ID FJ669143; SV 1; linear; genomic RNA; STD; VRL; 4082 BP. XX AC FJ669143; XX DT 23-MAR-2009 (Rel. 100, Created) DT 23-MAR-2009 (Rel. 100, Last updated, Version 1) XX DE Cocksfoot mottle virus isolate Oxford, complete genome. XX KW . XX OS Cocksfoot mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4082 RA Sun H., Ho T., Wang H.; RT "Genome sequencing and characterization of Cocksfoot mottle virus, Oxford RT isolate"; RL Unpublished. XX RN [2] RP 1-4082 RA Sun H., Ho T., Wang H.; RT ; RL Submitted (29-JAN-2009) to the INSDC. RL Plant Virology, CEH Oxford, Mansfield Road, Oxford, Oxfordshire OX1 3SR, UK XX DR MD5; 10a45f9c414d147d6c9da4937c067886. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4082 FT /organism="Cocksfoot mottle virus" FT /isolate="Oxford" FT /mol_type="genomic RNA" FT /country="United Kingdom" FT /db_xref="taxon:40979" FT CDS 70..396 FT /codon_start=1 FT /product="hypothetical protein" FT /note="CfMVp1" FT /db_xref="UniProtKB/TrEMBL:C0L974" FT /protein_id="ACN78880.1" FT /translation="MCEPPPGFITIQCYTSDDLSTGDSTIVKSIPVRSCFFRQGVEVVL FT FRCESNKHRWSKIRGPVSLTVHCDICEFRETVEIPSLPKGFKVASDFSYSVTWNCCYSR FT GRTE" FT CDS join(429..1634,1634..3256) FT /codon_start=1 FT /ribosomal_slippage FT /product="polyprotein" FT /note="ORF2a/2b" FT /db_xref="GOA:C0L975" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:C0L975" FT /protein_id="ACN78883.1" FT /translation="MGCSVVGNCKSVMSMSRMSGPKLALLISVAMAAAMTDSPPTLICM FT GILVSVVLNWIVCAVCEEASELILGVTLEATRPSPARVIGEPVFDPRYGYVAPAIYDGK FT SFDVILPISALSTASTRKETVEMAVENSRLQPLESSQTPKSLVALYSQDLLSGWGSRIK FT GLDGQEYLLTALHVWETNITHLCRDGKKVPISGCPIVASSADSDLDFVLVSVPKNAWSV FT LGVGVARLELLKRRTVVTVYGGLDSKTTYCATGVAELENPFRIVTKVTTTGGWSGSPLY FT HKDAIVGLHLGARPSAGVNRACNVAMAFRVVRKFVTVENSELYPDQSSGPARELDAETY FT TERLEQGIAFTEYDINGIKVKTSDREWTTAEALRIARYKPLGGGKAWGDSDDEDTQETA FT IRPFKLPAGGLPTGQSALGQLIEYAGYVWRDEGIINSNGMPFRSAGKSSCRFREAVCRA FT VHRDVRAAETEFPELKELAWPSRGSKAEIGSLLFQAGRFERVEAPANLQLAITNLQAQY FT PKSRPRSCFRREPWCREDFVAEIEKIAHSGEINLKASPGVPLAEIGVSNQQVIDVAWPL FT VCEAVVERLHALASVDPRQHDWSPEELVKRGLCDPVRLFVKQEPHSRQKIEQGRFRLIS FT SVSLVDQLVERMLFGPQNTTEIALWHSNPSKPGMGLSKAGQVTLLWEDLARKHQTHPGA FT MADISGFDWSVQDWELWADVSMRIELGSFPPLMAKAAISRFYCLMNATFQLTNGELLTQ FT ELPGLMKSGSYCTSSSNSRIRCLMAELIGSPWCIAMGDDSVXGWVDDAPRKYSALGHLC FT KEYEACPVLPNGDLEEVSFCSHLISKGRAELETWPKCLFRCLSGPHDVESLEMELSSSR FT RWGQIVRYLRRIGRVSGNDGEERSSNESPATTKTQSSAAAWGPPQEAWPVDGASLSTFE FT PSSGGWFHLEGW" FT CDS 429..2135 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF2a" FT /db_xref="GOA:C0L976" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:C0L976" FT /protein_id="ACN78881.1" FT /translation="MGCSVVGNCKSVMSMSRMSGPKLALLISVAMAAAMTDSPPTLICM FT GILVSVVLNWIVCAVCEEASELILGVTLEATRPSPARVIGEPVFDPRYGYVAPAIYDGK FT SFDVILPISALSTASTRKETVEMAVENSRLQPLESSQTPKSLVALYSQDLLSGWGSRIK FT GLDGQEYLLTALHVWETNITHLCRDGKKVPISGCPIVASSADSDLDFVLVSVPKNAWSV FT LGVGVARLELLKRRTVVTVYGGLDSKTTYCATGVAELENPFRIVTKVTTTGGWSGSPLY FT HKDAIVGLHLGARPSAGVNRACNVAMAFRVVRKFVTVENSELYPDQSSGPARELDAETY FT TERLEQGIAFTEYDINGIKVKTSDREWTTAEALRIARYKPLGGGKAWGDSDDEDTQETA FT IRPLNYQRAGSLRGSPPLANLSSTRATSGVTKESSIPTACHSDPLESRVAGLEKLCAER FT FTEMFELLRQSSQNSKNSPGQAAVQRQKSDRSSSKPEGLRESKRPPICNWQSLTSKPST FT RSPDPAPVSAESPGVAKTSSQKSKRSRTRGKSTSKQVPVSPSPKSGSATSK" FT CDS 3093..3857 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:C0L977" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C0L977" FT /protein_id="ACN78882.1" FT /translation="MMVRKGAATKAPQQPKPKAQQQLGGRRRRRGRSMEPVSRPLNPPA FT AVGSTLKAGRGRTAGVSDWFDTGMITSYLGGFQRSAGTTDSQVFIVSPAALDRVGTIAK FT AYALWRPKHWEIVYLPRCSTQTDGSIEMGFLLDYADSVPTNTRTMASSTAFTTSNVWGG FT GDGSSLLHTSMKSTGNAVTSALPCDEFSNKWFKLSWSTPEESENAHLTDTYVPARFVVR FT SDFPVVTADQPGHLWLRSRILLKGSVSPSTNL" XX SQ Sequence 4082 BP; 960 A; 1041 C; 1134 G; 946 T; 1 other; gataatagtg cgaagaaaga cacactgtta tcaatcccct cccaaatcag aggttgagta 60 gtagcttaga tgtgcgaacc tccccctggt ttcataacca tacagtgtta cacgagcgac 120 gatttgtcga caggcgattc aacaatcgtc aagtccatcc ccgtgcgctc gtgcttcttc 180 cgccaaggcg ttgaagttgt tctgtttcgg tgtgagtcca acaagcatcg ctggtcgaag 240 atcagaggtc cggtgagcct tacagttcat tgtgatatct gtgaattccg cgagacagtt 300 gagattccat ctctgcccaa aggcttcaaa gtagctagcg atttctctta cagtgtaacg 360 tggaattgct gttacagccg tggcaggaca gagtagcact gaggttagtt ggttgagggt 420 gaccaagaat gggttgttct gttgttggaa actgcaagtc cgtgatgtcg atgagcagga 480 tgagcgggcc aaagctagct ctcctcatat ccgtcgcaat ggcggcagcc atgacagact 540 ccccacccac tctgatatgt atggggatcc tagtgagcgt ggtgctcaac tggatcgtct 600 gcgcagtatg cgaagaagct tcagagctaa ttctgggcgt tacgttagaa gcgactcgtc 660 ctagccccgc aagggttata ggagagccag ttttcgaccc ccggtatggt tatgtcgctc 720 ctgctatcta tgatggcaag tcgtttgacg tgatcctgcc tatttccgct ctctccaccg 780 cttcaacaag gaaggagaca gtagaaatgg cagttgagaa ctcacgactg caacctctag 840 aaagcagtca aacgccgaag tccctggtgg ctttgtactc gcaggaccta ctatcgggat 900 ggggttctcg gattaaaggc cttgatggcc aggaatacct tctaacagct ctacatgtgt 960 gggagaccaa catcacccac ctttgcagag atggtaagaa ggtaccgata agcggatgcc 1020 caatcgttgc gagctctgct gactcggact tggactttgt ccttgtgtcc gtgccgaaga 1080 acgcttggtc tgttttaggc gtcggtgtgg ctcgtttgga attgctcaaa cgccgaaccg 1140 tcgtaacagt ctatggaggc ctagactcaa agaccaccta ctgcgctaca ggtgttgcgg 1200 agttggaaaa tcccttccgt atagtcacga aagtgaccac aacgggaggg tggtcaggct 1260 ctccactcta ccacaaggac gcaatcgtcg ggttgcactt gggagcgaga ccatctgctg 1320 gagtcaatag agcgtgcaac gttgctatgg ctttcagggt cgtgcggaaa tttgtcaccg 1380 ttgaaaacag tgagttatat cccgaccaga gcagtggccc agcccgagag ctcgatgctg 1440 agacatatac ggaaaggttg gagcaaggaa ttgcttttac agagtacgat ataaacggca 1500 tcaaggtgaa aacctccgat cgagagtgga ctacagctga ggcgttgcgt atcgcaaggt 1560 acaaaccctt gggtggagga aaagcatggg gtgatagtga tgacgaggac acccaggaaa 1620 ctgcaatccg gcctttaaac taccagcggg cgggctccct acggggcagt ccgcccttgg 1680 ccaacttatc gagtacgcgg gctacgtctg gcgtgacgaa ggaatcatca attccaacgg 1740 catgccattc cgatccgctg gaaagtcgag ttgccggttt agagaagctg tgtgcagagc 1800 ggttcacaga gatgttcgag ctgctgagac agagttccca gaactcaaag aactcgcctg 1860 gccaagccgc ggttcaaagg cagaaatcgg atcgctcctc ttccaagccg gaaggtttga 1920 gagagtcgaa gcgcccgcca atctgcaatt ggcaatcact aacctccaag cccagtaccc 1980 gaagtcccga ccccgctcct gtttccgcag agagccctgg tgtcgcgaag acttcgtcgc 2040 agaaatcgaa aagatcgcgc actcggggga aatcaacctc aaagcaagtc ccggtgtccc 2100 cctcgccgaa atcggggtca gcaaccagca agtaattgat gtggcctggc ccttggtgtg 2160 tgaggctgtg gtggaaaggc tccatgctct ggcatccgta gacccgcgcc agcatgactg 2220 gtccccagaa gaactcgtga agagggggtt gtgtgatcct gtaagactat ttgttaagca 2280 agaaccacac tcccgacaga agattgaaca aggccgtttc cggcttatct cttctgtctc 2340 acttgtagat caactggtgg aacgcatgct tttcgggccc cagaatacca cggaaattgc 2400 tctgtggcat tcaaatccct ctaaaccagg gatgggcctg tcgaaagcag gccaagtcac 2460 gctgttatgg gaggatttgg cgcgcaagca ccagactcac ccgggtgcca tggcagacat 2520 ctcagggttc gattggtccg ttcaggactg ggaactctgg gctgacgtat ctatgaggat 2580 tgagctcggc tcgtttccac cgttaatggc gaaggcagca atatcgcggt tttactgctt 2640 gatgaacgct accttccaat tgacgaatgg agagctctta acccaggaac tgcccggact 2700 catgaaatcc gggtcgtact gtacctccag ttccaactcc cgcattcgct gccttatggc 2760 tgagctcatc ggctcgcctt ggtgtatcgc aatgggagac gattctgtcn agggatgggt 2820 tgatgatgcc cctaggaaat attcagcgct aggccatctc tgtaaagagt atgaagcgtg 2880 tccagtgctc cccaatggag atttggagga ggtgagcttt tgctcccatc tcatctctaa 2940 gggtcgagca gagctggaga cgtggcctaa gtgcttgttt cgatgtctca gcggaccaca 3000 tgacgtggaa agcttggaga tggagctgag ctcttctcgc cgctggggcc agatcgtcag 3060 atacctccgc cggattggcc gggtctccgg aaatgatggt gaggaaagga gcagcaacga 3120 aagccccgca acaaccaaaa cccaaagctc agcagcagct tgggggccgc cgcaggaggc 3180 gtggccggtc gatggagcca gtctctcgac ctttgaaccc tccagcggcg gttggttcca 3240 ccttgaaggc tggtagaggc aggactgcag gtgtgagtga ctggtttgat accggcatga 3300 tcaccagcta cctaggtggt tttcagcgct cagctggaac cactgactcc caggtattca 3360 ttgtgtcacc cgctgcactg gaccgtgttg gaaccatagc aaaggcgtat gcgttgtgga 3420 gacctaagca ttgggaaatc gtatatctcc ccagatgttc aacacaaaca gatgggtcga 3480 ttgaaatggg atttctctta gattatgcgg atagcgtccc aaccaacacc cgaactatgg 3540 cctcctctac cgctttcaca acttcaaacg tgtggggagg tggagatggc agcagtttgt 3600 tgcacacgtc catgaagtcc acaggcaatg ctgttacgag cgctcttcca tgtgatgagt 3660 tttcgaacaa atggtttaag ttatcttgga gcactcctga ggaatcggag aacgctcatt 3720 tgactgacac ctacgttccg gcacgcttcg tggtgaggtc tgacttcccg gtagttacag 3780 ctgaccaacc aggtcatctg tggctccggt ccaggatctt gctcaaggga tcggtttccc 3840 cttctacaaa tttgtagtta agtaccgcag ggatggcaaa cctgtttcgc agtgcccgcg 3900 cttggtggag tcgcgtttgt ccacttggaa atctaactcc agagctttgc tcgaagattg 3960 acggattagt atcacctccg taaggatact gaccactggc tgggctcgtc acccctcctt 4020 tgtgtctcac aaacgacgaa tctgcgctcg gcaaatgaca ggatcatggc cggggcaggt 4080 gc 4082 //