ID FJ795754; SV 1; linear; genomic RNA; STD; VRL; 4332 BP. XX AC FJ795754; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate RUK74b polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4332 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4332 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (25-FEB-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; ed643e73b8ac1d00cc4da0d1d20f918e. XX FH Key Location/Qualifiers FH FT source 1..4332 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea batatas" FT /isolate="RUK74b" FT /mol_type="genomic RNA" FT /country="Uganda:Rukungiri" FT /db_xref="taxon:12844" FT CDS <1..4110 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U7J6" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="UniProtKB/TrEMBL:E1U7J6" FT /protein_id="ACY74486.1" FT /translation="IAVLSSARAQLLEFENLSMDASYNEMSKGILETYVRRNGATTCVL FT HQTKSDLAKHLQLKGIWNKSVITQDLLVLAGVFVGGIWMVFSGAKESFEQTVKHQGKEK FT RQRQKLKFRQARDRKLGFEVHADDGTIEHYFGSAYTAKGKQKGKVTGMGAKNRKFINMY FT GFDPTEYSFVRFVDPLTGLVFDDSPYTDIQLVQEKIGDARHKAILEDKLSRERISYNPG FT ISAYYINEITNAALKVDLTPHNPLLACERHNTIAGHPDHEGELRQTGSVVKIDIRDVPE FT NPEEASLVGHESKSLFRGLRDYNPIASVICHLVNEADGRTSDSYGIGYGGLIITNRHLF FT KRNNGTLTIRSRHGEFVIKNTTQLGMKPCADRDILIIKMPKDIPPFPQRLQFRVPKENE FT RICLVGSNFQDKSITSTVSETSVTCHVTNSHFWKHWIDTKDGHCGLPLVSTVDGAILGV FT HSLSNLTNTQNFFAAVPANFEIDYLKTPEATEWIKKWSYNPSEICWGTLELKTGQPVAP FT FKVTKLITDLDSMQVYAQARSDKWVLDRLYGNLKAVGQCPAQLVTKHVVKGKCMLFDLY FT LQQDHDVRSFFKPLMGAYGKSRLNKEAYNKDLFKYATPINAGDVCHKTFEQAEIVVVEM FT LKANGFHKCNYITDPEEIVKALNMKAAVGAMYSGKKKDYFDGMSDEDIENLLFHSCKRL FT YMGQKGLWNGSLKAELRPMAKVELNKTRTFTAAPLDTLLGGKTCVDDFNNMFYNNHLKC FT PWTVGITKFYQGWDRLLTSLPENWIYCDADGSQFDSSLSPYLINAVLNIRREFMEEWDI FT GDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPSTVVDNTLMVVLAVHYTLLKLGV FT SEFEISERCVFFANGDDLLIAMRPDTAHLLNSFGECFAELGLNYDFSSRTTKREELWFM FT SHCGIKRDGMYIPKLEPERIVSILEWDRSHEPVHRLEAICAAMVEAWGYDELLHQIRKF FT YAWVLGQAPYSELARTGKAPYIAETALKSLYTGVQPSANDLSEYTRVLNEMYDDSLLQD FT NDSSVYHQSGNPPEFKDAGAISPEPKPKGPYTAPEITEITEPEDPKQAALREARQKQPA FT VIPESYGRDTGEKPMRSVSPQRVKDKDVNVGTTGTFVVPRVKLHTSKMRQPRVNGLSVV FT NLQHLATYEPEQHNIGNTRSTQEQFRAWYEGVKGDYGVDDAGMAILLNGLMVWCIENGT FT SPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPR FT YGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHMQMKAAALKNAHNRLFGLDGNVSTQ FT EEDTERHTATDVTRNIHNLLGMRGVQ" FT mat_peptide <1..141 FT /product="cytoplasmic inclusion protein; CI" FT mat_peptide 142..300 FT /product="6K2 protein" FT mat_peptide 301..876 FT /product="VPg protein" FT mat_peptide 877..1605 FT /product="NIa-Pro protein" FT mat_peptide 1606..3168 FT /product="nuclear inclusion body; NIb" FT mat_peptide 3169..4107 FT /product="coat protein; CP" FT 3'UTR 4111..4332 XX SQ Sequence 4332 BP; 1359 A; 823 C; 1038 G; 1112 T; 0 other; atagctgtac tatcatcagc cagagcgcaa ctcctcgaat ttgaaaattt gagtatggat 60 gcctcatata acgaaatgag caaaggaatc cttgaaacgt acgtgcgaag aaacggtgcc 120 accacttgtg tattacacca aacgaaaagt gatctcgcga agcatctaca gcttaagggc 180 atttggaata aatccgtgat aacacaagat ctcctggtac tagcaggagt ttttgttggt 240 ggtatatgga tggtgttttc gggtgcaaag gaatcttttg agcagacagt taaacaccaa 300 ggaaaagaga aaagacaaag gcaaaagttg aagttccgac aggctcgtga taggaaacta 360 ggatttgagg tccatgcaga tgatggcaca attgagcatt actttggaag tgcctacacc 420 gcgaaaggaa aacagaaagg aaaggtcacg ggtatggggg cgaagaatag gaagtttata 480 aatatgtatg gcttcgaccc gactgagtac tcttttgtaa gatttgtgga cccgttgaca 540 ggattggtat ttgatgactc accatacaca gatattcaac tggttcaaga aaagattggt 600 gatgcgaggc ataaggcaat acttgaggat aagctctccc gtgagaggat atcatacaat 660 cctgggatta gtgcatatta tatcaatgag attacaaatg cggcattgaa ggtagatctc 720 acaccacata acccgttact tgcatgtgag agacataaca caatagctgg acatccagat 780 catgagggtg agttacggca aactggctcc gttgttaaga ttgatattag agatgtgccg 840 gagaacccag aggaagcatc gcttgtggga catgagagca aatccctttt caggggtttg 900 agggactaca atccaattgc aagtgtaata tgccatttag taaatgaagc agatggtagg 960 acaagtgatt catatggcat tggatatggc ggtctaatca tcacgaatag acatctattc 1020 aagcgtaata atggaactct cacaatacgc tcgcgacatg gggaattcgt gattaagaac 1080 accactcaac tgggtatgaa accatgtgct gaccgtgaca tattgataat aaagatgccc 1140 aaagacatcc caccttttcc acagagactt cagtttaggg ttcccaagga gaatgagcgc 1200 atttgtctag taggttcaaa cttccaagac aaatctatca caagcactgt ctctgaaacg 1260 agtgtcacat gtcatgtaac aaactcacat ttttggaagc attggataga cacaaaagat 1320 ggacattgtg gcttacctct tgtaagcaca gttgatggtg caattctggg ggttcatagc 1380 ttgtcaaatc tcacaaacac ccaaaacttc tttgcagctg tccctgcaaa ctttgagatt 1440 gattacttaa aaacgcccga ggcgactgaa tggattaaga aatggagtta caacccaagc 1500 gaaatctgtt gggggacttt ggaactaaag acaggacaac cagttgcacc ttttaaagtc 1560 accaagttga taacagatct tgacagtatg caggtgtatg ctcaagcgcg ctcggataaa 1620 tgggtgctag acaggttgta tgggaatttg aaagctgtgg gacagtgtcc agcgcaactt 1680 gttacaaaac acgttgtgaa gggaaagtgt atgctttttg atttgtatct tcaacaagat 1740 cacgatgtta gaagcttttt caaacctttg atgggagcat atgggaagag tagactgaac 1800 aaggaagcat acaacaagga tttattcaag tatgcaactc caatcaatgc aggggatgtg 1860 tgtcacaaaa catttgagca ggcagagata gtagttgtcg agatgctcaa agcaaatggt 1920 ttccacaagt gtaactacat aacagatccg gaggaaattg tcaaggcact caacatgaaa 1980 gcagctgtcg gagcaatgta tagtggaaag aagaaagact attttgatgg tatgagcgac 2040 gaggatatcg agaatcttct ttttcacagc tgtaagcggt tgtatatggg gcagaaagga 2100 ctttggaatg gctccttaaa ggctgagctc agacccatgg caaaagttga attgaacaaa 2160 acaagaactt ttacagcggc cccacttgac acacttttgg gcggtaaaac atgtgttgat 2220 gattttaaca acatgtttta caacaaccac ctcaagtgcc catggacagt aggcatcaca 2280 aaattctatc aaggatggga tagattgtta acatctttac ctgagaattg gatttattgt 2340 gatgcggatg gttctcagtt tgacagctct ctgtcaccct atcttattaa tgctgtcctc 2400 aatatacgga gggaattcat ggaagaatgg gacatagggg atcaaatgct ccgaaatttg 2460 tacacagaga ttgtatacac gccgattcta acaccagatg ggaccatagt gaagaagttc 2520 aaaggaaata acagtgggca accatcaacc gtcgtggaca atacactgat ggttgtgttg 2580 gccgttcact acactttgtt gaaattgggt gtttcagagt tcgagatcag tgaacggtgt 2640 gtattctttg caaatgggga tgatctactg atagccatga gaccagatac agctcatctt 2700 ttgaatagct tcggtgagtg ctttgctgag cttgggctta actatgactt ctcatcaagg 2760 acaaccaaga gagaggaatt atggttcatg tctcactgtg gaatcaaacg agatggaatg 2820 tacattccta aacttgagcc tgaacgaata gtatctattc ttgaatggga tagatcacat 2880 gagcctgtac acagacttga agcaatttgt gctgcaatgg tggaagcgtg gggctatgat 2940 gaacttctcc accaaataag aaaattttat gcatgggtct taggacaagc accatacagt 3000 gaactagcac gaactggaaa ggccccatat attgctgaaa ctgcacttaa atcattgtac 3060 actggagtac aacctagcgc taacgatctc agcgagtaca cgcgtgttct taacgagatg 3120 tatgatgata gccttctcca agacaatgac tcatcggtat atcatcagtc tggcaacccc 3180 cctgaattta aagatgcggg tgcgatctca cccgaaccaa aaccaaaagg gccatataca 3240 gcaccagaaa tcacagagat tactgagcca gaggatccca aacaagctgc gcttcgcgaa 3300 gctagacaga aacaacccgc tgtcataccc gaatcatacg gtagagacac aggtgagaaa 3360 cctatgcgct ctgtttcacc acaaagggtg aaagacaagg atgtcaacgt tggcacgaca 3420 ggcacatttg tagtgccacg agttaagctc catactagca aaatgcgaca acctagagtt 3480 aatggactct ctgtagtaaa cttacaacac ctcgcaactt atgaacctga gcaacataac 3540 attgggaata cacgctcaac tcaggaacag tttcgagcat ggtatgaagg tgttaagggt 3600 gattatggcg ttgatgatgc tggaatggca atcttgttga atggattgat ggtatggtgc 3660 atagagaatg gaacatctcc aaatataaat ggcgtttgga cgatgatgga tggggatgaa 3720 caagtgacgt accccataaa gccattactg gatcatgcag tgcctacttt taggcaaatc 3780 atgacacact tcagtgacgt tgctgaagcg tatatagaaa tgagaaatcg caccaaggca 3840 tatatgccta ggtatggatt acaacgtaat ttgactgata tgagtcttgc gcgatatgca 3900 tttgatttct atgagctgca ctcaacaaca cctgcacgtg ctaaagaagc acacatgcag 3960 atgaaagcag ctgcacttaa gaatgcgcat aatcggttgt ttggtttgga tggaaacgtc 4020 tccacgcaag aagaggatac ggagaggcac actgcgactg atgttactag aaatatacat 4080 aacctcttag gaatgagggg tgtgcagtag gtgaaacttt gcactgtatt tatttactta 4140 tgtggttttt agtatgcctt tatttaaatt tgtgtccttc agtcccgaca gagatggttg 4200 ggtgtatcgg cagagtgggt ttttagcctg gtctatacac ttgagaagtt tctggtctat 4260 tacgtatcat aagggactct taaaagtgag gagtacctcg taagaaaagc ctttttggtt 4320 cgtgatcgag cc 4332 //