Dbfetch
ID FJ768020; SV 1; linear; genomic RNA; STD; VRL; 3966 BP. XX AC FJ768020; XX DT 02-MAR-2010 (Rel. 104, Created) DT 02-MAR-2010 (Rel. 104, Last updated, Version 1) XX DE Furcraea necrotic streak virus isolate Cauca, complete genome. XX KW . XX OS Furcraea necrotic streak virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Macanavirus. XX RN [1] RP 1-3966 RA Martinez A.K., Castano M., Lozano I., Morales F.J.; RT "Molecular Characterization of Furcraea Necrotic Streak Virus"; RL Unpublished. XX RN [2] RP 1-3966 RA Martinez A.K., Morales F.J.; RT ; RL Submitted (19-FEB-2009) to the INSDC. RL Virology Unit, International Center for Tropical Agriculture, Km. 17 Recta RL Cali-Palmira, Palmira, Colombia XX DR MD5; b5f56ce9c1310873a3986ffaff279fb2. XX FH Key Location/Qualifiers FH FT source 1..3966 FT /organism="Furcraea necrotic streak virus" FT /host="Furcraea" FT /isolate="Cauca" FT /mol_type="genomic RNA" FT /country="Colombia" FT /collection_date="Mar-2004" FT /db_xref="taxon:676234" FT 5'UTR 1..41 FT gene 42..2330 FT /gene="gp1" FT /note="FNSVgp1" FT CDS 42..2330 FT /codon_start=1 FT /transl_except=(pos:765..767,aa:OTHER) FT /gene="gp1" FT /product="polymerase-associated protein" FT /note="read-through stop codon" FT /db_xref="GOA:D3U5B4" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D3U5B4" FT /protein_id="ACW84407.1" FT /translation="MESLLKTVVPIAEERRSRAVQHTFLEKVGRLLLWVCDMGRNRDAI FT NTAALIEDAYQADVEHVDADEVEDCLEPEVTEDTKYRVSLDEATPVEIYDYQQKVWAGC FT TDPEIALERTIPAPPSRKRARRIKKNKGLRFIRVLVDAARAEFGLPKPTEANRLVVQGF FT MNRFCKEWGVCNSHTTHNVSLALPMVFIPRDEDIVARALLSTRFARQREREGRNAQGEG FT WFNNRFGIGGKAGIRFAPKXGCLDVRPGFSTSVSRGDHPDLVVLPSGRPEKQRLVFRYS FT GLGNDTLLAVHNNSLANLRRGLIERVFYVETPTGLAPPPQPQPGIFNHKLAGFSHAFHK FT HAGSHFPITRERFLMYYRGRKLAVYXNAVESLSLQPICKRDAKLKTFVKAEKINITRKP FT DPAPRVIQPRSPRYNVEVGRFLRPFEHKCFRYIEEVFGEPTVFKGYNMCQQGRLMRQKW FT DXYRDPVAIGLDASRFDQHVSEQALEWEHGMYLRCFRGDAVLKRLLRWQIDNVGVGFAN FT DGIIKYKKTGCRMSGDMNTSLGNCLIMCAMVKSLLEELNVKGSLANNGDDCVIICERKD FT VAGMINKIPSLFPRFWLYHGREKPVDIFEQIEFCQAKPVFDGENYIMVRDPRVALSKDL FT TCLLPLTKTAQFKEWFTAISTCGLALTGGIPIWQSFYRALDQKQKLTGFTLRTHFVESG FT IAYHSKTMHRKDRPVDPRARESFYLAYGVTPDLQEAVELWYDNIQMDFSDPVPRDTRQR FT IESSLLHGV" FT gene 42..767 FT /gene="gp2" FT /note="FNSVgp2" FT CDS 42..767 FT /codon_start=1 FT /gene="gp2" FT /product="polymerase-associated protein" FT /note="ORF1" FT /db_xref="GOA:D3U5B5" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:D3U5B5" FT /protein_id="ACW84408.1" FT /translation="MESLLKTVVPIAEERRSRAVQHTFLEKVGRLLLWVCDMGRNRDAI FT NTAALIEDAYQADVEHVDADEVEDCLEPEVTEDTKYRVSLDEATPVEIYDYQQKVWAGC FT TDPEIALERTIPAPPSRKRARRIKKNKGLRFIRVLVDAARAEFGLPKPTEANRLVVQGF FT MNRFCKEWGVCNSHTTHNVSLALPMVFIPRDEDIVARALLSTRFARQREREGRNAQGEG FT WFNNRFGIGGKAGIRFAPK" FT gene 2203..2523 FT /gene="gp3" FT /note="FNSVgp3" FT CDS 2203..2523 FT /codon_start=1 FT /gene="gp3" FT /product="movement protein" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:D3U5B6" FT /protein_id="ACW84409.1" FT /translation="MVSHQISRKLLSSGMTTYKWISVTRSPVIRANVSKALFYMEYNIQ FT SDGERVVRTRRPVKDRDNKLSGVKEQAVGQTSQKSHQGQGNGVMTNIAETQTITVTYNF FT NF" FT gene 2525..2695 FT /gene="gp4" FT /note="FNSVgp4" FT CDS 2525..2695 FT /codon_start=1 FT /gene="gp4" FT /product="movement protein" FT /note="ORF4" FT /db_xref="GOA:D3U5B7" FT /db_xref="UniProtKB/TrEMBL:D3U5B7" FT /protein_id="ACW84410.1" FT /translation="MKCRCCDNEPTLSPLFPFFAILVLVLAILVVGTPHVQYQSDQHHN FT ESKIQHITIGK" FT gene 2695..3729 FT /gene="gp5" FT /note="FNSVgp5" FT CDS 2695..3729 FT /codon_start=1 FT /gene="gp5" FT /product="coat protein" FT /note="ORF5" FT /db_xref="GOA:D3U5B8" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D3U5B8" FT /protein_id="ACW84411.1" FT /translation="MSSKKVKQRSGGLQPPPMKRDASSTKTPLKVTAPVAMSRLMVSRT FT PKFSSRSNNITVSHCELVANVTNTTGVLQINNAITSSIGGVYKVNPAQGLFAWLSTLAA FT NFDTYRFDKLIFRYVPMCATTETGRVVMMWDKDSEDPPPNDRFAISSYQHHCSFPCWGE FT GPLTIPVDGVKRFINDEAVVDRKLIDFGQFMFGVYGGSSTNSIGDIYVDYTVTLMEAQP FT TATLTFSTDGNSSVVANRNGPEIGQVFSSTNSITCKLYFAGTYLITIRAVTTATNPVFT FT ILGNCTQLGNLHGVSNGSEWVGYATVSCSGVRSLLDSFTVITLTALGIYQVYVARISPS FT QAGL" FT 3'UTR 3730..3966 XX SQ Sequence 3966 BP; 1059 A; 929 C; 1019 G; 953 T; 6 other; tatagtctag ccagctatac cacacaacca aagtgtataa aatggagtct ctgttaaaga 60 ctgtcgtccc tatcgctgag gaacgtcgat ccagggctgt tcaacatacc ttccttgaga 120 aggttggccg attattactg tgggtttgtg acatgggtcg caaccgagat gcgattaaca 180 ccgcagctct cattgaagac gcatatcagg cagatgttga acacgtggac gctgatgaag 240 tcgaggattg tttggaaccg gaggttactg aggataccaa ataccgggta tcccttgatg 300 aagccacccc ggttgaaata tacgactatc agcagaaagt ttgggcggga tgtactgatc 360 ctgagattgc actggagcga accattccag cgcctccatc taggaaacga gcccggagaa 420 tcaagaagaa caarggtctt cgattyatcc gtgtcctagt ggatgcagcg cgggccgaat 480 ttggactccc gaagcccacc gaagctaacc gcttggtggt acaggggttc atgaacaggt 540 tctgcaagga atggggggtt tgcaactctc acaccactca caatgtgtca ctggcactac 600 ccatggtttt cattcccagg gatgaagata tcgtggctag agcgctattg agcacccgtt 660 ttgccaggca acgtgagagg gagggtcgga atgcgcaggg tgagggctgg tttaacaacc 720 ggtttgggat tgggggtaaa gcgggtatcc gctttgcccc caaatagggg tgcctagatg 780 tcaggccagg gttctccacg agtgtttcac gtggagatca cccagacttg gtggtattgc 840 catcaggacg ccccgagaaa cagcggctgg ttttccgcta tagtggactg ggcaacgaca 900 ccctactcgc cgtccacaac aactcactcg ccaatcttag gagaggcctc attgagcgag 960 tgttttatgt ggagacgcca acaggattgg cgcctccccc tcagccccaa cccggcatat 1020 tcaatcataa attagccggg ttttcgcatg cttttcacaa acaygccggt tctcattttc 1080 ctataaccag ggagcgattc ctgatgtatt ataggggcag gaaactagct gtttatwcca 1140 atgcagtgga gagtctttcc ctccaaccta tctgcaaacg agatgcgaaa ttgaaaacgt 1200 ttgtaaaagc cgagaagatc aacatcacac gcaagccaga tccggctccg cgtgtgatcc 1260 aacctcgatc acctcggtat aacgttgaag tggggcggtt tcttcgtccg tttgaacaca 1320 aatgcttcag atacatagaa gaagttttcg gggaaccaac ggtgtttaag gggtataaca 1380 tgtgtcaaca agggaggtta atgcgccaga aatgggatck gtayagagat ccagttgcaa 1440 ttggtttgga cgcttcccgg tttgaccaac atgttagtga gcaagcttta gaatgggaac 1500 acggaatgta cctccggtgc tttcgcggtg atgcagttct aaagagattg ttgagatggc 1560 aaatagacaa cgtgggcgtg ggattcgcaa atgatggaat tattaaatac aagaagactg 1620 gatgtcgcat gtcaggagat atgaacacgt cattgggcaa ctgcttaata atgtgtgcca 1680 tggtgaaaag cctgctagag gaactaaatg tgaagggtag cctcgccaac aatggcgacg 1740 attgcgtgat catctgtgag aggaaggatg tggctgggat gatcaacaaa ataccctcat 1800 tatttcctag attttggctt taccatggtc gtgaaaagcc tgttgacatc tttgaacaaa 1860 tcgaattctg tcaagccaaa ccagtctttg atggtgaaaa ttacatcatg gttcgagacc 1920 cacgagtagc cctatccaag gatttgactt gtctattgcc cttaacaaaa accgcacaat 1980 tcaaagagtg gttcacagcc atatctacat gcggccttgc tctcacggga ggaatcccaa 2040 tctggcagag tttttatcga gcattggatc aaaagcaaaa actcaccgga ttcaccctac 2100 gaacccattt tgtggaaagc gggatagcct atcactccaa aacgatgcat cggaaggata 2160 gacccgtaga cccaagggcc agggaatcat tttatctcgc ctatggtgtc acaccagatc 2220 tccaggaagc tgttgagctc tggtatgaca acatacaaat ggatttcagt gacccggtcc 2280 cccgtgatac gcgccaacgt atcgaaagct ctcttctaca tggagtataa cattcaaagc 2340 gacggagaac gtgttgtgcg tactcgaaga cctgtaaagg atcgagacaa caagctgagt 2400 ggcgtgaagg aacaagccgt gggacaaaca tcccagaaat cgcaccaggg tcagggtaat 2460 ggtgttatga caaacatcgc tgaaacccaa accattacgg tgacctacaa tttcaacttt 2520 tgagatgaag tgtcggtgct gtgataacga gccaacgttg tcacccttgt ttcccttctt 2580 tgccattctg gtcttggtgt tagcaatact ggtagttggg actccccacg tgcagtacca 2640 gtccgatcag caccacaacg agtctaagat acagcacatc acaataggaa agtaatgtcg 2700 tcaaagaaag taaagcaacg gagcggtggg ctgcaaccac ccccgatgaa acgagatgcc 2760 agctccacca aaaccccact gaaagtgact gctccggtag ccatgagtag gttgatggtg 2820 agtcgcactc ctaagttcag cagtcgaagt aacaacatca cagtttcaca ctgtgaattg 2880 gttgctaatg ttaccaatac cacaggcgta ttgcaaatca acaatgcaat aaccagtagt 2940 ataggtggag tctacaaagt caatcccgct caggggttgt ttgcgtggct ctctacgtta 3000 gcagctaact tcgacactta tcggtttgat aagctgatct ttcggtatgt gccgatgtgt 3060 gctacgactg aaacagggcg ggtcgtgatg atgtgggata aggattccga ggatccccca 3120 ccaaatgatc gattcgccat ctccagttac cagcaccact gctcctttcc ctgttgggga 3180 gaggggccac tcactatccc agtagatggg gttaaacgct tcatcaatga tgaagctgtt 3240 gtggaccgca aactgattga cttcggtcaa ttcatgtttg gggtctatgg tggaagttca 3300 acaaacagta taggagacat ttatgtcgac tatactgtaa cactgatgga ggcgcaacct 3360 acagcgactc tcacattcag cacagatgga aatagttccg tagtggccaa tcggaatggc 3420 cccgaaattg gacaagtgtt ttcgagcaca aattcaatca cgtgcaaatt gtattttgca 3480 ggaacttatc tcatcaccat ccgagcggtt accacagcaa ccaatcctgt atttaccatc 3540 cttggtaatt gcacccagct gggaaatctg cacggagtgt cgaatggatc ggaatgggtt 3600 gggtacgcta cagtctcctg ttcaggagta cgaagcttac tagattcatt taccgtcatc 3660 acgttgactg cattaggcat ttatcaggtc tacgtggcta ggatctctcc tagccaggct 3720 ggtctatagc tgctttcttt gatgggcggt ctggcgagtc ctaaatggcg aaccctttga 3780 ccctaagcgc accataggcc ccgagaacgg gtttaccggg ctggtgtggc aaccagccga 3840 cgtccatggt tgtttagcgc ttggagtcag tgtcgtcaca gggaccgttg caggtcgagg 3900 caccccctag atctctaccg aaaggtagag tgagggcggg aggtgtacca agtcacgtgg 3960 acgctg 3966 //