ID FJ790326; SV 1; circular; genomic DNA; STD; VRL; 2686 BP. XX AC FJ790326; XX DT 25-MAR-2009 (Rel. 100, Created) DT 25-MAR-2009 (Rel. 100, Last updated, Version 1) XX DE Corchorus golden mosaic virus [India:Barrackpore2:2009] segment A, complete DE sequence. XX KW . XX OS Corchorus golden mosaic virus [India:Barrackpore2:2009] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2686 RA Ghosh R., Das A., Palit P., Ghosh S.K., Roy A.; RT "Characterization of a begomovirus associated with yellow mosaic disease of RT Corchorus capsularis from India"; RL Unpublished. XX RN [2] RP 1-2686 RA Ghosh R., Das A., Palit P., Ghosh S.K., Roy A.; RT ; RL Submitted (26-FEB-2009) to the INSDC. RL Crop Protection, Central Research Institute for Jute and Allied Fibres, RL Barrackpore, Kolkata, West Bengal 700120, India XX DR MD5; de82c4ec2dc3fb88e6d01437557f18eb. DR EuropePMC; PMC3550811; 23730007. XX CC GenBank Accession Numbers FJ790326-FJ790327 represent the complete CC genome of Corchorus golden mosaic virus [India:Barrackpore2:2009]. XX FH Key Location/Qualifiers FH FT source 1..2686 FT /organism="Corchorus golden mosaic virus FT [India:Barrackpore2:2009]" FT /segment="A" FT /host="Corchorus capsularis (jute)" FT /isolate="Barrackpore-2" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="2009" FT /clone="JM-B2-36" FT /db_xref="taxon:627091" FT gene 228..974 FT /gene="AV1" FT CDS 228..974 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:C0LZK0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C0LZK0" FT /protein_id="ACN89268.1" FT /translation="MMKREAPWRTNAGTSKVRRSLNFSPRSGLGPKATAWVNRPMYRKP FT RIYRTYRSPDVPKGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCIK FT SVYILGKVWMDDNIKLKNHTNSVMFWLIRDRRPYGTPMDFGQVFNMYDNEPSTATIKND FT LRDRYQVLHRFASKVTGGQYASNEQSLVRRFWKVNNHVVYNHQEAAKYDNHTENALLLY FT MACTHASNPVYATLKIRIYFYDSILN" FT gene complement(971..1363) FT /gene="AC3" FT CDS complement(971..1363) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:C0LZK1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C0LZK1" FT /protein_id="ACN89269.1" FT /translation="MDLRTGDPITAYQAESSVFTWRVPNPLYFKIISATDLGARHLLLL FT QIRFNHNLRKALQLHKCYLNFRVWTTSRWRISSFCLVFSSRIRRYLDDLGAIGINNVIR FT AVAHAADTLVYVHVEEQNHIIKFNIY" FT gene complement(1101..1616) FT /gene="AC2" FT CDS complement(1101..1616) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:C0LZK2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C0LZK2" FT /protein_id="ACN89270.1" FT /translation="MEGFQQSSSAILGLLLHIKSTSRRKKIAPSMTGPKKTPSSSPSKS FT HSLIPPIKHRHRHSKKVIRRRRIDLDCGCSIYVSIHCRDDGFTHRGSHHCISGREFRFY FT LEGSKSPIFQDNIGNRSRCETPTITADKIQPQPQESTSAPQVLPEFQGLDDLQMEDFEF FT LSSIFFPN" FT gene complement(1420..2490) FT /gene="AC1" FT CDS complement(1420..2490) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:C0LZK3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C0LZK3" FT /protein_id="ACN89271.1" FT /translation="MSGRFRKQGVSFFLTWPKCPVTKESAIHQILALALPTNIIYIRVC FT EEKHQDGSPHLHALVQFQKKFVCTNCRLFDLSHPQNSRQFHCHIETARSSSDAKSYIEK FT DGVFCEWGTFQVDGRSARGGQQTINEAYAKALNSGSKDEALTVIKELVPKDYVCQFHNL FT NANLERIFAPPVHVFEPPFPLSSFNNVPAVINQWVNDNIMDAAARPFRPISIVIEGPSR FT TGKTLWARSLGRHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHMKEFMGAQRDWQS FT NCKYGKPIQINGGIPTIFLCNPGPTSSYKEYFEEEKNSAIYDWAKKNAIFVTIEEPFFD FT TADQASTSALEESNSS" FT gene complement(2037..2339) FT /gene="AC4" FT CDS complement(2037..2339) FT /codon_start=1 FT /gene="AC4" FT /product="regulatory protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C0LZK4" FT /protein_id="ACN89272.1" FT /translation="MGHLTCMPWFNSRRNSSAQIVDYSTSPIHRTHVNSTATLKLRAPP FT PTPNHISKKTECSANGALSRWTEDRREAVNRQLMRLMQRRLTAEVRTRLLLSLRS" XX SQ Sequence 2686 BP; 739 A; 529 C; 600 G; 818 T; 0 other; accgtgcagc agccaaaaat ttttccgtac actttaattt aaaataaaat tgaaattgat 60 tggcacttta ctttatttta gatctggcca atgatgaaac acgtgttggg tcattttaga 120 cgctttatcc ttatgacata agtttcaatt ttatttgaac tgtttagcgc tataaattta 180 aatttgaatg aaattcaagt actgtcagtg ttagagttcg aaaagaaatg atgaaacgtg 240 aggccccatg gcgtacgaat gctgggacct ccaaggtacg tcgttcttta aatttttcgc 300 cacgaagtgg attgggccct aaagctactg cttgggttaa tcggcccatg tataggaagc 360 ccaggattta tcgaacgtac agatcacctg atgttccaaa gggctgtgaa ggcccttgta 420 aggtacagtc atttgaacag cgtcacgaca tttctcatgt cgggaaggtg atgtgtatat 480 ccgatgtcac acgtggtaat ggtattacac atcgtgttgg taaacgtttc tgtattaagt 540 ctgtttatat tctaggtaaa gtatggatgg acgataatat taaacttaag aaccacacta 600 acagtgttat gttctggtta ataagggata ggagaccata tggtactccc atggattttg 660 gacaggtgtt taacatgtat gataacgagc ctagtaccgc tactatcaag aacgatctcc 720 gtgatcgtta ccaggttttg cataggtttg cgtcgaaggt tactggtgga cagtatgcta 780 gcaacgaaca gtctcttgtg agacgattct ggaaggtgaa caaccatgtg gtgtacaacc 840 atcaagaagc tgctaagtac gataatcaca ctgagaatgc attattattg tatatggcat 900 gtactcatgc atctaatcct gtgtatgcta cgttaaagat acggatctac ttctatgatt 960 cgatcttaaa ttaataaata ttgaatttta ttatatgatt ttgttcttca acatgtacat 1020 aaacgagcgt atcagcagca tgtgcaaccg ctctaattac attgtttatg ccaatggcac 1080 ctaaatcatc taagtaacgt ctaattcggg aagaaaatac tagacagaaa ctcgaaatcc 1140 tccatctgga ggtcgtccaa accctgaaat tcaggtagca cttgtggagc tgaagtgctt 1200 tcctgaggtt gtggttgaat cttatctgca gtaatagtag gtgtctcgca cctagatctg 1260 ttgccgatat tatcttgaaa tataggggat ttggaaccct ccaagtaaaa acggaactct 1320 ctgcctgata tgcagtgatg ggatcccctg tgcgtaaatc catcgtctcg gcagtggatg 1380 ctcacatata tggagcaacc gcagtccagg tcaattcgtc tacgacgaat tactttcttc 1440 gagtgccgat gtcgatgctt gatcggcggt atcaaagaat ggctcttcga tggtgacgaa 1500 gatggcgttt tttttggccc agtcatagat ggcgctattt ttttcctcct cgaagtactc 1560 tttatatgaa gaagtaggcc caggattgca gaggaagatt gttggaatcc ctccatttat 1620 ttgaattggt ttgccgtact tgcagttaga ctgccagtct ctctgggccc ccataaattc 1680 cttcatatgc tttagatagt gcgggtcgac gtcatcaatg acgttgtacc aggcttcatt 1740 ggagtagacc tttgggctta gatcaagatg gccacataga tagttgtgac gacccaaact 1800 tctggcccat aatgtctttc ctgtcctgga tgggccttca atgacaatag atatcggcct 1860 aaaaggccgc gcagcggcat ccattatatt atcgttaacc cactgattaa ttacagcagg 1920 aacgttatta aaggatgata gtgggaacgg tggctcaaaa acatgaactg gaggagcaaa 1980 gatcctctcc aaattggcgt taagattatg aaattgacat acataatctt ttggaactaa 2040 ctccttaatg acagtaagag cctcgtcctt acttccgctg ttaagcgcct ttgcataagc 2100 ctcattaatt gtctgttgac cgcctctcgc cgatcttccg tccacctgga aagtgcccca 2160 ttcgcagaac actccgtctt tttcgatata tgatttggcg tcggaggagg agcgcgcagt 2220 ttcaatgtgg cagtggaatt gacgtgagtt ctgtggatgg gagaggtcga ataatcgaca 2280 atttgtgcag acgaatttct tctggaattg aaccagggca tgcaagtgag gtgacccatc 2340 ttgatgtttt tcctcacata ccctaatata aatgatattt gttggaaggg ctaatgctaa 2400 tatttgatgt atggctgact ctttagtaac agggcatttt ggccacgtga ggaaaaaaga 2460 aacgccttgt ttcctaaaac gaccgctcat cttgcgtttt aaatcggaga caatcaaagt 2520 ctctgatatc caatatattg gagacaattt ataggtgttc caatatttgt actaagagcg 2580 tgcagagcct ttttatacgg acgcgaaggg cattttagtc atttcataaa atagtttagc 2640 gtgttttttg ggttccaatc ctctgctgct gcacgctccc attatt 2686 //