ID FJ795753; SV 1; linear; genomic RNA; STD; VRL; 4333 BP. XX AC FJ795753; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate HOM12 polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4333 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4333 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (25-FEB-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; ed296bfa48c34ed72e702fe71addf374. XX FH Key Location/Qualifiers FH FT source 1..4333 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea batatas" FT /isolate="HOM12" FT /mol_type="genomic RNA" FT /country="Uganda:Hoima" FT /db_xref="taxon:12844" FT CDS <1..4110 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U7J5" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="UniProtKB/TrEMBL:E1U7J5" FT /protein_id="ACY74485.1" FT /translation="IAVLSSARAQLLEFENLSMDASYNEMSKGILETYVRENGATTCVL FT HQTKSDLAKHLQLKGIWNKSVITQDLLVLAGVFVGGIWMVFSGAKESFEQTVKHQGKEK FT RQRQKLKFRQARDRKLGFEVHADDGTIEHYFGSAYTAKGKQKGKVTGMGAKNRKFINMY FT GFDPTEYSFVRFVDPLTGLVFDDSPYTDIQLVQEKIGDARHKAILEDKLSRERISYNPG FT ISAYYINEITNAALKVDLTPHNPLLACERHNTIAGHPDHEGELRQTGSVVKIDIRDVPE FT NPEEASLVGHESKSLFRGLRDYNPIASVICHLVNEADGRTSDSYGIGYGGLIITNRHLF FT KRNNGTLTIRSRHGEFVIKNTTQLGMRPCADRDILIIKMPKDIPPFPQRLQFRVPKENE FT RICLVGSNFQDKSITSTVSETSVTCHVPNSHFWKHWIDTKDGHCGLPLVSTVDGAILGV FT HSLSNLTNTQNFFAAVPANFEIDYLKTPEATEWIKKWSYNPSEICWGTLELKTGQPVAP FT FKITKLITDLDSMQVYAQARSDKWVLDRLYGNLKAVGQCPAQLVTKHVVKGKCMLFDLY FT LQQDHDVRNFFKPLMGAYGKSRLNKEAYNKDLFKYATPINAGDVCHKTFEQAELAVVEM FT LKANGFHKCNYITDPEEIVKALNMKAAVGAMYSGKKKDYFDGMSDEDIENLLFHSCKRL FT YMGQKGLWNGSLKAELRPMAKVELNKTRTFTAAPLDTLLGGKTCVDDFNNMFYNNHLKC FT PWTVGITKFYQGWDRLLTSLPENWIYCDADGSQFDSSLSPYLINAVLNIRREFMEEWDI FT GDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPSTVVDNTLMVVLAVYYTLLKLGV FT SEFEINERCVFFANGDDLLIAMRPDTAHLLDSFGECFAELGLNYDFSSRTTKKEELWFM FT SHCGIKRDGMYIPKLEPERIVSILEWDRSHEPVHRLEAICAAMVEAWGYDELLHQIRKF FT YAWVLGQAPYSELARTGKAPYIAETALKSLYTGVQPSADDLSEYTRVLNEMYDDSLLQD FT NDLSVYHQSGNPPEFKDAGANPPAPKPKGPYTAPEITEITEPEDPKQAALREARQKQPA FT VTPESYGRDTGEKSMRSVSPQRVKDKDVNVGTTGTFVVPRVKLHTSKMRQPRVNGLSVV FT NLQHLATYEPEQHNIGNTRATQEQFRAWYEGVKGDYGVDDAGMAILLNGLMVWCIENGT FT SPNINGVWAMMDGDEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPR FT YGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHMQMKAAALKNAHNRLFGLDGNVSTQ FT EEDTERHTATDVTRNIHNLLGMRGVQ" FT mat_peptide <1..141 FT /product="cytoplasmic inclusion protein; CI" FT mat_peptide 142..300 FT /product="6K2 protein" FT mat_peptide 301..876 FT /product="VPg protein" FT mat_peptide 877..1605 FT /product="NIa-Pro protein" FT mat_peptide 1606..3168 FT /product="nuclear inclusion body; NIb" FT mat_peptide 3169..4107 FT /product="coat protein; CP" FT 3'UTR 4111..4333 XX SQ Sequence 4333 BP; 1356 A; 827 C; 1036 G; 1114 T; 0 other; atagctgtac tatcatcagc cagagcacaa ctcctcgaat ttgaaaattt gagtatggat 60 gcctcataca acgaaatgag caaaggaatc cttgaaacgt atgtgcgtga gaacggtgct 120 actacttgtg tattacacca aacaaaaagt gatctcgcga agcatcttca gcttaagggc 180 atttggaata aatccgtgat aacacaagat ctcctggtac tagcaggagt ttttgttggt 240 ggtatatgga tggtgttttc gggtgcaaag gaatcttttg agcagacagt taaacaccaa 300 ggaaaagaga aaagacaaag gcaaaagttg aagttccggc aggctcgtga taggaaacta 360 ggatttgagg tccacgcaga tgatggcaca attgagcatt actttggaag tgcctacact 420 gcgaagggaa aacagaaagg aaaggtcacg ggtatggggg cgaagaatag gaagtttata 480 aatatgtatg gcttcgaccc gactgagtac tcttttgtga gatttgtgga tccgttgaca 540 gggttggtat ttgatgactc accatacaca gatattcaac tggttcaaga aaagattggt 600 gatgcgaggc ataaggcaat acttgaggat aagctctccc gcgagaggat atcatacaat 660 cctgggatta gtgcatatta tatcaatgag attacaaatg cggcattgaa ggtagatctc 720 acgccacaca acccattact tgcatgtgag agacataaca caatagctgg acatccagat 780 catgagggtg agttacggca gactggctcc gttgttaaaa ttgatattag agatgtgccg 840 gagaacccag aagaagcatc gcttgtggga catgagagca aatccctttt caggggtttg 900 agggactaca atccaattgc aagtgtaata tgccatttag taaatgaagc agatggtagg 960 acaagcgatt catatggcat tggatatggc ggtctaatca tcacgaatag acatctattc 1020 aagcgtaata atggaactct cacaatacgc tcgcgacatg gggaattcgt gattaagaat 1080 accactcaac tgggtatgag accatgtgct gaccgcgaca tattgataat aaagatgccc 1140 aaagacatcc caccttttcc acagagactt cagtttaggg ttcccaagga gaatgagcgc 1200 atttgtctag taggttcaaa ctttcaagac aaatctatca caagcactgt ctctgaaacg 1260 agtgtcacat gtcatgtacc aaactcacat ttttggaagc attggataga cacaaaagat 1320 ggacattgtg gcttacctct tgtaagcaca gttgacggtg cgattctggg ggttcatagc 1380 ttgtcaaatc tcacaaacac ccaaaacttc tttgcagctg tccctgcaaa ctttgagatt 1440 gattacttaa aaacgcccga ggcaactgaa tggatcaaga aatggagtta caatccaagc 1500 gaaatctgtt gggggacttt ggaactcaag acaggacaac cagttgcacc ttttaaaatc 1560 accaagttga taacagatct tgacagtatg caagtgtatg ctcaagcgcg ctcagacaaa 1620 tgggtgctag acaggttgta tgggaatttg aaagctgtgg gacagtgtcc agcgcaactt 1680 gttacaaaac acgttgtgaa gggaaagtgt atgctttttg atttgtatct tcaacaagat 1740 catgatgtta gaaacttttt caaaccttta atgggagcat atgggaagag tagattgaac 1800 aaggaagcat acaacaagga tttattcaaa tatgcaactc caatcaatgc aggggatgtg 1860 tgtcacaaaa catttgagca ggcagagcta gcagttgtcg agatgctcaa agcaaatggt 1920 ttccacaagt gtaactacat tacagatccg gaggaaattg tcaaggcact caacatgaaa 1980 gcagctgtcg gagcaatgta tagtggaaag aagaaagact attttgatgg tatgagtgat 2040 gaggatatcg aaaatcttct ttttcacagc tgtaagcggt tgtacatggg gcagaaagga 2100 ctttggaatg gctccttaaa ggctgagctc agacccatgg caaaagttga attgaacaaa 2160 acaagaactt ttacagcggc cccacttgac acactcttgg gtggtaaaac atgtgttgat 2220 gattttaaca atatgttcta caacaaccac ctcaagtgcc catggacagt aggcatcaca 2280 aaattctatc aaggatggga tagattgtta acatctttac ctgaaaattg gatttattgt 2340 gatgcggatg gttctcaatt tgacagctct ctgtcaccct atcttattaa tgctgtcctc 2400 aatatacgga gggaattcat ggaagaatgg gacatagggg accaaatgct ccgaaatttg 2460 tacacagaga ttgtatacac gccgattcta acaccagatg gaaccatagt gaagaagttc 2520 aaaggaaata acagtgggca accatcaact gtcgtggaca acacactgat ggttgtgttg 2580 gccgtctact acactttgtt gaaattgggt gtttcagagt tcgagatcaa tgaacggtgt 2640 gtattctttg caaatgggga tgatctactg atagctatga gaccagacac agcccatctt 2700 ttggatagct ttggtgagtg ctttgctgag cttggactta actatgactt ctcgtcaagg 2760 acaaccaaga aagaggaatt atggttcatg tctcactgtg gaatcaaacg agatggaatg 2820 tacattccca aactcgagcc tgaacgaata gtatctattc ttgaatggga tagatcacat 2880 gaacctgtac acagacttga agcaatttgt gctgcaatgg tggaagcatg gggctacgat 2940 gaacttctcc accaaattag aaaattttat gcatgggtct taggacaagc accatacagt 3000 gaactagcac gaactggaaa ggccccatat attgctgaaa ctgcacttaa atcattgtac 3060 actggagtac aacctagcgc tgatgacctc agtgagtaca cgcgtgttct taacgagatg 3120 tatgatgata gccttcttca agacaatgac ttatcggtgt atcatcagtc tggcaaccct 3180 cctgaattta aagatgcggg tgcaaaccca ccagcaccaa agccaaaagg gccatataca 3240 gcaccagaaa tcacagagat tactgagccg gaggatccca aacaagctgc gctccgcgaa 3300 gctagacaga aacaacctgc tgtcacaccc gaatcatatg gtagagacac aggtgagaaa 3360 tctatgcgct ctgtttcacc acaaagggtg aaagacaagg atgtcaacgt tggcacgaca 3420 ggcacatttg tggtgccacg agttaagctc catactagca aaatgcggca acctagagtt 3480 aatggactct ctgtagtaaa cttacaacac ctcgcaactt atgaacctga gcaacataac 3540 attgggaata cacgcgcaac tcaggaacag tttcgagcat ggtatgaagg tgttaagggt 3600 gattatggtg ttgatgatgc tggaatggca atcttgttga atggattgat ggtgtggtgc 3660 atagagaatg gaacatctcc aaatataaat ggcgtttggg cgatgatgga tggggatgaa 3720 caagtgacgt accccataaa gccattactg gatcatgcag tgcctacttt taggcaaatc 3780 atgacacact tcagtgacgt tgctgaagcg tatatagaaa tgagaaatcg caccaaggca 3840 tatatgccta ggtatggatt acaacgtaac ttgactgata tgagtcttgc gcgatatgca 3900 tttgatttct atgagctgca ttcaacaaca cccgcacgtg ctaaagaagc acacatgcag 3960 atgaaagcag ctgcacttaa gaatgcgcat aatcggttgt ttggtttgga tggaaacgtc 4020 tccacgcaag aagaggatac ggagaggcac actgcgactg atgttactag aaatatacat 4080 aacctcttag gaatgagggg tgtgcagtag gtgaaacttt gcactgtatt tatttactta 4140 tgtggttttt agtatgcctt ttatttaaat tcgtgtcctt cagtcccgac agagatggtt 4200 gggtgtatcg gcagagtggg tttttagcct ggtccataca cttgagaaat ttctggtcta 4260 ttacgtatca taagggactc ttaaaagtga ggagtacctc gtgagaaaag cctttttggt 4320 tcgtgatcga gcc 4333 //