtatg ctcaagcgcg ctcagacaaa 1620 tgggtgctag acaggttgta tgggaattta aaagctgtgg gacagtgtcc agcgcaactt 1680 gttacaaaac acgttgtgaa gggaaagtgt atgctttttg atttgtatct tcaacaagat 1740 cacgatgtta aaagcttttt caaaccttta atgggagcat atgggaagag tagattaaac 1800 aaggaagcat acaacaagga tttattcaag tatgcaactc caatcaatgc aggggatgtg 1860 tgtcacaaaa catttgagca ggcagagcta gcagttgtcg agatgctcaa agcaaatggt 1920 tttcataagt gtaactacat tacagatcca gaggaaattg tcaaggcact caacatgaaa 1980 gcagctgttg gagcaatgta tagtggaaag aagaaagact attttgatgg tatgagtgac 2040 gaggatatcg aaaatcttct tttccacagc tgtaagcgtt tgtacatggg gcagaaagga 2100 ctttggaatg gctccttaaa ggctgagctc aggcccatgg caaaggttga attgaacaag 2160 acaagaactt ttacagcggc cccacttgac acacttttgg gtggtaaaac atgtgttgat 2220 gattttaaca atatgtttta caacaaccat ctcaagtgcc catggacagt aggtatcaca 2280 aaattctatc aaggatggga tagattgtta acatctttac ctgaaaattg gatttattgt 2340 gatgcggatg gctcgcaatt tgacagctct ttgtcaccct atcttattaa tgccgtcctc 2400 aatatacgga gggaattcat ggaagaatgg gacatagggg accaaatgct ccgaaatttg 2460 tacacagaga ttgtatacac gccgattcta acaccagatg gaaccatagt gaagaagttc 2520 aaaggaaata acagtgggca accatcaacc gtcgtggaca atacactgat ggttgtgttg 2580 gccgtctact acactttgct gaaattgggt gtttcagagt tcgagatcag tgaacggtgc 2640 gtattctttg caaatgggga tgatctactg atagctatga gaccagatac agctcatctt 2700 ttggatagct tcggtgagtg ctttgctgag cttgggctta actatgactt ctcatcaagg 2760 acaaccaaga aagaggaatt atggttcatg tctcactgtg gaatcaaacg agatggaatg 2820 tacattccca aactcgagcc tgaacgaata gtatctattc ttgaatggga tagatcacat 2880 gagcctgtac acagacttga agcaatttgt gctgcaatgg tggaagcgtg gggctacgat 2940 gaacttctcc accaaattag aaaattttat gcatgggtct tgggacaagc accatacagt 3000 gaactagcac gaactggaaa ggccccatat attgctgaaa ctgcacttaa atcattgtac 3060 actggagtac aacctagcgc tgacgatctc agcgagtaca cgcgtgttct taacgagatg 3120 tatgatgata gcctcctcca agacaatgac ttatcggtgt atcatcaatc tggcaacccc 3180 cttgaattta aagatgcggg tgcaaatcca ccagcaccaa aaccaaaagg gccatataca 3240 gcaccagaga tcacagagat tactgaaccg gaggatccta aacaagctgc acttcgcgaa 3300 gctagacaga aacaacctgc tgtcataccc gaatcatacg gtagagacac aggtgaaaaa 3360 cctatgcgtt ctgtttcacc acaaagggtg aaagataagg atgtcaacgt tggcacgaca 3420 ggtacatttg tggtgccacg agttaagctc catactagca aaatgcggca acctagagtt 3480 aatggacttt ctgtagtaaa cttacaacac cttgcaactt atgaacctga gcaacataac 3540 attgggaata cacgctcaac tcaggaacag tttcgagcat ggtatgaagg tgttaagaat 3600 gattatggtg ttgatgatgc tggaatggca atcttgttga atggattgat ggtatggtgc 3660 atagagaatg gaacatctcc aaatataaat ggcgtttgga ctatgatgga tggggatgaa 3720 caagtaacgt accccataaa gccattactg gatcatgcag tgcctacttt taggcaaatc 3780 atgacacact tcagtgacgt tgctgaggcg tatatagaaa tgagaaatcg caccaaggca 3840 tatatgccta ggtatggatt acaacgtaac ttgactgata tgagtcttgc gcgatatgca 3900 ttcgatttct atgagctgca ctcaacaaca cctgcacgtg ctaaagaagc acacatgcag 3960 atgaaagcag ctgcacttaa gaatgcgcat aatcggttgt ttggtttgga tggaaacgtc 4020 tccacgcaag aagaggatac ggagaggcac actgcgactg atgttactag aaatatacat 4080 aacctcttag gaatgagggg tgtgcagtag gtgaaacttt gcactgtatt tatttactta 4140 tgtgatttta gtatgccttt atttaaattc gtgttcttca gtcccgacag agatggttgg 4200 gtgtatcggc agagtgggtt tttagcctgg tctatacact tgagaagttt ctggtctatt 4260 acgtatcata agggactctt aaaagtgagg agtacctcgt aagaaaagct tttttggttc 4320 ggaatcgagc c 4331 //