Dbfetch
ID FJ751235; SV 1; circular; genomic DNA; STD; VRL; 2779 BP. XX AC FJ751235; XX DT 13-MAR-2011 (Rel. 108, Created) DT 29-AUG-2012 (Rel. 113, Last updated, Version 2) XX DE African cassava mosaic virus-cotton clone ACMV-Gos1, complete genome. XX KW . XX OS African cassava mosaic virus-cotton OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2779 RX PUBMED; 22899988. RA Nawaz-Ul-Rehman M.S., Briddon R.W., Fauquet C.M.; RT "A melting pot of old world begomoviruses and their satellites infecting a RT collection of gossypium species in pakistan"; RL PLoS One 7(8):E40050-E40050(2012). XX RN [2] RP 1-2779 RA Khan M., Fauquet C.; RT "African cassava mosaic virus DNA-A component infects non-cultivated exotic RT cotton species in Pakistan"; RL Unpublished. XX RN [3] RP 1-2779 RA Khan M., Fauquet C.; RT ; RL Submitted (13-FEB-2009) to the INSDC. RL ILTAB, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis, RL MO 63132, USA XX DR MD5; e2580c8b6d8b0dfa1b386b6cde1ca6b9. XX FH Key Location/Qualifiers FH FT source 1..2779 FT /organism="African cassava mosaic virus-cotton" FT /host="Gossypium gossypioides" FT /lab_host="Nicotiana benthemaina" FT /mol_type="genomic DNA" FT /country="Pakistan" FT /collected_by="Muhammad Shah Nawaz Khan" FT /collection_date="Mar-2008" FT /clone="ACMV-Gos1" FT /db_xref="taxon:685973" FT gene 136..477 FT /gene="AV2" FT CDS 136..477 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:F0UXM0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:F0UXM0" FT /protein_id="ACZ74640.1" FT /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRDL FT VSVIRARNYVEATRRYHHFHSRLQGSSKAELRQPIQEPCYCPHCPRHKSKTGLDEQAHV FT QKAHDVQDV" FT gene 296..1072 FT /gene="CP" FT CDS 296..1072 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="AV1" FT /db_xref="GOA:F0UXM1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:F0UXM1" FT /protein_id="ACZ74639.1" FT /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRAW FT MNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTH FT RVGKRFCIKSVYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNTPQDFGQIFNMFDN FT EPSTATIKNDLRDRFQVLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQEAGKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN" FT gene complement(1069..1473) FT /gene="REn" FT CDS complement(1069..1473) FT /codon_start=1 FT /gene="REn" FT /product="replication enhancer protein" FT /note="AC3" FT /db_xref="GOA:F0UXM2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F0UXM2" FT /protein_id="ACZ74642.1" FT /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQDI FT ITVQVRFNHNLRKELGIHKCFLNFRIWTTLQPQTGLFLRVFRYQVLKYLDNIGVISINH FT VIRAADHVLFNVIEKTIACQLTHEIKFNIY" FT gene complement(1214..1621) FT /gene="TrAP" FT CDS complement(1214..1621) FT /codon_start=1 FT /gene="TrAP" FT /product="transcriptional activator protein" FT /note="AC2" FT /db_xref="GOA:F0UXL7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F0UXL7" FT /protein_id="ACZ74641.1" FT /translation="MQSSSPSQNHSTQVPIKVSHRQFKKRAIRRRRVDLVCGCSYYLHI FT NCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNNQAPTTTIPAEPGHHNSPGSIQSQ FT PAEGAGDSQMFSQLQDLDDLTASDWSFLKGL" FT gene complement(1530..2606) FT /gene="Rep" FT misc_feature complement(1530..2606) FT /gene="Rep" FT /note="nonfunctional replication-associated protein due to FT mutation; AC1" FT gene complement(2114..2452) FT /gene="AC4" FT CDS complement(2114..2452) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:F0UXN0" FT /protein_id="ACZ74643.1" FT /translation="MGNLTCMPSSNSRAKSRLRTIVSSIVYTQAVAPVSTPTFKVPNQA FT QMSSHTWIRTATPSNGDDFRSMDDLLEEVNSPQMMLTPKRLTAAVSQKLLMSLGNSSQR FT TLYFSFII" XX SQ Sequence 2779 BP; 742 A; 560 C; 685 G; 792 T; 0 other; accggttggc cccgcccccc tttaaacgtg gtccccgcgc actatgtatg tcggccaatc 60 atgtcgtagc gttaaaggtt atttattagt ggtgggccac tatatacttg caggcgaagt 120 cgttgctagt gcgcaatgtg ggatccactg gtgaatgagt ttcctgactc ggtgcatggg 180 cttaggtgta tgcttgcaat taaatatttg caggccttag aggatacata cgagcccagt 240 actctgggcc acgatctggt tagagattta gtctcagtta tcagggctcg taattatgtc 300 gaagcgacca ggagatatca tcatttccac tccaggctcc aaggttcgtc gaaggctgaa 360 cttcgacagc ccatacagga accgtgctac tgcccccact gtccacgtca caaatcgaaa 420 acgggcctgg atgaacaggc ccatgtacag aaagcccatg atgtacagga tgtatagaag 480 cccagacata cccaggggct gtgaaggccc atgtaaggtc cagtcgtttg agcagaggga 540 tgatgttaag caccttggta tctgtaaggt gattagtgat gtgacacgtg ggcctgggct 600 gacacacagg gtcggaaaga ggttttgtat caagtccgtt tacattcttg gtaagatctg 660 gatggatgaa aatattaaga agcagaatca cactaataat gtgatgtttt acctgcttag 720 ggatagaagg ccttatggca atacgcccca agactttggg cagatattta acatgtttga 780 taatgagccc agtactgcaa caattaagaa cgatttgagg gataggtttc aggtgttgag 840 gaaatttcat gccactgtta ttggtggtcc atctggcatg aaggagcagg ctttggtgaa 900 aaggttttac aggttgaatc atcacgtgac atataatcat caggaggcag ggaagtatga 960 gaatcacaca gaaaatgcgt tgcttttgta catggcatgt actcatgcct ccaatcctgt 1020 atatgctacg ttgaaaatac gtatatactt ctatgacagt attggcaatt aataaatatt 1080 gaattttatt tcatgagtca actgacacgc aatagttttt tcaattacat tgaacaaaac 1140 atgatcagca gctctaatta catggttaat tgagataaca cctatattat ccaagtattt 1200 aagtacttgg tatctaaaga cccttaagaa aagaccagtc tgaggctgta aggtcgtcca 1260 gatcctgaag ttgagaaaac atttgtgaat ccccagctcc ttccgcaggt tgtgattgaa 1320 tcgaacctgg actgttatga tgtcctggtt cagcaggaat ggtcgttgtt ggtgcctggt 1380 tattgtgaaa tacaggggat tgtttatttc ccaggtatac acgccattca ttgcttgagg 1440 agcagtgatg agttcccctg tgcgtaaatc catgattgga gcagttgata tggaggtaat 1500 atgaacagcc acagacaaga tccactctcc tacgccggat ggctcgcttc ttgaattgtc 1560 tgtgactgac tttgattgga acctgagtag agtggttctg tgagggtgat gaagattgca 1620 ttctttaatg cccaggcctt tagcgcttct tgcttttcct cgtctaggaa ctctttatag 1680 gacgaggttg gtcctggatt gcagaggaag atagtgggaa tgccaccttt aatttgaacg 1740 ggtttcccgt attttgtgtt ggactgccag tcccgctggg accccaggaa ttccttaaag 1800 tgctttaggt agtgtggatc gacgtcatca atgacgttgt accaagcagc attattgaag 1860 acctttggac taaggtccag gtgtccacac aggtaattgt gtgggcctaa agatctggcc 1920 catatcgtct tccctgttct gctatcacct tctatgacaa tactattggg tctccatggc 1980 cgcgcagcgg aagccctaac attatcagcg acccattctt caagttcatc aggaacttgg 2040 tcagaggaag aacatgggaa gggagaaata taaggagctg gtggctcctg gaaaatcctt 2100 tctaaattac tatttagatt atgaaactga agtacaaagt cctttgggac gaattcccta 2160 atgacattaa gagcttctga cttactgccg ctgttaagcg ctttggcgta agcatcattt 2220 gcggactgtt gacctcctct agcagatcgt ccatcgatct gaaatcgtcc ccattcgacg 2280 gtgtcgccgt ccttatccag gtatgacttg acatctgagc ttgattcggc accttgaatg 2340 ttggggtgga aactggtgct acagcttggg tgtagacaat cgaagagacg attgttcgta 2400 atcgtgattt tgccctcgaa ttggatgagg gcatgcaagt gaggttcccc attctgatgc 2460 agctctctac agattttaat gaacttaggg ttagatggga gagagtgttt gaatgaatga 2520 cagcaggtgt tctttgggga tagaacactt tgggtatgtg agaaagacat tcttggcttg 2580 aactctaaaa cgaggagtcc tcattttgac caagtcaatt ggagacactc aactagagac 2640 actcttgagc atctcctcct gttaattgga gacattatat aggtgtctct aaatggcatt 2700 cttgtaataa gttaaacttt aatttgaatg aaaagcctca aaaggcgcat aacacccaag 2760 gggccaaccg tataatatt 2779 //