ID FJ665628; SV 1; linear; viral cRNA; STD; VRL; 6280 BP. XX AC FJ665628; XX DT 14-JUL-2009 (Rel. 101, Created) DT 20-MAY-2010 (Rel. 104, Last updated, Version 3) XX DE Barley yellow striate mosaic virus isolate Zanjan-1 polymerase (L) gene, DE complete cds. XX KW . XX OS Barley yellow striate mosaic cytorhabdovirus OC Viruses; Riboviria; Negarnaviricota; Haploviricotina; Monjiviricetes; OC Mononegavirales; Rhabdoviridae; Cytorhabdovirus. XX RN [1] RP 1-6280 RX DOI; 10.1111/j.1439-0434.2009.01624.x. RX AGRICOLA; IND44351564. RA Almasi R., Afsharifar A., Niazi A., Pakdel A., Izadpanah K.; RT "Analysis of the Complete Nucleotide Sequence of the Polymerase Gene of RT Barley Yellow Striate Mosaic Virus- Iranian Isolate"; RL J. Phytopathol. 158(5):351-356(2010). XX RN [2] RP 1-6280 RA Almasi R., Afsharifar A., Niazi A., Izadpanah K.; RT ; RL Submitted (28-JAN-2009) to the INSDC. RL Plant Protection, Shiraz University, Plant Virology Research Center, RL Shiraz, Fars, Iran XX DR MD5; b20ec16355f04aeb21e0130eaaee87f4. XX FH Key Location/Qualifiers FH FT source 1..6280 FT /organism="Barley yellow striate mosaic cytorhabdovirus" FT /host="wheat" FT /isolate="Zanjan-1" FT /mol_type="viral cRNA" FT /country="Iran" FT /db_xref="taxon:1985699" FT gene 1..6171 FT /gene="L" FT CDS 1..6171 FT /codon_start=1 FT /gene="L" FT /product="polymerase" FT /db_xref="GOA:C7AXL4" FT /db_xref="InterPro:IPR014023" FT /db_xref="InterPro:IPR016269" FT /db_xref="InterPro:IPR026890" FT /db_xref="InterPro:IPR039736" FT /db_xref="UniProtKB/TrEMBL:C7AXL4" FT /protein_id="ACT21686.1" FT /translation="MDLLEDDVKRRMRGLGDFHLRSAIVPIEINSLRAGIGRARELRAF FT RRIIQYHPNVFCGDPASTLAQILRTSSSGELKSILMFKETVELIKAEYKGMGFLTSNQD FT PMERLLMLLMKVKGIRSRYASSKIAYQRLLMCANAMNSQRSYSVFQLDTDVVPGAPSLT FT VNGLTVGVWGEFITISSADNPISLFSLDVLRMIVDKLTERDNVIISSFIGEKIFPHIYP FT KVDVITQVFDLFDNWLYYKGNLGYRLMKTYEALVTGTILKRDKSNYHNSEDFLENTIAG FT LEQDEQEVARKFVHILDDSKPSPHHLTQIMGLFRLWGHPQVDAKKGVEKVRTIGTKKKY FT ISEHASQIAGRKFKEIFFSEYFRKNRVYPACIVEEDCWLNEFIVQNLGINLKDPRYHLS FT DWDCVEPRETFSIPTTFNLSMIVSDTAISPTREEIFSCQEKGIPPMDPFIRRGVLKWMK FT DGLIDCDSLLKGINSCKTGLDKDNRIIGLYPKEREMNPTARMFALMSLKMRSYVVITEN FT MLSENILPHVPGITMTYSMLDLAKEMIKSTRSQGKQGDFSRTFCINMDFEKWNLNMRKE FT ATYYTFLEIGRLFGLPQLYNRTYDIFRNSLIYLADGSYTPKLDDNLDSLEKDQNLCYTD FT HIGGFEGLRQKGWTIFTVVLIAHVCDQLGIQYRLMGQGDNQVLMVTIHSKHARLNGIDS FT PGSKNEIAGKLQMLLRSLQDTFNEVGLPLKPLETWVSDTYFSYGKMPIYKGVPLCSSLK FT RISRIFYFSNEDLMTIDNALGAVTANSQAAVMADIHPAIPYFIAKWQHLQCLSVFSRYH FT PLVGEPMMEHEGTVKFQMKLDKGEKWESESDQIFSRETLLMIYASVPKTLGGLNIATYF FT DMILRGYSDPPMKDYQFLNLLTEGSTGQLRQGLVNWRRVLLSPSVDYLHLLQDPTSLNI FT LCPPNSNTMIKRMIHSTIEGIDSNSEFSGWFKELIGISSEKKMDGIVEKLTSGEEINAR FT LNHDIMGATLFGYSDAIASKVDKTVTLSRMTVAQQDVVGSLVAGEQRVWRYLMWRSNYR FT GGEVRISKCPSKQIRHLRDKGWKKKVIGISTPYPFHFIGGIEDTDRKDSYVEVVVNDLV FT LSHPDLLQTASGSSLPYLGSVTKEKLHNTAARAAYGIEPLITRPLRLLRTIGWFIDENS FT NLAKSIENLLRAVTDLDPSEVIVIPEHVKGSMMHRYVDMALKHGSLWMPSFGPPSHLSI FT STNYFAEYAKGSKNVTLHFQALLGLIQYSVINKCMSGEPRKILRFYRTCPDCITPVDEP FT KEDIAEVLSDKEIPSRPDNPYLFVKKEKIALIHKRELDNYESITVIHKPFIIKYPHVGR FT RFLTEVLSVRTANAILYQTSLEDSGVLDISGVSRTIFLKLDIQAFFLTIAKLIWIGASS FT TARVASGDIYPSWAYMKDSLIRRVWEAPSSAFTILSGLYLWEENINEMVRYSWAVMPLT FT YPATPSSVCIAAKNSLIRFMGRVENVSIESSWLVSPLIKVDPGILLKSNLLFYRGKIRS FT ECNSCVTVGMSCKIRSSSDWSEIAKIKCKSGHSVFTMKGWKLLKRLVLDIETLADNVPT FT APRKTLPRADRKFPLIAPYGITHELANQSTFSGASEVSYQMPGEEFLLRPKDDYSDKYE FT YALPTKAIYRVFEGVSEVPEFKNFGSILVLGDGFGYSSLVCKMINPDAKIISWTLIDPS FT SGIQHCLRLSRPPTHYMSNMQIDNSPTIEYPSDVSDPKFKEALKEVVEKRKVDLVLSEV FT ELLYSGVEMTELDMVLQYWESGVQHVLHKFQFQTFTQVRDLIESVRSLYGSWKIFISGT FT VNFKSGEFWLKMWDRRDDPISKSKLTYNSTILLYDTLRLNHENMLLVSPGGYCSDLNQH FT LDATFLKGYREQMLDIWFQDASIIHWRAKDFTQMYYALRTGKRPAHVLDTQGNTVYYLH FT ADMSEKIFERLLTLALSLLKSESRFIGILDLPWKLKWEKSQETVSVRSKYKWAPALVQE FT GNVLISDRVRSNIIRYLPCVAAVRREVGVSYETVPKRIRFCPPGKNNKMLRFDITKGAS FT FTTPY" XX SQ Sequence 6280 BP; 1933 A; 1289 C; 1410 G; 1647 T; 1 other; atggatcttc tcgaagatga cgtcaaaagg cgcatgcgag ggctgggaga tttccacctc 60 cgttcggcca tcgtcccaat cgagatcaac tctctcagag cagggatagg gagggcaaga 120 gaacttcgag cttttcggag gatcatacaa taccacccaa atgtcttctg cggcgaccct 180 gcctcaactc tggcacagat actcaggaca tcctccagtg gagaactaaa gagcattctc 240 atgttcaagg aaacagtgga gctcatcaaa gccgagtaca agggcatggg ttttcttacg 300 tctaatcaag atccaatgga gagacttttg atgctcctca tgaaagtaaa agggatccga 360 tctagatacg cctcctcaaa gatagcctat caaagactat tgatgtgcgc aaatgccatg 420 aattcacagc gctcatactc cgttttccag cttgatacgg atgtagtacc tggtgctcca 480 tctctcactg tgaatggatt aactgtagga gtgtggggag agtttataac tatatcctca 540 gcagataatc ctatctcctt attctcatta gatgttttga gaatgattgt agataagtta 600 acagagaggg acaatgttat aatctcctct tttatcgggg agaaaatatt cccacacata 660 taccccaaag tagatgtgat aacacaggta tttgacttat tcgataactg gttgtactac 720 aaagggaatt taggatatag gctaatgaaa acatatgagg cattggtaac tggaactatt 780 ctaaagaggg acaagtccaa ttatcacaat tctgaagatt ttctggagaa cacaattgca 840 gggctggagc aagatgaaca ggaagtagct agaaagtttg tccatattct agatgactca 900 aagccttctc cacaccatct tacccagata atgggactct tcagattgtg gggtcatccg 960 caggtagacg ccaagaaggg ggttgagaaa gtcagaacca tcgggaccaa gaaaaagtat 1020 atatcagagc atgccagcca aattgcaggt cgaaaattca aggaaatatt cttctccgaa 1080 tattttagaa agaacagagt ctaccctgca tgtatagttg aggaagactg ttggttgaac 1140 gaatttatag tccagaattt aggaatcaat ctgaaagatc ctagatacca cctttctgac 1200 tgggactgcg ttgaaccaag agagacattc tctattccaa cgacattcaa tctctccatg 1260 atagtgtctg atactgctat cagtcctact cgcgaagaga ttttttcttg tcaggaaaag 1320 gggataccac ctatggatcc cttcataaga agaggggtgt taaaatggat gaaagatggg 1380 cttatagatt gcgactcact cttaaagggt ataaatagct gcaagaccgg gcttgacaag 1440 gacaacagaa ttatcgggtt atatcctaaa gagagagaaa tgaatccaac agccaggatg 1500 tttgcactta tgtctttgaa aatgaggtcc tatgttgtca tcacggagaa catgctatcc 1560 gagaatatac ttcctcatgt cccggggatc acaatgacat acagtatgtt agatctagct 1620 aaagagatga tcaaatctac tagatcacaa ggcaagcagg gagatttttc taggacattc 1680 tgcataaaca tggactttga gaaatggaac ctcaacatga ggaaggaagc cacctactac 1740 accttcttgg agatagggcg cttatttggt cttccccagc tgtataatcg aacctatgat 1800 atattcagaa attctctaat atacttagca gatgggtctt acacaccaaa attagatgac 1860 aatctcgact ctcttgagaa ggatcaaaac ctatgctaca cagaccatat aggtggcttt 1920 gaagggttga gacaaaaggg ctggaccatc tttacagttg ttcttatagc ccatgtttgt 1980 gatcaactgg gcatccagta ccgcttgatg ggtcaaggtg ataatcaggt gttaatggtg 2040 accattcatt ccaagcatgc tcgcctgaat ggaatagaca gtccgggaag caagaacgaa 2100 atagccggaa aactccagat gctgctgaga tccttgcaag atactttcaa tgaggttggt 2160 cttcctttga agcccttaga aacctgggta tcggacactt atttctctta tgggaagatg 2220 ccgatctaca agggggttcc tctctgcagt tctttgaaac gtatatcgag gatcttctat 2280 ttttcgaatg aggacctgat gacaatagat aatgcattgg gggctgtcac tgcaaactct 2340 caagcagcag taatggcaga catccacccg gccataccat acttcatagc aaaatggcaa 2400 catcttcaat gtcttagtgt attctcgaga taccaccctc ttgtagggga acccatgatg 2460 gaacatgaag gcacagtcaa gttccagatg aaacttgaca aaggagaaaa atgggagagt 2520 gagtcagatc agatcttttc tagggaaacc ctgctcatga tctatgcaag tgtgccgaaa 2580 acattaggag gcctcaacat tgccacttac tttgatatga tactaagggg gtactccgac 2640 cctccaatga aagactacca atttttgaac ctattaactg aagggtccac cggtcagttg 2700 cgacaaggtt tagttaattg gaggagagtt ctcctgtccc catctgtaga ttatctgcac 2760 ctcctccagg accctacatc tctaaacatc ttatgtcctc cgaattccaa tacaatgatc 2820 aaaaggatga ttcactccac cattgagggt atagattcaa attcggagtt ctctggatgg 2880 ttcaaagaat tgataggcat cagttcagag aaaaagatgg acggaattgt ggaaaagttg 2940 acctcaggag aggagataaa cgcgagactc aatcatgata tcatgggagc aactctattc 3000 gggtactctg atgcaattgc ctctaaggta gacaagactg tgacattatc caggatgact 3060 gtggctcaac aagatgtagt cggatctctt gtagcaggag agcagagagt atggcgttat 3120 ctaatgtgga gatccaacta taggggtggg gaagtccgca tttccaaatg cccctcaaag 3180 cagatcagac atctcaggga taaaggatgg aaaaagaaag tgataggaat ttcaactcct 3240 tatccatttc atttcatagg aggcatagag gacacagatc ggaaggactc atacgtcgag 3300 gtggtagtca atgacctcgt attgagtcat ccagatcttc ttcagacagc atcaggatcg 3360 tccttgcctt atttgggcag tgtgacaaaa gagaagctac acaatactgc tgccagagct 3420 gcatatggga ttgagccttt aataacaaga ccattgagat tgctgagaac tatagggtgg 3480 ttcatagacg aaaacagcaa tctagctaaa tctatagaga atctcctccg agccgttact 3540 gatcttgatc ctagtgaggt tatagttatc ccagaacatg tgaagggttc aatgatgcac 3600 aggtatgtgg acatggcctt aaagcatggg tccttatgga tgccatcatt tggtcctccc 3660 tcgcatctat caatatcgac taactatttt gcagaatatg cgaagggatc caaaaatgtg 3720 actctacatt tccaggcact actaggattg atacaatatt ctgtcatcaa taaatgcatg 3780 tcaggtgaac cgagaaagat ccttcgattc tacaggactt gtccagactg cataaccccg 3840 gtagatgaac caaaagagga cattgcagaa gttctatcgg ataaggagat tccctctaga 3900 cctgacaacc cctacttatt tgtcaaaaag gagaaaatag ccttaattca caagagagag 3960 ctcgacaatt atgagagtat tacagttatc cacaaaccat ttataataaa ataccctcat 4020 gtaggtagaa gattcttaac tgaggtcctg tctgttcgaa cagcgaatgc aatcctctat 4080 cagacatcat tggaagactc aggagttcta gatatttccg gagtgagcag aactatcttt 4140 ttaaagttgg atatacaagc cttctttctg acaatagcga agttgatatg gataggggca 4200 tcttcaacgg ctagagtagc atctggagac atatatccct cgtgggcata catgaaggac 4260 tcattgatca ggagagtatg ggaggcccct tcttctgcat tcacgatcct gtcgggactg 4320 tatctctggg aagagaatat caatgagatg gtaagatatt cgtgggcagt tatgcctctc 4380 acttaccccg caacgccaag ctccgtttgc atagcggcaa agaactcatt aataagattc 4440 atgggaagag tagaaaatgt gagcatcgaa tcatcctggc ttgtgtcacc tctcatcaaa 4500 gtggaccccg ggatcctcct aaagtcgaat ctgctatttt atcgggggaa aatccgatcg 4560 gaatgcaatt catgtgtcac agtaggaatg tcatgcaaga tcagatctag ctcagactgg 4620 tcagagatcg ctaagatcaa gtgcaagagc ggtcatagtg tattcaccat gaaagggtgg 4680 aagctattaa agaggctcgt tctggacatt gagacacttg cagataatgt tccaactgct 4740 ccacgaaaga ccttgcctag ggctgataga aagtttccat tgattgctcc ctacggaata 4800 actcatgagt tggctaacca gtcaacattc tcgggagctt cagaggtgtc atatcagatg 4860 cctggagaag aattcttgct cagacccaaa gatgactact ctgacaagta cgagtatgcc 4920 ctcccgacaa aggctatata cagggttttt gaaggggtca gtgaggttcc ggaatttaag 4980 aactttgggt ccattttagt cttaggtgat ggatttgggt attcctcact tgtctgcaaa 5040 atgataaacc cggatgctaa gataatttcc tggacattga tagatccatc atctggaata 5100 caacactgtc tacggttgtc gcgtcctccc actcattaca tgtcaaatat gcagattgac 5160 aactctccca caatcgagta tccatccgat gtatctgatc ctaaattcaa ggaagcattg 5220 aaagaagtgg tggagaagag aaaggtagat ctagtcttga gtgaagtgga actattgtat 5280 tctggggtag aaatgacaga gctcgatatg gttctacaat attgggagtc tggagtacaa 5340 cacgtactgc acaaattcca gtttcaaaca ttcactcaag ttagagatct aattgagtca 5400 gtacgatccc tatatggatc ctggaagata tttatatcag ggactgtaaa cttcaaatct 5460 ggagagttct ggctgaaaat gtgggacaga cgtgatgatc ctatctccaa atcgaaacta 5520 acctataact ccaccatact tctgtacgac acattgcggc tcaatcacga aaatatgtta 5580 ttagtttctc cagggggcta ttgctctgat ttgaaccagc atttggatgc tacattcctg 5640 aaagggtatc gagaacagat gctcgacata tggttccagg atgcttccat aattcattgg 5700 agagcaaaag acttcacaca gatgtattac gcgcttcgga caggaaaaag gcctgcacac 5760 gtcctagaca cacaggggaa cactgtctat tatctacatg cagacatgtc tgagaagata 5820 tttgagcgcc ttctgacctt agcactgtct ctgctcaaaa gtgagagcag atttatagga 5880 atcctggacc tcccctggaa actcaaatgg gaaaaatctc aagagactgt atcagtgaga 5940 agcaagtaca agtgggctcc tgcattggtt caagaaggaa atgttttgat atccgataga 6000 gtgaggtcca atataatcag gtacctcccc tgcgttgctg cagtcaggag agaggtggga 6060 gtctcttatg agactgtccc gaagaggatt agattctgtc ctcctgggaa gaataacaaa 6120 atgctcagat ttgacatcac taagggggca tcatttacaa ctccctattg accatagtat 6180 aaatartaaa aaccattatg ataaaaacta tgattattta tcaaacaaat aaatctatag 6240 attaggaaaa ccggccatct gatgatcatc ctatcagaaa 6280 //