Dbfetch
ID FJ660426; SV 1; circular; genomic DNA; STD; VRL; 2719 BP. XX AC FJ660426; XX DT 23-MAR-2009 (Rel. 100, Created) DT 08-OCT-2009 (Rel. 102, Last updated, Version 2) XX DE Tomato leaf curl Palampur virus isolate IR:Jir7:T11P:Cuc:07 segment DNA-B, DE complete sequence. XX KW . XX OS Tomato leaf curl Palampur virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2719 RX DOI; 10.1007/s00705-009-0389-6. RX PUBMED; 19424773. RA Heydarnejad J., Mozaffari A., Massumi H., Fazeli R., Gray A.J., RA Meredith S., Lakay F., Shepherd D.N., Martin D.P., Varsani A.; RT "Complete sequences of tomato leaf curl Palampur virus isolates infecting RT cucurbits in Iran"; RL Arch. Virol. 154(6):1015-1018(2009). XX RN [2] RP 1-2719 RA Heydarnejad J., Mozaffari A., Massumi H., Fazeli R., Gray A., Meredith S., RA Lakay F., Shepherd D.N., Martin D.P., Varsani A.; RT ; RL Submitted (25-JAN-2009) to the INSDC. RL Plant Protection Department, Shahid Bahonar University of Kerman, 22 Bahman RL Ave., Kerman 7616914111, Iran XX DR MD5; ffdf9c7ca7624d3a04d6b1fdad574379. XX FH Key Location/Qualifiers FH FT source 1..2719 FT /organism="Tomato leaf curl Palampur virus" FT /segment="DNA-B" FT /host="Cucumis sativus L." FT /isolate="IR:Jir7:T11P:Cuc:07" FT /mol_type="genomic DNA" FT /country="Iran:Jiroft" FT /collection_date="2007" FT /db_xref="taxon:526476" FT gene 426..1232 FT /gene="BV1" FT CDS 426..1232 FT /codon_start=1 FT /gene="BV1" FT /product="nuclear shuttle protein" FT /db_xref="GOA:C0L6B0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:C0L6B0" FT /protein_id="ACN77067.1" FT /translation="MAFPSPYTTPRRSGLSYARRFNGSRNVRFWKFRKSQPWLRRRSNE FT GFSRSATELFGEPISKQYTRKEICETQQGTEYVLQNNRYMTSYVTYPSKTRTGTNNRVR FT SYIKLKSLNISGTFAIRSTEMMTEVDQGGGLYGVMSVVVVRDKSPKIYSTAQPLIPFVD FT IFGSVNACRGTLKVAERHCDRFVVLNQSSIIVNTPHINTIKKFCIRNCIPKTYTTWVTF FT RDEEEDNCTGLYSNTLRNAILIYYVWLSDVPSQVDLYSNLILNYIG" FT gene complement(1298..2143) FT /gene="BC1" FT CDS complement(1298..2143) FT /codon_start=1 FT /gene="BC1" FT /product="movement protein" FT /db_xref="GOA:C0L6B1" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:C0L6B1" FT /protein_id="ACN77068.1" FT /translation="MSIRNESEGLSVGGYVQSERIEYALTNDAAEVKLMFPSMFEQKIS FT QLRNRCMKIDHVVLEYRNQVPINAVGHVVIEIHDMRLTEGDTKQAEFTIPIKCNCNLHY FT YSSSYFSLKDVNPWRVEYRVENTNVVNGVHFCKMLGKLKLSSAKHSTDVEFRPPKIEIQ FT SKEFTLNDIDFWSVGSKPQTRRLVDGSRLIGHSSRSLRVPYLTIGPNESWASRSEIGHS FT SVSSRPYKNLSGLDDSAIDPGPSASQTGSITRDEIADIITKTVEQCIKSNVNAPLSRGV FT " XX SQ Sequence 2719 BP; 783 A; 558 C; 512 G; 866 T; 0 other; accgaaaggc cccgtttcct tggcgcttca tcttagccgt tcttttttac atgccttata 60 attctaacgg ttctacctgt aacacgtgtc tatatggcag gctttattca cttaaagcct 120 tagctcgcgt tttagtggtg cgcatcgtcc tccattgaat aaagcttatt tattactttt 180 atatggtccc atgcgctatt aaaagaagtt caataattca aaatgcactg acaacgtctc 240 tttttattga tcggccaaga tcaatcggta attgctacga aatttccacc cgtcggatta 300 aagagttatg cttcaattca aacattaatt gtttgaattt tatgcgtccc tccatgtgcc 360 tactttccct ttatataccc taccatatat ctatatctgt ttaggttctt tgcgtcttta 420 tctaaatggc ttttccttct ccttatacca cccctcgtcg gtctggttta tcctatgcgc 480 gacggttcaa cggaagcaga aacgtcagat tttggaaatt ccgtaaatct caaccatggt 540 tacgccgacg ctcaaatgaa gggttttcca gatccgccac tgaactgttt ggagagccaa 600 tctccaaaca atatacgcgt aaagaaatct gtgaaacaca acagggaacg gaatatgttt 660 tgcagaacaa cagatacatg acctcctacg taacatatcc ctcgaaaact agaacgggaa 720 cgaacaaccg agttcgttct tacatcaagt taaaaagcct gaacatatct ggaacatttg 780 ccattcgcag tactgaaatg atgacggaag tagaccaggg tggtggttta tatggtgtga 840 tgtcagtagt tgtagttaga gataaatcgc ctaagattta ttccactgca caaccattaa 900 ttccatttgt tgatatattc ggatcggtaa acgcgtgccg gggaacattg aaagtggcgg 960 aacgccactg tgatagattc gtagttttga atcagtcttc cataatagtt aatactccgc 1020 atattaacac tattaaaaaa ttctgcattc gcaattgcat cccaaaaacc tatactactt 1080 gggtcacgtt ccgcgacgaa gaagaggaca actgcactgg actatactcc aatactttgc 1140 gaaatgctat ccttatttat tatgtatggt taagcgacgt accctctcaa gtcgatttgt 1200 atagtaattt aattcttaat tatattggtt aaattaatgt attaaacatg aataatgcac 1260 tcgtaatgca aaagtaataa atttgacata aaatttatta tacgcccctt gaaagtggtg 1320 catttacatt cgattttata cattgttcta cagttttcgt aattatatct gcaatttcgt 1380 ccctcgtaat acttcctgtt tgtgacgccg aaggcccagg atcgattgct gaatcgtcca 1440 atccgcttaa gttcttgtaa ggtctgctgc tgacggacga atgtccgatc tctgatctgc 1500 tagcccatga ttcgttcgga cctatcgtca gatatggtac tcttaacgat ctagaactgt 1560 gtccgattaa tcttgaacca tccaccagac gtcttgtctg tggtttcgaa cccacagacc 1620 agaaatcaat gtcgtttaat gtgaattcct tgctttgtat ttcaattttt ggtggtcgga 1680 attcgacgtc agtcgaatgt tttgccgagg atagtttcaa tttacccaac attttgcaga 1740 agtgtactcc attaacgacg ttggtgtttt ccactctgta ttcaaccctc caaggattaa 1800 catccttgag cgagaagtaa gacgaagagt agtagtgcag gttacaattg catttgatgg 1860 gaatagtgaa ctcagcctgt ttcgtgtctc cttccgtcaa cctcatgtcg tgtatttcaa 1920 tcacgacatg tccaactgca ttaattggta cctgattgcg gtattctaaa acgacgtgat 1980 caattttcat gcatctgttt cgtaattggc ttattttctg ctcgaacatc gacggaaaca 2040 ttaatttgac ctctgcagca tcgtttgtga gcgcgtactc aatacgttct gactgaacgt 2100 accctcccac ggacaaaccc tcgctttcat ttcttattga catattggaa gcgcagcgaa 2160 tagggagcgc agtggatatg cagtaaaacc tgcgaataaa aaatacttaa tagttgaggg 2220 aggaaaggca atgctaaaat caacgaagtt gtattttctt agcaatgacg aacatagttt 2280 tataatgcct ctagagtcat gtcgtaatca aatcaaacaa acgcaaatgg acggcacaga 2340 atttatgaag taaaatctat tgtgtgtatg caactttagt gacttatggc ttctatatat 2400 tttctagaat ttgagaaacc ataaatggag aacaatttat gagaagtctg caatatatgg 2460 attttgctca aaaaatggga gcccattccg acaagcccaa ttgtaattgt gcacttcttt 2520 tttaaaacga catcgtttta aagttgcaaa tgttagtgtg tatagagaga agtcagagtt 2580 tctctctcta aaatccatcc ggtgtctctc aacttcttgt attatattgg tgtctggggt 2640 cctatatata cttaaaaccc taaatggcat aaatgtaaat ttacagagaa ctactaaggg 2700 gcctttcgta tataatatt 2719 //