ID FJ712026; SV 1; linear; genomic RNA; STD; VRL; 6082 BP. XX AC FJ712026; XX DT 09-SEP-2009 (Rel. 102, Created) DT 20-NOV-2009 (Rel. 102, Last updated, Version 2) XX DE Turnip ringspot virus isolate Toledo segment RNA 1, complete sequence. XX KW . XX OS Turnip ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus; OC unclassified Comovirus. XX RN [1] RP 1-6082 RX DOI; 10.1007/s00705-009-0523-5. RX PUBMED; 19838619. RA Khandekar S., He J., Leisner S.; RT "Complete nucleotide sequence of the Toledo isolate of turnip ringspot RT virus"; RL Arch. Virol. 154(12):1917-1922(2009). XX RN [2] RP 1-6082 RA Khandekar S., He J., Leisner S.; RT ; RL Submitted (05-FEB-2009) to the INSDC. RL Biological Sciences, University of Toledo, 2801 West Bancroft Street, RL Toledo, OH 43606, USA XX DR MD5; d7d8531df42c98f51f00bec461558e20. DR EuropePMC; PMC3583878; 23460860. XX FH Key Location/Qualifiers FH FT source 1..6082 FT /organism="Turnip ringspot virus" FT /segment="RNA 1" FT /isolate="Toledo" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:392504" FT CDS 318..5900 FT /codon_start=1 FT /product="polyprotein" FT /note="encodes protease cofactor, helicase, VPg, protease, FT and RNA-dependent RNA polymerase" FT /db_xref="GOA:C7SW00" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:C7SW00" FT /protein_id="ACV41391.1" FT /translation="MACLTLHKEQSSYALIPHFMSSDVRWLLRCYTHVNTFLPEFPVTT FT RLARLRDKHFDLLCLGYGAYLTHRNAMAVEPLEICQADFIFEDFHQFLCEKVSGNGGIS FT HFRTYINVCFGTYFGELIEFSALVLDESEDQDFDLQGLRDCISSVASYIPLQVSVAVEW FT TTDRIIDGIKKRFQAVVAEWCPMAMQACSWLANIWDKVKEWVEEAIKTMTWFLEGAREL FT FYYGVSILTASCAIGIVEKILVATGMIGANCGLVQAFLSSAVLTGGLLSFTKKGQFKDA FT TTMVSLVSVMAGVIASTVSALFGAPAVVAFQGPVELLEGAAAALSVFCDTTLLSMGKTC FT QAVNQINTCAGNLKAIVGKIFTMLQDFVWKIFGMESRFLRDASLMFEEDVDQWLKDIAE FT CEDTYLEKAYASQDDIMKMQCLIKKGHDMRSKVLKVTSRISPVLANTVTRGVEAIEKLM FT RTSLCQGIRASRKIPFVVYAYGASRTGKTLVVDKLISDFQEHFGLGKNTVYSRNPIDQY FT WSGYRRQPIVNIDDFGAVACDPSMEAQMIPLVSSSPMPLTMAAVEEKGLMFDSKFIFCS FT SNLLEASPESKVHDNQAFRNRRHVLIHVTLDEEKEYNMHDFTANQKYKILKYDKGTYVV FT QNEFTSYGDLLTFCLTKWEEHEAEQTANLAKKLEEPALIGDFRSFEVMFSGMILKSVDG FT RIKEHSDEKTGRKFYDFVSFRRKDKLWHFTVDSNGKANMWSEKIPSEELSEKELVSQDI FT LRRCYEMLRFNEDTNLIIRMHLKDLAREDFYDDKMRFIGKFGNEHIQAQMQPTLDNMLD FT WHKIVLCGMGAMQDRRSPTKWYEGLVDKIKDAMYTVYSKEIAEWPLGLKIVVGVLISSL FT MGSGLWGLMSVLQGAGNTAALGVAAATGFSKYSKEDIAVAQSRKPNRYDVAQYKYRNVP FT ITKRAWAQGVMPLEHATAMIFDKIKASMQYGRTEVQIAIAPGRRFIGYTHFFRNITTPI FT RVRINTATGSRHLFYKPENMKYFEDSELCVYEDNTLEDLPGTSWDLFCWDFEKVQQTSF FT KALFLSCKRKAATGLPNPEWADIDVRTKTESLMINEGDYARVLPRFLEYMAPTVNYDCG FT SLIVAEVEGTYKVVGIHVAGSGGTKGYACFLPPLVRKAQAQHAQQYFDYLAFEEREGDG FT IARIATLKKGIHIPVPTKTSLVETPAEMHLDTPCDKYPSILSNTDPRLEVSGVTDYDPF FT KAGILKYQNPMGELDQDLLQEVCDEIEETWRDCQEEFETFEEVSLEEAINGIKGMEYME FT RIPMATSEGFPHILTRSHGEKGKIRFVEGDGEDLTLLPNTSVTEALDIMEEHLEHEVPT FT LIGIECPKDEKLPYRKIFEKPKTRCFSILPMEYNLLVRRRFLKFVRFIMKRRDILPCQV FT GINPYGMEWTDLAARLKSKGNNVLCCDYSSFDGLLSKQVMAAMASMINSFCGGDTSIKR FT KRENLLMACCSRYAICKSDVWRVECGIPSGFPLTVICNSIFNEILIRYSFKAIMRKQKV FT PGLISISFDKYVGMVTYGDDNLLSVSEVVKPYFDGKRLKEFLAKHKVVITDGKDKTSPY FT LLFRRLEDCDFLKRGFRKDKNGIFWNAPEEKESLWAQLHYINVTNLEQHEAYKTNLVNV FT LRELYMWDVNECSALRKKALQRVEWLVPSDLPTVAQIEEWYATCRGRYMPDSADSINFL FT LDQEHLGPLLAPQGVQRGVRLTDQVRTVNLAHENHTTRKPGELWILCQTLYPHSMLPEG FT VRAINWPLGTGRGGLPTTSWVEENVKRPTSEIRKTISAALKRGEQIVFATRDNILPCNM FT LAVLFLVIEGSIKVETSNMIISAVIQQCKTLGYLVRECDFAFFAT" XX SQ Sequence 6082 BP; 1774 A; 1063 C; 1473 G; 1772 T; 0 other; tattaaaatt ttaataaaat tttgataaac cgcaatcagg actgagttcc gcccgttact 60 aaagttgcag agaaatttca aacatttgtt gtttttaaat tcctactctg tcccctttta 120 taatttcaac gcgtggatac gttcatcgaa gataggtgct ggtttttcaa ccggtcagac 180 tatcattgga tactgtttac tttgtgagca tattttatct tttgctgtgc ctttgatttg 240 aatcaaagaa tatcagaaat tagtgtaaac tcttctgtta gtgtgtgggt gctacaagct 300 ttgctttatt aaataatatg gcttgtttaa ctttacataa ggagcagagc agttatgctt 360 tgatacctca ttttatgagc agtgatgtaa ggtggttgtt gcgttgctat acacacgtca 420 ataccttcct ccctgagttt ccagttacaa ccagattggc ccgattgcga gataagcact 480 ttgacttact ttgtttgggc tatggtgctt atttgacaca tcgtaatgct atggcagttg 540 aaccgttgga gatatgccag gcagatttta tatttgaaga ttttcatcag tttctgtgtg 600 agaaagtttc tggaaatgga ggaatttccc acttccgaac ttacatcaat gtttgctttg 660 gtacatattt tggagaactg atagagttca gtgcacttgt gcttgatgag agcgaggatc 720 aagattttga tttacaagga ctacgtgatt gcataagcag cgtagcttct tacatacctc 780 tccaagtttc ggttgctgtt gagtggacca ctgataggat cattgatggc attaagaaga 840 gattccaggc cgttgttgca gaatggtgcc ctatggcaat gcaggcatgt tcatggcttg 900 caaacatatg ggacaaggtt aaggaatggg ttgaagaggc cattaaaacg atgacctggt 960 ttctcgaagg agcaagggag ttgttttatt acggtgtttc tattcttaca gcaagctgtg 1020 ctataggcat agtggagaag atactggtgg caactggtat gataggagca aattgtggac 1080 tagtccaagc attcttgtca agtgcagtgt taacaggagg actgttgtca ttcacgaaga 1140 aagggcaatt taaagatgct acgacaatgg tttcgttggt ttcagttatg gcaggagtaa 1200 ttgcctcaac agtgtcagct ctttttggag caccggctgt agtggccttt caaggtcctg 1260 tcgagctttt agaaggcgct gctgctgcat tgagtgtttt ttgtgatact acccttcttt 1320 ctatgggcaa aacgtgtcag gcagtcaatc agatcaatac atgcgctggc aatttaaaag 1380 caatagttgg aaaaattttc acaatgcttc aggatttcgt ttggaagatt tttggtatgg 1440 agtctcgttt tctgcgagac gcttccttaa tgtttgagga agatgttgat caatggttga 1500 aagacattgc agagtgtgaa gatacatacc ttgagaaagc atacgcatca caagatgata 1560 tcatgaaaat gcaatgtctc ataaagaaag gtcatgatat gcgttccaag gtgcttaagg 1620 ttacaagcag gatttctcct gttcttgcaa acacagttac gcggggtgta gaggccatcg 1680 agaagctgat gagaactagc ttatgtcaag ggatacgagc ttcacgcaag attccatttg 1740 ttgtttatgc gtatggagct tccagaactg gtaagacatt ggtggtcgac aagctgattt 1800 cagatttcca ggagcacttt ggcttgggaa agaacactgt ttacagtaga aatcctattg 1860 atcaatactg gagtggttat cgcagacaac caattgtgaa cattgatgat tttggagcag 1920 ttgcatgtga tccttccatg gaagctcaga tgatacctct tgtttcaagc tcaccgatgc 1980 ccttaacaat ggcggcagtt gaagaaaaag gactaatgtt tgattccaag ttcatctttt 2040 gctcatccaa tttattggaa gcaagtccag aaagtaaagt ccatgataat caggccttca 2100 ggaacaggag acatgttcta atacacgtta cccttgatga ggagaaggag tacaacatgc 2160 atgattttac tgcgaaccaa aagtacaaga ttctcaagta tgacaaagga acatatgtcg 2220 tgcagaatga atttacttct tatggagatc tgttgacctt ttgtcttacc aaatgggaag 2280 agcatgaagc agagcaaact gcgaatctag ctaagaagtt ggaagaacct gcactcattg 2340 gtgacttcag aagctttgag gttatgtttt caggcatgat tttgaagagc gttgatggta 2400 ggatcaaaga gcatagtgac gaaaaaacag gaagaaagtt ttacgatttt gtcagctttc 2460 gacgtaaaga caagttatgg catttcacag tagattcaaa tggcaaagcg aatatgtggt 2520 ccgagaaaat acccagcgaa gaactgtcag agaaagagct tgtctcacaa gatatcttgc 2580 gccgatgtta cgaaatgctt cgtttcaacg aagacaccaa cctgataatt agaatgcatc 2640 tcaaggatct tgcacgagag gatttttatg atgacaagat gcgctttatt ggcaagtttg 2700 gaaatgaaca cattcaagct cagatgcagc caacactaga taacatgtta gactggcaca 2760 agattgtttt gtgtggtatg ggtgctatgc aagatagaag atcacctacc aaatggtatg 2820 agggcctagt tgacaaaatt aaggatgcta tgtacaccgt ttacagcaag gaaattgcag 2880 aatggccttt gggtctcaaa attgttgtgg gcgtgttgat ttcatcactt atgggctctg 2940 gactctgggg tctgatgagt gttttgcaag gagcaggaaa tactgcagct ctcggagttg 3000 ctgcggctac agggttcagc aaatacagca aagaggacat tgcagtggca cagagccgaa 3060 aaccgaacag atatgatgtt gctcagtaca agtacaggaa tgttcctata actaagcgag 3120 cttgggccca gggagtgatg cctcttgagc atgctacggc aatgatattt gacaaaatca 3180 aggcaagtat gcaatatggt cgcacagagg tgcagattgc tattgcacca gggaggcgct 3240 tcattggcta cacgcatttc tttcgaaaca ttactacacc aatacgtgtc agaataaaca 3300 cagctacagg ctcaagacat cttttctaca aaccagagaa catgaagtac tttgaagaca 3360 gtgaactatg tgtttatgag gacaacacgc tggaagattt gccaggcacg agctgggatc 3420 tgttttgctg ggattttgag aaggtacagc agacctcttt caaggcactc tttttgtcat 3480 gtaagagaaa ggcagctaca ggcttaccca atcctgaatg ggcagacatt gatgttagaa 3540 ccaagacaga atctttgatg ataaatgaag gtgattatgc acgtgtgctg cccagatttt 3600 tggaatatat ggctcctact gttaactacg attgtggatc actgatagtt gctgaagttg 3660 agggaaccta taaggttgtt ggcatacatg ttgctggatc aggaggaaca aaaggctacg 3720 cttgtttttt accaccactt gttagaaaag cacaagctca acatgctcaa cagtactttg 3780 attaccttgc ttttgaggaa agagagggtg atggcatagc caggatcgcc actctgaaga 3840 aaggcattca tatccctgtt ccaaccaaaa cgtctctcgt ggaaacgcca gctgaaatgc 3900 acctggacac accttgtgac aaatatccca gtattttatc taacacagat cctcgtcttg 3960 aggtttctgg cgtgacagat tatgatcctt ttaaagcagg cattttgaag taccagaacc 4020 caatgggaga actagatcag gatttgcttc aggaagtatg tgatgaaata gaggaaacat 4080 ggagagattg ccaggaggag tttgaaacgt tcgaggaagt gagtttggaa gaagctatca 4140 atggaatcaa aggaatggaa tacatggaac gaatcccgat ggcaacgtct gagggctttc 4200 cacatatctt aacgagatct catggagaga aagggaaaat ccgattcgtt gaaggtgatg 4260 gtgaagactt gactttgttg ccaaacacta gtgtgacgga agcactggac atcatggaag 4320 agcatctgga gcatgaagtg ccaactttga ttgggataga atgtcccaaa gatgagaaat 4380 tgccatacag aaagattttt gagaagccta aaacacgttg tttttctata cttccgatgg 4440 agtacaatct tttggtacga cgccgtttcc taaagtttgt tagattcatt atgaagagaa 4500 gagacatttt gccgtgccag gttggtataa atccgtatgg aatggaatgg acagatttgg 4560 ctgcacgctt gaagagcaag ggtaataatg tgctttgctg tgattacagt agttttgatg 4620 gtctattgtc taaacaagtt atggcggcta tggctagcat gataaactcc ttttgtggag 4680 gagacacaag tatcaaaaga aaacgagaaa atttgttgat ggcatgttgt tctcgctatg 4740 ccatttgcaa gtctgatgtc tggcgtgttg aatgtgggat accatctggg tttccactca 4800 ctgtgatatg taattccatc ttcaatgaaa ttctcatacg ctacagtttc aaagctatta 4860 tgcgcaagca gaaagttcca ggccttattt caataagctt tgacaagtat gttggaatgg 4920 ttacatatgg ggatgacaac ttgctttctg tgagtgaagt tgttaaaccc tattttgatg 4980 gaaagaggct gaaggagttt ttggcaaagc ataaggttgt gattacagat gggaaagaca 5040 agaccagtcc ttacttactt tttcgcaggc tagaagattg tgactttttg aagcgaggtt 5100 tcaggaagga taagaatggc atcttttgga atgctcctga agagaaagag agtttgtggg 5160 cacagttgca ttatataaat gttaccaatt tagagcaaca tgaggcctat aaaacaaatt 5220 tggtgaatgt gctacgtgag ctgtatatgt gggatgttaa tgagtgttct gctcttagga 5280 agaaagctct acaacgtgtg gagtggctgg tgccatcaga tctccctaca gttgcccaaa 5340 tagaagagtg gtatgctaca tgtcgaggaa gatatatgcc agattcagcg gattctatca 5400 acttcctctt agaccaggaa cacttagggc ctttgttggc accacagggt gtacagagag 5460 gagtgcgttt aactgaccaa gtccgtactg ttaatcttgc acatgagaac cacaccacac 5520 gaaaaccagg agagttgtgg atactgtgtc aaacgctata tccccatagc atgcttcctg 5580 aaggagttag agcgatcaac tggccacttg gcacaggtag gggaggattg cccaccacat 5640 cttgggtgga agaaaatgtc aagcgtccga cttcggaaat caggaaaacc ataagtgcag 5700 ccctcaaaag aggagaacag attgtttttg caacgcgtga caacattctg ccatgtaata 5760 tgctagctgt tttgttttta gtcattgaag gtagcataaa ggttgaaaca agcaacatga 5820 tcatttcagc ggtcattcag cagtgtaaaa ctttaggata tttagttaga gagtgtgatt 5880 ttgctttctt tgcaacatag atttagtttt acgtctgctt tgtgtgtttg acagtctgtg 5940 gaaacacact ggttcatgag acaggaccac ctaggaggta ggactctggg tttagttgtc 6000 tcttttgttg tttgactatt ctaaaataag taattttgta ataattagtt tcttagttga 6060 tatatattat tactttttta tt 6082 //