ID   FJ795746; SV 1; linear; genomic RNA; STD; VRL; 1814 BP.
XX
AC   FJ795746;
XX
DT   05-OCT-2010 (Rel. 106, Created)
DT   19-NOV-2010 (Rel. 106, Last updated, Version 2)
XX
DE   Sweet potato feathery mottle virus isolate SET3 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Sweet potato feathery mottle virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1814
RX   DOI; 10.1111/j.1365-294X.2010.04682.x.
RX   PUBMED; 20609081.
RA   Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.;
RT   "Molecular genetic analysis of virus isolates from wild and cultivated
RT   plants demonstrates that East Africa is a hotspot for the evolution and
RT   diversification of sweet potato feathery mottle virus";
RL   Mol. Ecol. 19(15):3139-3156(2010).
XX
RN   [2]
RP   1-1814
RA   Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.;
RT   ;
RL   Submitted (25-FEB-2009) to the INSDC.
RL   Department of Applied Biology, University of Helsinki, P.O. Box 27
RL   (Latokartanonkaari 7), Helsinki FIN-00014, Finland
XX
DR   MD5; 5adf0cbcdbbe38a21411d26b3387c9d7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1814
FT                   /organism="Sweet potato feathery mottle virus"
FT                   /host="Ipomoea setosa"
FT                   /isolate="SET3"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Mpigi"
FT                   /db_xref="taxon:12844"
FT   CDS             <1..1593
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:E1U7I8"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:E1U7I8"
FT                   /protein_id="ACY74478.1"
FT                   /translation="GNNSGQPSTVVDNTLLVVLAVHYTLLKLGIQESQFDKCCVFFANG
FT                   DDLLLAMRPDTAHLLDKFGECFSELGLNYDFSSRTNKKEDLWFMSHCGMKRNGIFIPKL
FT                   EPERIVSILEWDRSHEPIHRLEAICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELAR
FT                   NGKAPYIAETALKALYTGVQPNASELSAYTRVLKEMYDDSMLQESDLEVYHQSNERTEF
FT                   KDAGANPPAPKPKDIPPPPTITEITDPEDPKQAALKAARAKQPAVIPESYGRDTSKERE
FT                   SIVGTSSKGLKDKDVNVGTVGTFVVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQF
FT                   EVANTRSTQEQFQAWYEGVKGDYGVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDG
FT                   DEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLA
FT                   RYAFDFYELHSTTPARAKEAHLQMKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVT
FT                   RNIHNLLGMRGVQ"
FT   mat_peptide     <1..645
FT                   /product="nuclear inclusion body; NIb"
FT   mat_peptide     646..1590
FT                   /product="coat protein; CP"
XX
SQ   Sequence 1814 BP; 564 A; 337 C; 427 G; 486 T; 0 other;
     ggtaataata gtggtcagcc atctactgtg gttgataata cacttttggt tgtgttagca        60
     gttcactaca cattgctgaa actagggatc caagaaagcc agtttgataa gtgctgtgtc       120
     tttttcgcaa atggtgatga tttattattg gcaatgaggc cggatacagc ccatttactg       180
     gataagtttg gtgaatgttt ttctgaatta ggactcaatt atgacttttc atcacgcaca       240
     aataagaagg aagatctatg gtttatgtca cactgtggca tgaaacgtaa tggaatattt       300
     attccgaagt tggagcctga aaggattgtt tcaattcttg aatgggatcg ttcacacgag       360
     ccaattcatc gattggaagc aatatgtgcc gcgatggtgg aatcatgggg ttatgatgaa       420
     cttcttcatc atattaggaa attctatgca tgggttttgg accaagcccc atacaatgaa       480
     ctagcacgaa atgggaaggc accatacata gctgaaactg cactcaaagc actctatact       540
     ggtgttcaac ctaatgcttc tgaattgagt gcgtatacga gagtgctcaa agaaatgtat       600
     gatgacagta tgctccaaga gagtgatctg gaagtatatc atcaatctaa tgagcgcact       660
     gaatttaaag atgcaggagc gaaccctcca gcccctaagc ctaaggacat tcctccacca       720
     cccacaataa ctgaaatcac tgatccagag gacccgaagc aggcagcttt gaaagctgca       780
     cgagcaaagc aacccgcagt cattccagaa tcatatggac gagacacgag caaagaaagg       840
     gagtcgatag tgggaacatc atcaaagggt ttgaaggata aagatgtgaa tgttggtacc       900
     gtcggtacat ttgttgtgcc acgtgtcaag atgaatgcaa acaagaaaag gcaaccaatg       960
     gtcaatggaa gggccattat aaatttccag cacttgtcaa catatgaacc agagcagttt      1020
     gaggttgcaa acacccgttc gactcaagag caattccaag catggtatga gggagttaaa      1080
     ggggattacg gtgttgacga cacaggaatg gggatcttat taaatggact aatggtttgg      1140
     tgcattgaaa atggcacatc cccaaatata aatggtgtgt ggacaatgat ggacggtgat      1200
     gagcaagtga catacccaat taaaccatta ttggatcatg cagtgcctac ttttaggcag      1260
     attatgacgc acttcagtga cgttgctgaa gcctatatag aaatgcgaaa ccgtacaaag      1320
     gcgtacatgc caagatatgg tctacaacgt aatttgactg atatgagtct tgcgcgatat      1380
     gcatttgatt tttacgagct gcattcaact acacctgcac gtgctaaaga agcacattta      1440
     cagatgaaag cagctgcact taagaatgcg cgaaatcggt tgtttggttt agacggaaac      1500
     gtctccacgc aagaagaaga tacggagagg cacacgacaa ctgatgttac tagaaatata      1560
     cataacctct taggaatgag gggtgtgcaa taggacatcc tctgcactgt agcttatact      1620
     tatgttatct ttagtatgcc tttaatttaa attcgtgtct ttcagtcccg aaggagatgg      1680
     ttgaatgcat aacatggtgg gattatatct cggttattgc atttgagaag tcacctttct      1740
     attacgtatc ataagggact cttaaaagtg aggagtacct cgtaagaaaa gcctttttgg      1800
     ttcgtgatcg agcc                                                        1814
//