ID FJ795750; SV 1; linear; genomic RNA; STD; VRL; 5025 BP. XX AC FJ795750; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate ARU60b polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-5025 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-5025 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (25-FEB-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; b53709c14204875d9af3fab672031e2a. XX FH Key Location/Qualifiers FH FT source 1..5025 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea batatas" FT /isolate="ARU60b" FT /mol_type="genomic RNA" FT /country="Uganda:Arua" FT /db_xref="taxon:12844" FT CDS <1..4803 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U7J2" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:E1U7J2" FT /protein_id="ACY74482.1" FT /translation="RIGYTEKGLVDIPQTVATEAAFLCFAYGLPVMTPNVSTSLLGSCT FT VKQARTMLQFELTPFYMVNMVRFDGSMHHAIHQLLKRYKLRDAETTLNKLAIPNRGITG FT WISAADYRKVGQRLDIEDQVRIPFYHQSMPEKLHSDIWEAIQRYKHEAGFGRVSCINSC FT KIAYTLQTDVYAIPRTIKILDALIADEMRKKEHYKTITYRTVSSSSFSVGSIATLWRNR FT YAQDYTSENIAVLSSARAQLLEFENLSMDASYNEMSKGILETYVRENGATTCVLHQTKS FT DLARHLQLKGIWNKSVITQDLLVLAGVFVGGIWMVFSGAKESFEQTVRHQGKEKRQRQK FT LKFRQARDRKLGFEVHADDGTIEHYFGSAYTAKGKQKGKVTGMGAKNRKFINMYGFDPT FT EYSFVRFVDPLTGLVFDDSPYTDIQLVQEKIGDARHKAILEDKLSRERISYNPGISAYY FT INEITNAALKVDLTPHNPLLACERHNTIAGHPDHEGELRQTGSVVKVDIRDVPENPEEV FT SLVGHESKSLFRGLRDYNPIASVICHLVNEADGRTSDSYGIGYGGLIITNRHLFKRNNG FT TLTIRSRHGEFVIKNTTQLGMKPCADRDILIIKMPKDIPPFPQRLQFRIPRENERICLV FT GSNFQDKSITSTVSETSVTCHVPNSHFWKHWIDTKDGHCGLPLVSTVDGAILGVHSLSN FT LTNTQNFFAAVPANFEIDYLKTPEATEWIKKWSYNPSEICWGTLELKTGQPVAPFKVTK FT LITDLDSMQVYAQARSDKWVLDRLYGKLKAVLLCPAQLVTKHVVKGKCMLFDLYLQQDC FT DVRSFFKPLMGAYGKSRLNKEAYNKDLFKYATPINAGEVCHKTFEQAELAVVEILRANG FT FHKCNSITVPEEIVKALNMKAAVGAMQSGKNKAYFDEMSDKDIEDLLFHSCKRLYMGQK FT GLWNGSLKAELRPMAKVELNKTRTFTAAPLDTLLGGKTCVDDFNNMFYNNHLKCPWTVG FT ITKFYQGWDRLLTSLPENWIYCDADGSQFDSSLSPYLINAVLNIRREFMEEWDIGDQML FT RNLYTEIVYTPILTPDGTIVKKFKGNNSGQPSTVVDNTLMVVLAVYYTLLKLGVSEFEI FT SKRCVFFANGDDLLIAMRTDTAHLLDSFSECFAELGLNYDFSSRTTKKEELWFMSHCGI FT KRDGMYIPKLEPERIVSILEWDRSHEPVHRLEAICAAMVEAWGYDELLHQIRKFYAWVL FT GQAPYSELARTGKAPYIAETALKSLYTGVQPSADDLSEYTRVLNEMYDDSLLQDNDLSV FT YHQSGNPSEFKDAGANPPAPKPKGPYTAPEITEVTEPEDPKQAALREARQKQPAVIPES FT YGRDTGEKPMRSVSPQRVKDKDVNVGTTGTFVVPRVKLHTSKMRQPRINGISVVNLQHL FT ATYEPEQHNIGNTRSTQEQFRAWYEGVKGDYGVDDAGMAILLNGLMVWCIENGTSPNIN FT GVWTMMDGDEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYGLQR FT NLTDMSLARYAFDFYELHSTTPARAKEAHMQMKAAALKNAHNRLFGLDGNVSTQEEDTE FT RHTATDVTRNIHNLLGMRGVQ" FT mat_peptide <1..834 FT /product="cytoplasmic inclusion protein; CI" FT mat_peptide 835..993 FT /product="6K2 protein" FT mat_peptide 994..1569 FT /product="VPg protein" FT mat_peptide 1570..2298 FT /product="NIa-Pro protein" FT mat_peptide 2299..3861 FT /product="nuclear inclusion body; NIb" FT mat_peptide 3862..4800 FT /product="coat protein; CP" XX SQ Sequence 5025 BP; 1574 A; 969 C; 1185 G; 1297 T; 0 other; cgcatcgggt acacagaaaa aggtttagtt gacatacctc aaacagttgc gactgaggca 60 gcatttctgt gttttgccta tgggttgcca gtcatgacac caaatgtgtc cacaagtctt 120 cttggttcgt gtaccgtcaa gcaggcgcga actatgctac aatttgagtt aactccattc 180 tacatggtga atatggttcg gtttgatgga tctatgcacc acgcaattca ccaactcctc 240 aaaaggtata agctcagaga tgcagaaaca acgctcaata agttggcaat tcccaacaga 300 gggataacag gatggatctc agcagcagat tacaggaaag tggggcaacg gttggatatt 360 gaagatcaag tcagaatacc cttttatcac caatcaatgc cagagaaatt gcatagtgat 420 atctgggaag caattcaaag atacaaacat gaagctggat tcggtcgcgt ttcatgtatc 480 aactcatgca aaattgccta cacacttcaa acagacgtgt atgctatccc ccgcactatc 540 aagatcctgg acgcactgat tgctgatgag atgaggaaaa aggagcacta caagacaata 600 acatatagaa ctgtttcaag cagtagtttt tctgttggtt caatcgcgac attgtggagg 660 aataggtacg cacaagatta cacaagtgag aacatagctg tactatcatc agccagagca 720 caactcctcg aatttgaaaa tttgagtatg gatgcctcat ataatgaaat gagcaaagga 780 attcttgaaa cgtacgtgcg tgagaatggt gccactactt gtgtattgca ccaaacaaag 840 agtgatctcg cgaggcatct acagctcaag ggcatttgga ataaatccgt gataacacaa 900 gatcttctgg tactagcagg agtttttgtt ggtggtatat ggatggtgtt ttcgggtgca 960 aaagaatctt ttgaacagac agttagacat caaggaaaag agaaaagaca aaggcaaaag 1020 ttgaagttcc ggcaggctcg tgataggaaa ctaggtttcg aggttcacgc agatgatggc 1080 acaattgaac attactttgg aagtgcttat actgcgaaag gaaaacagaa aggaaaggtt 1140 acgggtatgg gggcaaagaa taggaagttc ataaatatgt atggcttcga cccaactgaa 1200 tattcttttg tgagatttgt ggacccactg acaggattgg tgtttgatga ctcaccatac 1260 acagatattc aactggttca agaaaagatt ggtgatgcga gacataaggc aatacttgag 1320 gataagctct cccgagagag aatatcatac aatcctggaa ttagtgcata ttatatcaat 1380 gagattacaa atgcggcatt gaaggtagat ctcacaccac ataacccatt acttgcatgt 1440 gagagacata acacaatagc tggacaccca gatcacgagg gtgagttacg acagaccggc 1500 tccgttgtta aagttgatat tagagatgtg ccggagaacc cagaagaggt atcgcttgtg 1560 ggacatgaga gcaaatccct tttcaggggt ttgagggatt ataatccaat tgcaagtgta 1620 atatgccatt tagtgaatga agcagatggt aggacaagtg attcatatgg cattggatat 1680 ggtggtctaa ttattacgaa tagacatcta tttaagcgta ataatggaac tctcacaata 1740 cgctcgcgac atggggaatt cgtgattaag aataccactc aactgggcat gaaaccatgc 1800 gctgaccgcg acatattaat aataaagatg cccaaagata tcccaccttt tccacagaga 1860 cttcagttta ggattcctag ggagaatgag cgcatttgtc tagtgggttc gaacttccaa 1920 gacaaatcta tcacaagcac tgtctctgag acgagtgtca catgtcatgt accaaattca 1980 catttttgga agcattggat agatacaaaa gacggacatt gtggcttacc tcttgtaagc 2040 acagttgatg gtgcgattct tggggttcat agtttgtcaa atctcacaaa cacccaaaac 2100 ttctttgcag ccgtccccgc aaactttgag attgattacc ttaaaacacc tgaggctact 2160 gaatggatta agaagtggag ttacaaccct agcgaaatct gctgggggac tttggaactt 2220 aagacaggac aaccagttgc accttttaaa gtcaccaagt tgataacaga tcttgacagc 2280 atgcaagtgt atgctcaagc gcgctcggac aaatgggtgc tagataggtt gtatggaaaa 2340 ttgaaagctg tgttgctgtg tccagcacag cttgttacaa aacacgttgt gaagggaaag 2400 tgtatgctct ttgatttgta tctccaacaa gattgcgatg ttagaagctt tttcaagcct 2460 ttgatggggg catatgggaa gagtagatta aataaggaag catacaacaa ggatttattc 2520 aagtatgcaa ctccaatcaa tgcaggggaa gtgtgtcaca aaacgtttga gcaggcagaa 2580 ttagcagttg tcgagattct cagagcgaat ggtttccata agtgtaactc cattacagtt 2640 ccggaggaaa ttgtcaaggc actcaacatg aaagcagctg tcggagcaat gcagagtgga 2700 aagaacaaag cctattttga tgaaatgagc gacaaggata tcgaagatct tctttttcac 2760 agttgtaagc ggttgtacat ggggcagaaa ggactttgga atggctcctt aaaggctgag 2820 ctcagaccca tggcaaaagt tgaattgaac aaaacaagaa cttttacagc ggccccactt 2880 gacacacttt tgggtggtaa aacatgtgtt gatgatttca acaacatgtt ttacaacaac 2940 catctcaaat gcccatggac agtgggcatc acaaaattct atcaaggatg ggatagattg 3000 ttaacatctt tgcctgaaaa ttggatttat tgtgatgcag atggttctca atttgacagc 3060 tctttgtcac cctatcttat taatgctgtc ctcaatatac ggagggaatt catggaagaa 3120 tgggacatag gggaccaaat gctccgaaat ttgtacacag aaattgtata cacgccgatt 3180 ctaaccccag atggaaccat agtgaagaag ttcaaaggga ataacagtgg gcaaccatca 3240 accgtcgtgg acaatacact gatggttgtg ttggccgtct actacacttt gttgaaatta 3300 ggtgtttcag agttcgagat cagtaaacgt tgtgtattct ttgcaaatgg ggatgatcta 3360 ctgatagcta tgagaacaga tacagctcat cttttggata gcttcagtga gtgctttgct 3420 gagcttgggc ttaactacga cttctcatca aggacaacta agaaagagga attatggttc 3480 atgtctcact gtggaatcaa acgagatgga atgtacattc ccaaacttga gcctgaacga 3540 atagtatcta ttcttgaatg ggatagatca catgagcctg tacacagact tgaagcaatt 3600 tgtgctgcaa tggtggaagc gtggggctac gatgaacttc tccaccaaat tagaaaattt 3660 tatgcatggg tcttaggaca agcaccatac agtgaactag cacgaactgg aaaggcccca 3720 tatattgctg aaactgcact taaatcattg tacactggag tgcaacctag cgctgacgac 3780 ctcagcgagt acacgcgtgt tcttaacgag atgtatgatg atagccttct ccaagacaac 3840 gacttatcgg tgtatcatca atctggtaac ccctctgaat ttaaagatgc gggtgcaaac 3900 ccaccagcac caaaaccaaa agggccatat acagcaccag aaatcacaga ggttactgag 3960 ccggaggacc ccaaacaagc cgcgcttcgc gaagctagac agaaacaacc tgctgtcata 4020 cccgaatcat acggtaggga cacaggcgag aaacctatgc gctctgtttc accacaaagg 4080 gtaaaagata aggatgtcaa cgttggtaca acaggcacat ttgtggtgcc acgggttaag 4140 ctccatacta gcaaaatgcg gcaacctaga atcaatggaa tctctgtagt aaacttacaa 4200 cacctcgcaa cttatgaacc tgagcaacat aacattggga atacacgctc aactcaggaa 4260 cagttccgag catggtatga aggtgttaag ggtgattatg gtgttgatga tgctggaatg 4320 gcaatcttgt tgaatggatt gatggtatgg tgcatagaga atggaacatc tccaaatata 4380 aatggcgttt ggacgatgat ggatggggat gaacaagtga cgtaccccat aaagccatta 4440 ctggatcatg cagtgcctac ttttaggcaa atcatgacac acttcagtga cgttgctgaa 4500 gcgtatatag aaatgagaaa tcgcactaag gcatatatgc ccaggtatgg attacaacgt 4560 aacttgactg atatgagtct tgcgcgatat gcatttgatt tctatgagct gcactcaaca 4620 acacccgcac gtgctaaaga agcacacatg cagatgaaag cagctgcact taagaatgcg 4680 cataatcggt tgtttggttt ggatggaaac gtctccacgc aagaagagga tacggagagg 4740 cacactgcga ctgatgttac tagaaacata cataacctct taggaatgag gggtgtgcag 4800 taggtgaaac tttgcactgt atttatttac ttatgtggtt tttagtatgc ctttatttta 4860 attcgtgtcc ttcagtcccg acagagatgg ttgggtgtat cggcagagtg ggcttttagc 4920 ctggtctata cactcgagaa gtttctggtc tattacgtat cataagggac tcttaaaagt 4980 gaggagtacc tcgtaagaaa agcctttttg gttcgtgatc gagcc 5025 //