Dbfetch
ID FJ660433; SV 1; circular; genomic DNA; STD; VRL; 2756 BP. XX AC FJ660433; XX DT 23-MAR-2009 (Rel. 100, Created) DT 08-OCT-2009 (Rel. 102, Last updated, Version 2) XX DE Tomato leaf curl Palampur virus isolate IR:Ker:T8X:Cuc:07 segment DNA-A, DE complete sequence. XX KW . XX OS Tomato leaf curl Palampur virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2756 RX DOI; 10.1007/s00705-009-0389-6. RX PUBMED; 19424773. RA Heydarnejad J., Mozaffari A., Massumi H., Fazeli R., Gray A.J., RA Meredith S., Lakay F., Shepherd D.N., Martin D.P., Varsani A.; RT "Complete sequences of tomato leaf curl Palampur virus isolates infecting RT cucurbits in Iran"; RL Arch. Virol. 154(6):1015-1018(2009). XX RN [2] RP 1-2756 RA Heydarnejad J., Mozaffari A., Massumi H., Fazeli R., Gray A., Meredith S., RA Lakay F., Shepherd D.N., Martin D.P., Varsani A.; RT ; RL Submitted (25-JAN-2009) to the INSDC. RL Plant Protection Department, Shahid Bahonar University of Kerman, 22 Bahman RL Ave., Kerman 7616914111, Iran XX DR MD5; fd350658c88366dd7c4fc518d6c1dff6. XX FH Key Location/Qualifiers FH FT source 1..2756 FT /organism="Tomato leaf curl Palampur virus" FT /segment="DNA-A" FT /host="Cucumis sativus L." FT /isolate="IR:Ker:T8X:Cuc:07" FT /mol_type="genomic DNA" FT /country="Iran:Kerman" FT /collection_date="2007" FT /db_xref="taxon:526476" FT gene 120..467 FT /gene="AV2" FT CDS 120..467 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:C0L6C0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:C0L6C0" FT /protein_id="ACN77007.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKTYSPDTIGYDLVRDL FT ISVVRARNYGEASSRYLHFNARIESTPSSELRQPVCCPCSCPYCPRHKGKGMGEQTHEP FT ETKILPDVSKL" FT gene 280..1050 FT /gene="AV1" FT CDS 280..1050 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:C0L6D3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C0L6D3" FT /protein_id="ACN77008.1" FT /translation="MVKRPADIYISTPASKARRRLNFDSPYAVRAAVPIVRATKAREWV FT NRPMNRKPRFYRMYRSSDVPRGCEGPCKVQSFESRHDVSHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGDVFNMFDNEP FT STATVKNMHRDRYQVLRKWHSTVTGGTYASKEQALVRRFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHYSNPVYATLKIRIYFYDSVTN" FT gene complement(1047..1457) FT /gene="AC3" FT CDS complement(1047..1457) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:C0L6C2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C0L6C2" FT /protein_id="ACN77009.1" FT /translation="MITDSRTGEYITADRAESGVYIWDVPNPLYFKILKHDERPCLTNH FT DIITVQIQFNHNLRKALGLHKCFLTFQIWTGLRPQTGRFLRVFRTQVLKYLDMLGVVGI FT NNVIRAAYHVLDNVLQRTVDVWATYDVKLNTY" FT gene complement(1177..1596) FT /gene="AC2" FT CDS complement(1177..1596) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:B3CJR2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B3CJR2" FT /protein_id="ACN77010.1" FT /translation="MQSSLHSRDHSIPVAKTSLPKKKKKNIRRRRVDLQCGCSYYISIN FT CHDHGFTHRGIHHCGSSREWRVYLGRSKSPVFQNFETRRETLPHEPRHYNSPNTVQPQP FT EESTGASQVFSNIPDLDGLTPSDWAFLESFQNPGP" FT gene complement(1499..2602) FT /gene="AC1" FT CDS complement(1499..2602) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:C0L6D6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C0L6D6" FT /protein_id="ACN77011.1" FT /translation="MAPPTRFRINAKNYFLTYPKCSLTKEEALSQLQNLETPTSKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVAPSRSAHFHPNIQGAKSASDVKTYI FT DKDGDILEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDALKVLKELAPKDYVLQFH FT NLMTNLDRIFPSRIEVYRSPFNVSSFDRVPPELVDWVSSNLRCSAAQPLSAALPIRPIG FT LVLEGDSRTGKTMWARSLGPHNYLCGHLDLNPRVYSNDALYNVIDDVDPHYLKHFKEFM FT GAQRDWQSNTKYGKPIMIKGGIPTIFLCNKGPQSSYKEFLDEEKNAALKQWALKNAVFI FT TLEGPLYSGRENVAPQEEEEEHPQETS" FT gene complement(2269..2445) FT /gene="AC4" FT CDS complement(2269..2445) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C0L6C5" FT /protein_id="ACN77012.1" FT /translation="MGLRISMFSSNLKENSSAKITDSSTWLPQVGQHISIRTFRELNQR FT QMSRHTSTKTETY" XX SQ Sequence 2756 BP; 730 A; 585 C; 616 G; 825 T; 0 other; accgaatggc cgcggtgcct tttgtgtggg tccagaacca atgaaattcg agatacatgg 60 ctaatttaat gcgtggggac caataaatag acttccgcac caagtttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttcctg aaagcgttca tggtcttagg tgcatgctag 180 ctgtaaaata tctccaagag attgaaaaga cctattctcc ggacacaatc ggatacgatc 240 ttgttcgtga cctaatctct gtcgtccgtg cgagaaacta tggtgaagcg tccagcagat 300 atctacattt caacgcccgc atcgaaagca cgccgtcgtc tgaacttcga cagcccgtat 360 gctgtccgtg cagctgtccc tattgtccgc gccacaaagg caagggaatg ggtgaacaga 420 cccatgaacc ggaaaccaag attttaccgg atgtatcgaa gctctgacgt gcccaggggc 480 tgtgaaggcc catgtaaggt gcaatctttt gagtccaggc acgatgtctc tcatattggt 540 aaagtcatgt gtattagcga cgttacccgt ggaaccggtc tcacacatcg cgtcggaaaa 600 cgattttgtg tgaagtcagt ctacgttctg ggtaagatct ggatggatga gaatattaag 660 accaagaacc acacgaatag tgtgatgttt ttcttggtgc gtgatcgtcg acctacgggt 720 gcgcctcaag atttcggcga tgtgttcaat atgttcgaca atgaaccgag cactgctact 780 gtgaagaata tgcatcgtga tcgatatcaa gttctcagaa aatggcattc gactgtgacg 840 ggaggaacat acgcttcgaa ggaacaagca ttagttagac gttttgttag ggttaataat 900 tatgttgtct ataatcaaca agaggccggc aagtatgaga atcatactga aaatgcatta 960 atgttgtata tggcctgtac tcattattca aatcctgtgt atgcgacttt aaaaatccgg 1020 atctattttt acgattcggt gacaaattaa tatgtattaa gttttacatc atatgttgcc 1080 catacatcaa ctgttctttg caatacattg tctaatacat gataagctgc tcttattaca 1140 ttattaattc caacaacacc taacatatcc aggtacttaa ggacctgggt tctgaaaact 1200 ctcaagaaac gcccagtctg agggcgtaag cccgtccaga tctggaatgt tagaaaacac 1260 ttgtgaagcc ccagtgcttt cctcaggttg tggttgaact gtatttggac tgttataatg 1320 tcgtggttcg tgaggcaagg tctctcgtcg tgtttcaaaa ttttgaaata caggggattt 1380 ggaacgtccc agatatacac gccactctct gctcgatccg cagtgatgta ttcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tatgtaatag gaacaaccac actgcaaatc 1500 aactcgtctc ctgcggatgt tcttcttctt cttcttgggg agcgacgttt tcgcgaccgg 1560 aatagagtgg tccctcgagt gtaatgaaga ctgcattctt caatgcccac tgtttcagtg 1620 ctgcattctt ttcttcgtct aagaattctt tatagctgct ttgtggtcct ttattgcaca 1680 agaagatagt gggaatgccg cctttaatca ttatcggctt tccgtacttt gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaaatgctt tagataatgg ggatcaacgt 1800 catcaatgac gttgtataaa gcgtcgttac tgtaaaccct agggtttaga tccaagtgac 1860 cgcacaagta attgtggggt cccaaactac gcgcccacat tgttttgccc gtacgactat 1920 cgccctccaa tactaaccct atgggtctaa ttggtagcgc agcggaaaga ggctgcgcag 1980 cggaacacct cagatttgac gacacccaat cgacgagttc tggcggaact ctgtcgaagg 2040 acgaaacatt aaatggcgaa cgataaactt caattcgtga cggaaagatc cgatctaaat 2100 tcgtcattaa attgtgaaac tgcaacacat aatcttttgg tgctaattct tttagcacct 2160 ttaatgcatc atctttattt ccagtgttaa ttgcttgtgc gtaagcatca ttagctgttt 2220 gttgaccacc acgagcagat cgtccgtcga tctgaaaaac accccactct agtatgtctc 2280 cgtctttgtc gatgtatgtc ttgacatctg acgctgattt agctccctga atgttcggat 2340 ggaaatgtgc tgaccgactt ggggcaacca agtcgaagaa tctgttattt ttgcactgga 2400 attttccttc aaattggatg agaacatgga tatgcggaga cccatcttcg tgaagctctc 2460 tgcagatttt tatgaatttc tttgatgtag gggtttctag gttttgtaat tgggaaagtg 2520 cctcttcttt agttagagag cactttggat atgtaaggaa atagtttttt gcatttattc 2580 tgaaacgagt tggcggagcc atagacctcg aatttccaac cggtgtctct caacttcttg 2640 tattatattg gtgtctgggg tcctatatat acataagacc cttaatggca atatagtaat 2700 tttagggata aaattacttt aatttaaact cttatagcgg ccattcgtat aatatt 2756 //