Dbfetch
ID FJ685651; SV 1; circular; genomic DNA; STD; VRL; 7048 BP. XX AC FJ685651; XX DT 13-APR-2009 (Rel. 100, Created) DT 10-MAY-2009 (Rel. 100, Last updated, Version 2) XX DE Halorubrum pleomorphic virus 1, complete genome. XX KW . XX OS Halorubrum pleomorphic virus 1 OC Viruses; Pleolipoviridae; Alphapleolipovirus. XX RN [1] RP 1-7048 RX DOI; 10.1111/j.1365-2958.2009.06642.x. RX PUBMED; 19298373. RA Pietila M.K., Roine E., Paulin L., Kalkkinen N., Bamford D.H.; RT "An ssDNA virus infecting archaea: a new lineage of viruses with a membrane RT envelope"; RL Mol. Microbiol. 72(2):307-319(2009). XX RN [2] RP 1-7048 RA Pietila M.K., Roine E., Paulin L., Kalkkinen N., Bamford D.H.; RT ; RL Submitted (28-JAN-2009) to the INSDC. RL Institute of Biotechnology/Dept. of Biological and Environmental Sciences, RL University of Helsinki, P.O. Box 56 (Viikinkaari 5), Helsinki 00014, RL Finland XX DR MD5; 80f54c6652d681bd0ed7a30bef104716. DR EuropePMC; PMC3347350; 22357279. DR EuropePMC; PMC3384331; 22396526. DR EuropePMC; PMC5801132; 29175107. XX FH Key Location/Qualifiers FH FT source 1..7048 FT /organism="Halorubrum pleomorphic virus 1" FT /host="Halorubrum sp. PV6" FT /mol_type="genomic DNA" FT /country="Italy" FT /collection_date="Jun-2006" FT /db_xref="taxon:634168" FT CDS 1..1503 FT /codon_start=1 FT /product="ORF1" FT /db_xref="GOA:C1JJY0" FT /db_xref="InterPro:IPR010995" FT /db_xref="UniProtKB/Swiss-Prot:C1JJY0" FT /protein_id="ACO54896.1" FT /translation="MSHNDTPANNTNGIADVYADENPCEIAGEDNPPQPYSCFDGEDRA FT HDKTRIIKWLCYHPKGVPLARTVKALFPDDSEKRISERSYTSTDYNFVSRFLERTGYAV FT LDSEAGLIEASPTSRAFHLTLESKIPSEHTTNYAKDRAEACAYGMWSLNDVENARLLAK FT DFTTYLESIHDRRLMLENVDNPDMKLTMPYHTRFNDDRRKAEQWARYNSAWEAADDKYS FT SGVMVTLTTDPKRYDSIGEMLDGLMDAWQNLHETLNQRYLEGTRLDFIRALEFGGSEKS FT NHIGLPHLHVCVFGVPYIDHRWLKHYWSSKHAEIVHIHGMNKRGNDSWIMTSGTHAGKS FT VAGYLGKYLSKTFERIADDPDELREHYQSWSEGGDWANSELWKLALYWATGRQFWASSH FT DLKDDSRNFDTLQEVPGLGETKLDRLEAHGIQTLSDVRLASVDEIASIDGISESFAEKL FT KDLVGEPSEFDVFRFEFRGAARYEEMPASWSHARHLGVSACG" FT CDS 1579..1959 FT /codon_start=1 FT /product="ORF2" FT /db_xref="UniProtKB/Swiss-Prot:C1JJY1" FT /protein_id="ACO54897.1" FT /translation="MSKSKTPNFDDMEVLDDTNDEYDDSESEWIDLDRGESVVGEIREI FT NPDCGDYGTTVLELSRGLGDNVCMWSNRQIDNKIEQHGLGVGEVVGIKHTDREQTFTPD FT GSDEPVKFDVYEVRAVNVGGND" FT CDS 1959..2357 FT /codon_start=1 FT /product="VP3" FT /db_xref="GOA:C1JJY2" FT /db_xref="UniProtKB/Swiss-Prot:C1JJY2" FT /protein_id="ACO54898.1" FT /translation="MAYSKGVSGTLSDYTHLRTLPALLSVVFVIAGLYQFGGISDVTIT FT WLSNYTLTSTHAMGASIGAYALAFASSETKQFDNYQDFEKVLIAAGPAVILGYEYIQPV FT TDLINTTSNAGPIAAFVVTVVAWGVAVR" FT CDS 2363..3919 FT /codon_start=1 FT /product="VP4 precursor" FT /db_xref="GOA:C1JJY3" FT /db_xref="UniProtKB/Swiss-Prot:C1JJY3" FT /protein_id="ACO54899.1" FT /translation="MSVNRSSIKSLLMVFMIVSSSLLAPVGGAAADEFRTPAASDTSPE FT AGECSNLDDFIMFLSVGRINADSCSRQAYVDAAVQDMKDSDANQTKVDIYSAAAGVKGG FT SETWAAPYDNYLNDTESIAWMKAESAIAQSYSEGESKTEAKVAAKAAIADYYATKQKNL FT IEQWNFANAQMFTLREQARMEDGISRNYVEPAYRNVEKTNSPDYSLAYSNTTVEKSLVD FT GTTVNTTGVSMDVTVQHTTVSDVATVSSGPVRAGKYNNQYNEWKATYYSWSVEPASPSQ FT DTLYAVHFQPYADRWQRIVDMNGALQSEADNFVNATWDDYDTGQINASDVLSANTAMSE FT YGVRSGSESEGLWRSTAALSMMGYDTPNLNNSGMMTVEYKNVQHTGLLMAKNAPNGSWQ FT VNTTYNTSNIDGPVFMATTEGTKLDFADGEEFTIVGMTAKDGTAVNSTQTTKYRYKTAN FT TTELLEVQNQLIELRQEIEDREPEAGGFFGSGSTDTMLVGLLALAGVLLLAQSNNRGGR FT R" FT sig_peptide 2363..2455 FT mat_peptide 2456..3916 FT /product="VP4" FT CDS 3921..4094 FT /codon_start=1 FT /product="ORF5" FT /db_xref="UniProtKB/Swiss-Prot:C1JJY4" FT /protein_id="ACO54900.1" FT /translation="MIQSLLLDLLPIRSFVMLALVVVGLQLVGVDVIGPAIDMARNFML FT DTFSVSDLGSLV" FT CDS 4127..4672 FT /codon_start=1 FT /product="ORF6" FT /db_xref="UniProtKB/Swiss-Prot:C1JJY5" FT /protein_id="ACO54901.1" FT /translation="MNKKSLLVVLVIALAVVPFAATAQTTPGQNQTAPNSSSPTVISQV FT DSITAITDYELRDGDLWIQFQSSGGNTLSITETAGSEGATQVRVRSVDIPRGTSTVTID FT LFNSADGSVLITSRLSLEQNSGTVVSVSGGSAIISGPFTASDAQASGLGAAISVASVTL FT LLVFRASRGESTEGERIA" FT CDS 4669..5481 FT /codon_start=1 FT /product="ORF7" FT /db_xref="UniProtKB/Swiss-Prot:C1JJY6" FT /protein_id="ACO54902.1" FT /translation="MTQLEGPENPDRIGALILFARRWSLEIIGLLLIGIAGMLFLELQP FT TIPRFWQVSFLAAVFASPIAYYTGSTVVRWLYDPKWLYLIDLSAAEEKGSLYRLPESQF FT RDLEVLDGQLDRLAPGLYVGKRVDLENNRVAGTWRGTLSDRDLLLSLRKVRECRGQLEE FT DARQGFILRSSAYTVVRRAVRDTTMQVVKTFERGSLPDSGEAMNNAIHSELEEFGITDN FT LEETIEDLAEEKLADSDLEADSDDSESFEFVENPEPSENGSEPTIKND" FT CDS 5402..6433 FT /codon_start=1 FT /product="VP8" FT /note="putative ATPase" FT /db_xref="GOA:C1JJY7" FT /db_xref="UniProtKB/Swiss-Prot:C1JJY7" FT /protein_id="ACO54903.1" FT /translation="MIQNPSSSSRILNPPKTVPSPLSKMTDENLLTSAKLREQIEGRID FT SHSRHYQFTGLADEADRGSLALLSDALHQEGKDLEETQLGSVLMDRLVTDRATEAVQSG FT DSSMMSHIVGVTEQDLDASSLTLPARLLDLLDNNGALTTVLAAGDPNSGKTNTVWLLTE FT LARSKWDDVMVISNARASAVDLRVTSCHDLACALLRHKDRPKVVVIDEGSTHFDARTNS FT YEVASQWSPLLKRMSKLGVEIAAVIGHTGKDVDPELKRLTSLGLYKPDQTTLEVYSEWP FT ADSDMPTDLLFGGPLENLEATSVEYDPDEPAPWAWNLRAGLFSKDLEWSALLDELQDLG FT PDS" FT CDS 6605..6976 FT /codon_start=1 FT /product="ORF9" FT /db_xref="UniProtKB/Swiss-Prot:C1JJY8" FT /protein_id="ACO54904.1" FT /translation="MGGGGPPARVQGTEGSQTGGGAVAVSYHPNNLDTKPLSCLPILSN FT FLLISSNSSLTSSTSSPLLMSSRYASAVEIPSSSAYSSTNSIVASLSRIDTTSFELLMV FT SRLRSSTPGKPFCSVPSVA" XX SQ Sequence 7048 BP; 1583 A; 2051 C; 1768 G; 1646 T; 0 other; atgtcacaca acgatacccc cgcaaataac actaacggca tagccgacgt ttacgctgac 60 gagaatccat gtgaaatagc cggggaagat aaccccccac aaccatactc ctgcttcgac 120 ggcgaagatc gggcgcacga taagactcga atcatcaaat ggctctgtta ccaccctaaa 180 ggcgtccctc tggcccgtac tgtcaaggcg ctattccctg atgactccga aaaacgcatt 240 tccgaacggt cctacacctc caccgattac aacttcgtct ctcgctttct cgaacgaacc 300 ggatatgcgg tcttagactc tgaggccggg cttatcgagg cctccccaac aagccgggcg 360 tttcacttga cgctagaaag taaaattcca agtgagcata ccaccaacta cgcaaaagac 420 cgcgctgagg cctgtgccta cggaatgtgg tcgttaaacg acgtagaaaa cgcgcgtctc 480 ctggcaaaag atttcactac gtacctcgag tcgatccacg accgtcgttt gatgctcgaa 540 aatgtcgata atcctgatat gaagctcacc atgccgtacc acactcgctt taacgacgat 600 cgccgcaagg ccgagcagtg ggcgcggtac aactctgcgt gggaagccgc cgacgacaaa 660 tactcgagcg gcgttatggt gactctcacg actgacccaa agcggtacga ctcgatcggc 720 gagatgctag atggcctgat ggatgcctgg caaaatcttc acgaaacact aaatcagcga 780 tacttagagg gcacaagact cgacttcatc cgtgcgctcg agttcggtgg ttccgaaaaa 840 tcaaatcata tcggcttgcc tcacttgcac gtctgcgttt tcggcgttcc ctacattgat 900 caccgctggc tcaaacatta ctggtcgtcc aaacacgcgg agatcgtcca catccacggg 960 atgaataaac gcggcaacga ctcgtggatt atgacctccg gtactcatgc cgggaaaagc 1020 gttgctggct acttaggcaa atacctctct aagactttcg agcgtattgc cgatgaccct 1080 gacgagctgc gcgaacatta ccagtcgtgg tctgaaggtg gcgactgggc taactctgag 1140 ctatggaaac tcgcccttta ctgggccact ggccgccaat tttgggcttc atctcacgac 1200 ctcaaagatg actctcgcaa tttcgataca cttcaagagg tccccggtct cggcgaaact 1260 aagctagatc gcctcgaggc gcatgggatt caaaccctct ctgatgttcg cctcgcctct 1320 gtcgatgaga ttgcttccat tgacggtata tccgagtcct tcgctgaaaa actcaaagac 1380 ctcgtaggtg aaccctccga gttcgacgta ttccgtttcg agtttcgtgg agctgcacgt 1440 tacgaagaga tgcctgcgtc gtggtctcat gcgcgtcacc tgggcgtctc tgcctgtgga 1500 tagctgcata tacacttgta aactataaat tatcctaagt taatactaag taccccacgt 1560 ttacataagt aaacgctgat gtcgaaaagc aaaactccga acttcgacga catggaggta 1620 ttggacgata caaatgacga atacgatgac tcggaatccg agtggatcga cctcgatcgt 1680 ggtgaaagcg tagtcggtga aatccgcgaa atcaatcccg actgtggcga ctacggtacg 1740 accgtgcttg agctgtctcg aggcctcggc gataacgtgt gtatgtggtc gaaccggcag 1800 atagacaaca aaatcgaaca acacggtctc ggcgtcggcg aagttgtcgg tatcaaacac 1860 actgatagag aacagacctt cacgcctgac ggctctgatg agcccgtcaa gttcgacgtg 1920 tacgaagtcc gtgctgtcaa tgtcggaggt aatgactgat ggcatactcg aaaggcgtga 1980 gtggtactct ctccgattac actcacctgc gcacccttcc cgcgctgctg tctgtcgtgt 2040 ttgtcatcgc tggtctctac cagttcggtg gcatttctga cgtaacgatt acgtggctga 2100 gtaactatac gctgacttca actcacgcga tgggcgcttc aatcggtgcg tacgctctcg 2160 cgttcgccag ctccgagacg aagcagttcg acaactacca agacttcgag aaggtgctga 2220 ttgcagctgg ccccgctgtc atcctcggct acgaatacat ccaacctgtc actgacctca 2280 tcaacacgac ctccaacgct ggcccgatcg ccgcgttcgt cgttactgtc gtggcgtggg 2340 gcgtggcggt tcggtgataa aaatgtctgt gaatcgctcg tcgattaaat cgctgctgat 2400 ggtctttatg atcgtctcgt cgagtctgct cgctccggtc ggcggagcag ccgccgacga 2460 gttccgaact cccgccgcat cggacacgtc gcccgaggct ggcgagtgtt ccaacctcga 2520 cgacttcatc atgttcctgt cggtcggcag gattaacgca gattcctgct cgcggcaggc 2580 atacgtagat gccgccgtgc aagacatgaa ggattctgat gccaaccaaa cgaaggttga 2640 catctactct gctgctgctg gtgtcaaagg tgggtctgag acttgggctg cgccctacga 2700 caactacctg aatgacaccg aaagtatcgc gtggatgaag gctgaatcgg ctatcgctca 2760 atcctactcg gaaggtgaat caaaaactga ggcaaaagta gcggctaagg cggccatagc 2820 cgactactac gccaccaagc agaaaaacct catcgagcaa tggaacttcg caaatgctca 2880 aatgttcacg ctccgcgagc aggctcggat ggaggatggt atatcacgta actacgtcga 2940 gcctgcttac cgcaacgtgg agaaaactaa cagtcccgat tacagtctag catactccaa 3000 cacgaccgta gaaaagtctc tcgtggacgg tactacggta aacacgactg gcgtgtccat 3060 ggacgttacg gtgcaacata ctactgtgtc ggatgttgca acggttagta gcggccctgt 3120 ccgtgctgga aagtataata accaatacaa cgaatggaag gctacgtact actcgtggag 3180 tgtcgagccc gcgtctccga gtcaagatac tctgtatgcc gtgcattttc agccttacgc 3240 tgaccgctgg cagcggatcg ttgatatgaa tggtgcgctt cagtctgagg ctgacaactt 3300 cgttaacgcg acgtgggacg actacgacac cggccaaatc aacgcctctg acgtgctgtc 3360 ggctaacacg gccatgtccg aatacggcgt ccgctcgggc agcgagtctg agggtctgtg 3420 gcgctctact gctgcgttgt ccatgatggg ctacgacacg cctaacttga acaacagcgg 3480 catgatgact gtcgaataca agaacgtcca acacaccggc ctgctgatgg cgaagaacgc 3540 gccgaatggc tcgtggcagg tcaacacgac ctacaacacg tcgaacatcg acggcccggt 3600 cttcatggcg acgaccgagg gaaccaaact cgacttcgct gacggcgaag agttcaccat 3660 cgttggcatg accgctaaag acggtactgc cgtcaattcc acccaaacta ccaaataccg 3720 ctacaaaacc gcaaacacga ctgaactgct cgaagtccaa aaccagttga tcgaactccg 3780 gcaggagatc gaggaccgcg agcccgaggc tggtggcttc ttcggcagcg gctcgaccga 3840 cacgatgctc gtcggcctgc tcgctctcgc tggtgtcctc ctgctcgccc agtccaataa 3900 tcgaggtggt cgccgttgag atgatacaat cacttcttct cgacctcctg ccaatacgct 3960 cgtttgtcat gttggcgttg gttgtcgtgg gcttgcagct cgtgggtgtt gatgtgatcg 4020 gccccgcgat cgacatggcc cgtaatttca tgttggacac tttcagcgtg tccgacctcg 4080 gcagtctggt gtaaccagcg gggttcgatt ccccgcctgc ctctcgatga acaaaaaaag 4140 tctgctagtc gtgcttgtga tcgctctcgc tgtcgtcccc ttcgcggcga ccgcgcaaac 4200 tacaccaggg caaaatcaaa ccgctcccaa ctcctcgagt ccgaccgtca tatctcaagt 4260 tgactctatt actgctatca ctgactacga gttgagagac ggcgatctct ggattcagtt 4320 tcaaagctcc ggtggaaata cgctgagtat taccgaaact gctggctccg agggcgcgac 4380 tcaagttcgt gtccggtctg tcgatattcc tcgaggcacg tctacggtca ctattgacct 4440 cttcaactct gctgatgggt ccgtcctaat cacgagtcgc ctatccctcg agcaaaactc 4500 tggtactgtt gtctccgtgt ctggtggctc tgccataatc tctggtccct tcaccgcgtc 4560 cgatgctcaa gcttctggcc tcggagctgc aatatcagtt gcctcggtaa cgttgctgct 4620 cgtgttccgc gcgtctcgag gcgagtctac tgagggggag cgtatcgcat gactcaacta 4680 gaaggccccg agaatcctga ccgaattgga gctctgattt tatttgctcg tcgatggtct 4740 ctcgagatta tcggcctgct tctgatcgga atcgccggaa tgctgttcct cgagctgcaa 4800 ccaactatcc ctcgcttctg gcaagtgtcg ttcctcgctg ctgtgtttgc ctctcctatc 4860 gcctactaca ctggatcgac tgtcgttcgc tggctatacg atccaaaatg gctctacctg 4920 atcgacctct ctgctgctga agagaaaggc tccctgtacc gcctgcctga atctcaattc 4980 cgcgacctcg aggttcttga tggtcaactc gaccgactcg ctcccggtct ctatgtcggt 5040 aagagggtag acctcgagaa caatcgagtc gccggtacat ggcgcggtac tctctccgat 5100 cgtgatctcc tcctatctct ccgtaaagtg cgtgagtgtc gtggtcaact tgaggaagat 5160 gctcgtcaag gcttcatcct tcgctcgagc gcgtacaccg tggtccgtcg cgccgtccga 5220 gacactacta tgcaggttgt caagaccttc gagcgtggct ccctgcctga ctctggagag 5280 gcgatgaata acgcgattca ttccgagctc gaagagttcg gcataactga caatcttgaa 5340 gagacaatcg aggacctcgc tgaagagaag ctagccgact ccgacctcga ggccgattct 5400 gatgattcag aatccttcga gttcgtcgag aatcctgaac cctccgaaaa cggttccgag 5460 cccactatca aaaatgactg atgaaaacct actgacctcc gcgaaactcc gcgagcagat 5520 tgaaggccgt atcgactctc atagtcgcca ttaccaattc actggtctgg ctgacgaggc 5580 tgatcgtggt tcgctcgccc ttctttccga cgcgctccac caggagggca aagacctcga 5640 ggaaactcaa cttggttccg tactgatgga tcgactcgta actgaccgtg cgaccgaggc 5700 cgtccaatct ggcgactcgt cgatgatgag ccacatcgtt ggcgtcactg agcaggacct 5760 cgatgcctcg agcttgactc tccctgctcg actcctcgat ctcctcgata acaatggtgc 5820 gctcactact gtcctagctg ctggcgaccc caactcgggc aaaacaaata cggtctggct 5880 cctcactgag ctggcccggt ccaaatggga cgatgttatg gttatcagta acgcccgcgc 5940 gtctgctgtt gacctccgag taaccagctg tcacgacctc gcgtgtgccc tcctccgtca 6000 caaagaccgg cctaaagttg tcgttatcga cgaaggttcg acccatttcg atgctcgaac 6060 caactcatac gaggtggcct ctcagtggtc tcctctgcta aaacggatgt ctaaacttgg 6120 cgtcgaaatt gctgctgtaa ttggtcacac tggaaaagat gttgaccctg agctaaagcg 6180 tctcacctcc ctcggtctct ataagccgga ccaaacaact ctcgaggtgt attctgaatg 6240 gcctgctgac tctgatatgc cgacggattt gctgttcggt ggacctctcg aaaacctcga 6300 ggcgacctct gtcgaatacg accctgacga gcccgcgccg tgggcgtgga atcttcgagc 6360 tggtctcttc tctaaagacc tcgaatggtc tgctctcctc gacgagttac aagacctcgg 6420 ccccgattcg tagctggtcc cctctgattt tctatctgga gctgaccgag atcgtctatc 6480 cgtaaaacgc gggaaccctc ccaccgaccc acaactctag tggcggtggt ctctcctgaa 6540 atcaaaggct acgctgaagc catattttca ccatagcagg caggcaggcc gatacccccc 6600 tcccatgggg ggtggaggcc cgcccgcccg cgtacaggga accgaaggtt cccaaacggg 6660 tggcggtgct gtcgcggtgt cgtatcatcc gaataacctc gatactaagc ccctgtcttg 6720 tctccctatc ctttctaatt tcttattaat ctcttctaac tcttctttaa cctcgtctac 6780 ctcgagcccg cttctaatga gttctcggta tgcgtctgcg gttgagattc cctcctcttc 6840 tgcgtactct tccactaact caatcgttgc ctcattaagt cgtattgaca cgacctcctt 6900 tgaattgctc atggtttcac gtttacgatc gtctacaccg ggcaaacctt tttgttcggt 6960 cccttctgta gcataaccaa gcaaaagtct gctgtgtgat tggccccgcg cttggaaccc 7020 gtgtcgggcc tgtcacactc ctaacgcc 7048 //