ID FJ712027; SV 1; linear; genomic RNA; STD; VRL; 3985 BP. XX AC FJ712027; XX DT 09-SEP-2009 (Rel. 102, Created) DT 20-NOV-2009 (Rel. 102, Last updated, Version 2) XX DE Turnip ringspot virus isolate Toledo segment RNA 2, complete sequence. XX KW . XX OS Turnip ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus; OC unclassified Comovirus. XX RN [1] RP 1-3985 RX DOI; 10.1007/s00705-009-0523-5. RX PUBMED; 19838619. RA Khandekar S., He J., Leisner S.; RT "Complete nucleotide sequence of the Toledo isolate of turnip ringspot RT virus"; RL Arch. Virol. 154(12):1917-1922(2009). XX RN [2] RP 1-3985 RA Khandekar S., He J., Leisner S.; RT ; RL Submitted (05-FEB-2009) to the INSDC. RL Biological Sciences, University of Toledo, 2801 West Bancroft Street, RL Toledo, OH 43606, USA XX DR MD5; b5b2fe1703969a9ac2474324108886ee. XX FH Key Location/Qualifiers FH FT source 1..3985 FT /organism="Turnip ringspot virus" FT /segment="RNA 2" FT /isolate="Toledo" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:392504" FT CDS 419..3706 FT /codon_start=1 FT /product="polyprotein" FT /note="encodes movement protein, large coat protein, and FT small coat protein" FT /db_xref="GOA:C7SW01" FT /db_xref="InterPro:IPR003181" FT /db_xref="InterPro:IPR003182" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C7SW01" FT /protein_id="ACV41392.1" FT /translation="MNNIKGRHHCIDNLIPQFAGEPARDFSDKPQEKYVKFLKVSPFSF FT LCFLIVCHIVTYCETVFKVCFYFNSWTGTKLRDWLLSITRDANVEYKRLEAISSWSAGH FT QVVIQHSFSAKKMETVMERGIAAKALELRNDSAMNKGKRFVGLKDHIPAGKDLYVHKQK FT LFEMLKGSKRSREVDISRIKGCEVVEMKHIDVGTLSPGENQIINVKIVKDDMLPQPVQS FT DYAMVTHSNESKYANAMHVGAIEVIFNSYASPTSDIVGGMILVDTCHKSVANAVRSVFV FT TGLAGGKLIRVLMYPNTLVEIGPKMNDRFKLVCTTSNSDISEGFNLASVKVNVVGCTQS FT LMTQYVPQPLLDNLLNKEQGTVVEYLGQLSYVMHHSNHITEEFLANQTMEFDLGKKLQL FT TPSGSGASLAKSTSMRYVVGPKQRLLNAEEDDGASSFDKRRDAARKIVGMRADATYVDP FT VFGMTQRAFGQASTTQSLLNKFANTRQMEGTPIETKIARTKIILTKVMAGGNILYTERL FT SDVLSNVEQRAAIAFQRTHVQHKKLVALATINVPENTGCALMMCYNSGIRGKAVVDAYT FT ASAEASTIWNPACQQQARLEINVNPCKSAWSYQFLRQSKGVFNVVCISGWTTTPSTDLS FT LTIDWYLSDKDAEPETYCAVGINPKIVLNRWMGKLSFPQGTDVTLRRMPLAIGGGAGGT FT GLVYMNMPNALCSLWRYMRGGMSFEVIKLSSPYIKATIAFFIAFTDVDATVPNLEAYPH FT KLVQFSEIQERVTISFDKEDFVMAWSTQVHNSVPLSEDGCPYLYAVVHDSVGSTISGDF FT NIGVVLKEMNEVESIGRHPGWKGARPLAVSPQGLRKSPSGVWNELFMVRGPPEAKSTDV FT VQFAIDLVGVGIATKNPGAWSIETNNSPMNNLMRTATWKSGTFHFQVLMEGNPLIKRGD FT WSSYCEVSLTQSTKVSTMSSRNWVMKDPSSWELEFDIKIEGPNDGFENWESHFSNQTSW FT FLVFSVFNPDQSTVFVVNGMIDDDCWFAGNTLMPPFLEPGSVSSRHSFLSSVQFDYGTT FT PSRRAPSSPADNEDDDGRRSERIRQLERYRERDDQNRGNLATYMRRS" XX SQ Sequence 3985 BP; 1176 A; 726 C; 911 G; 1172 T; 0 other; tattaaaatt ttactaagat tttaataaac cgcaatcagg actgagtccg ccccttttct 60 tttgttacta gaaaaagcaa tcaggcctga gcgccgccgg ttactatttg ttttccaatt 120 caaacaggaa gttgaagttt caaaatttct ccgtatttct tgtagcattg gaattgataa 180 acaagttcac tagaaggtag gtgctggttt ttcaaccggt cagactacca cacacttcgg 240 tgctgttgga caaatttatt tgaaggtagg tgctggtttt tcaaccggtc agactaccaa 300 gtattcaagt ctttgaagac ttgctgtatt gctgtgcctc gatagagaat atcagatatt 360 acgcaaacac ctttggttgt cacgcgtgga aatgcgccat taaattatat tttcacgaat 420 gaataacata aagggacgtc atcattgtat tgataactta ataccacaat ttgcaggaga 480 acccgcacga gatttttcag ataaaccaca agagaaatac gtcaaatttc ttaaagtatc 540 ccctttttct tttttgtgtt ttcttatagt ttgccatata gtaacatatt gtgaaacagt 600 gtttaaagtt tgtttttatt tcaatagttg gactggtact aagcttcgtg attggctctt 660 gtcaataact cgtgacgcaa acgttgaata taagcggttg gaagcaatta gcagttggtc 720 agctggtcat caagttgtta tacaacattc cttctctgcc aaaaagatgg aaacggttat 780 ggaaagaggt attgctgcaa aagctcttga actgcgaaat gattctgcca tgaacaaagg 840 aaaacgcttt gttggcctta aagatcacat acctgctggt aaggatttgt atgtacacaa 900 acaaaagttg tttgaaatgc tgaaaggtag caaaaggagt cgtgaagtag atatcagtcg 960 cattaaagga tgtgaggttg tcgagatgaa acacatagat gttggcacat tgtcccctgg 1020 tgagaatcag attatcaatg ttaaaattgt aaaggatgat atgctacctc agcccgtgca 1080 gagtgattat gccatggtga cacattccaa tgaatcaaaa tatgctaatg caatgcatgt 1140 cggggctatc gaagtcattt tcaacagcta tgcatcacct acaagtgata tagttggagg 1200 tatgattttg gtggacactt gtcataagag cgttgctaat gctgtaagga gtgtctttgt 1260 tacagggttg gcaggtggaa agttgatcag agtgctgatg tatccaaata cacttgttga 1320 aataggtcct aagatgaatg atagattcaa gcttgtatgc actacttcaa acagtgacat 1380 tagtgaggga tttaatcttg cttctgttaa ggttaacgtt gttgggtgta cccaaagctt 1440 gatgacacaa tatgttcctc aaccactatt ggacaattta ctcaacaagg agcaaggaac 1500 cgtcgtggag tacctaggac aattgtcata cgtcatgcac cattcaaatc acatcacgga 1560 ggaattttta gcaaatcaga ccatggaatt tgatcttgga aagaagctac agctcactcc 1620 cagtggttct ggagcaagtc ttgccaaaag cacatcaatg cgctatgtgg taggacccaa 1680 acagagatta ctcaatgctg aagaagatga tggagcctca agttttgata agcgcagaga 1740 tgcagcgcgt aagattgttg gaatgagggc tgatgcaacg tatgttgacc cggtttttgg 1800 gatgacgcaa cgagcctttg gtcaagcgag caccacccaa tcgttgttaa acaaatttgc 1860 caatacacgg cagatggaag gaacaccaat tgagaccaag attgctagaa ccaagataat 1920 cttgaccaag gttatggctg gtggcaatat cttgtacact gagcgcctaa gtgatgttct 1980 ttccaacgtt gaacaacgag ctgctattgc ttttcagcgg acgcatgtcc aacataagaa 2040 actcgtagcg ctggccacta tcaatgtgcc tgaaaacaca ggttgtgctc tgatgatgtg 2100 ttacaacagt ggtatccgag gtaaagcagt tgtcgacgcc tatacagctt cagctgaagc 2160 tagtaccata tggaatccag cgtgtcaaca acaagcgcgt ttagagataa atgtgaatcc 2220 atgtaagagt gcctggagct accaattttt acgacagtct aaaggagtgt tcaacgtagt 2280 ttgcatatca ggctggacta caacaccatc aacagacctt tcacttacaa tagattggta 2340 tcttagtgat aaggatgcag aaccagaaac atattgtgct gttgggatca atcccaagat 2400 tgttcttaat cgctggatgg gaaagctttc ctttccacaa ggcacggatg tcacactgcg 2460 tagaatgcca cttgccatag gtggaggtgc cggaggaaca ggactggtat acatgaacat 2520 gcccaatgct ttgtgctctt tgtggagata tatgcgtggc ggaatgtcct ttgaagtcat 2580 taaattgagt tctccctaca tcaaggccac catagcattt tttattgcgt ttacagacgt 2640 cgatgccacg gtcccaaatc tagaagcata tcctcacaag ttggttcagt tttcggaaat 2700 acaagagagg gtaactatat cctttgataa ggaagatttt gtgatggcgt ggtccacaca 2760 agtgcacaac agcgttcctc tgtccgaaga tggttgtcct tatttgtatg ctgtggttca 2820 cgacagtgtt ggctcgacaa tatctggaga tttcaatatt ggtgtagtgc ttaaagagat 2880 gaatgaggtt gaatccatag gaagacatcc tggctggaaa ggagcacggc cattggcagt 2940 aagcccacag ggtttacgga agagtccctc tggtgtttgg aatgaattgt ttatggttag 3000 aggacctcca gaagccaaat cgactgatgt tgttcagttt gcgatagatc ttgttggagt 3060 tgggatagcg acaaaaaatc caggagcatg gtccatagaa acaaacaaca gcccaatgaa 3120 caaccttatg cggacagcaa cctggaagag cgggactttc cactttcaag tgctaatgga 3180 agggaatcct cttatcaaga gaggagattg gtcttcatat tgcgaggttt ccctgacaca 3240 gagtactaag gtttccacca tgtcaagtag aaattgggtc atgaaagatc cttcatcgtg 3300 ggagttagaa ttcgacatta aaattgaagg ccctaatgat ggatttgaaa actgggaatc 3360 acactttagt aatcagacaa gttggtttct tgtcttctcg gttttcaacc cagaccaatc 3420 aactgttttt gtggtgaatg gaatgataga tgatgattgt tggtttgctg gcaatactct 3480 gatgccacca tttcttgaac cgggaagtgt cagtagtagg cactcatttt tgtcatcagt 3540 tcaatttgac tatggaacta cgccaagtag aagggcacct tcttctccag cagacaatga 3600 agatgatgat gggaggaggt cagaaaggat ccgacagctg gaaagatata gagaaagaga 3660 tgatcaaaat cgaggaaatc tggcaactta catgcgacgc tcttgattta taatagccat 3720 agattaagtt taaatgtatt acgtttgtat tttattctct tttttaagtt tcctatgttg 3780 ttttaaatta aatatctgta taattagtag atgtaaatct gctttgtgcg tttgacagtc 3840 tgtggaaacg cactggttca tgagatagga ccacctagga ggtaggactc tgggttttaa 3900 ttatctcatt tcttagttat accgtattat atatatgatt tagtagtaat tgttttctct 3960 tgatatgtat tattactttt ttatt 3985 //