ID FJ654659; SV 1; linear; genomic RNA; STD; VRL; 6422 BP. XX AC FJ654659; XX DT 08-MAR-2009 (Rel. 100, Created) DT 08-MAR-2009 (Rel. 100, Last updated, Version 1) XX DE Cucumber green mottle mosaic virus isolate BG, complete genome. XX KW . XX OS Cucumber green mottle mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6422 RA Deng T.-C., Tsai C.-H., Liao J.-Y., Cheng Y.-H.; RT "A case study of seed health testing for Cucumber green mottle mosaic virus RT in bottle gourd (Lagenaria siceraria L.)"; RL Unpublished. XX RN [2] RP 1-6422 RA Deng T.-C., Tsai C.-H., Liao J.-Y., Cheng Y.-H.; RT ; RL Submitted (22-JAN-2009) to the INSDC. RL Plant Pathology, Agricultural Research Institute, 189 Chung-Cheng Road, RL Taichung 41301, Taiwan XX DR MD5; d7875f0e773b4b1a50cc08f4708b4308. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6422 FT /organism="Cucumber green mottle mosaic virus" FT /host="Lagenaria siceraria L." FT /isolate="BG" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /collection_date="May-2006" FT /db_xref="taxon:12235" FT CDS 60..5006 FT /codon_start=1 FT /transl_except=(pos:3492..3494,aa:OTHER) FT /product="RNA replicase" FT /note="186K protein readthrough product" FT /db_xref="GOA:C0L2T4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:C0L2T4" FT /protein_id="ACN49135.1" FT /translation="MANINEQINNQRDAAASGRNNLVSQLASKRVYDEAVRSLDHQDRR FT PKMNFSRVVSTEHTRLVTDAYPEFSISFTATKNSVHSLAGGLRLLELEYMMMQVPYGSP FT CYDIGGNYTQHLFKGRSYVHCCNPCLDLKDVARNVMYNDMITQHVQRHKGSGGCRPLPS FT FQIDAFRRYDSSPCAVTCSDVFQECSYDFGSGRDNHAVSLHSIYDIPYSSIGPALHRKN FT VRVCYAAFHFSEALLLGSPVGNLNSIGAQFRVDGDDVHFLFSEESTLHYTHSLENIKLI FT VMRTYFPADDRFVYIKEFMVKRVDTFFFRLVRADTHMLHKSVGHYSKSKSEYFALNTPP FT IFQDKATFSVWFPEAKRKVLIPKFELSRFLSGNVKISRMLVDADFVHTIINHISTYDNK FT ALVWKNVQSFVESIRSRVIVNGVSVKSEWNVPVDQLTDISFSIFLLVKVRKVQIELMSD FT KVVIEARGLLRRFADSLKSAVEGLGDCVYDALVQTGWFDTSSDELKVLLPEPFMTFSDY FT LEGMYEADAKIERESVSELLASGDDLFKKIDEIRNNYSGVEFDVEKFQEFCKELNVNPM FT LIGHVIEAIFSQKAGVTVTGLGTLSPEMGASVALSSTSVDTCEDMDVTEDMEDIVLMAD FT KSHSYMSPEMARWADVKYGNNKGALVEYKVGTSMTLPATWAEKGKAVLPLSGICVRKPQ FT FSKPLDEEDDLRLSNMNFFKVSDLKLKKTITPVVYTGTIRERQMKNYIDYLSASLGSTL FT GNLERIVRSDWSGTEESMQTFGLYDCEKCKWLLLPAEKKHAWAVVLASDDTTRIIFLSY FT DESGSPIIDKKNWKRFAVCSETKVYSVIRSLGVLNKEAIVDPGVHITLVDGVPGCGKTA FT EIIARVNWKTDLVLTPGREAAAMIRRRACALHKSPVATSDNVRTFDSFVMNRKIFKFDA FT VYVDEGLMVHTGLLNFALKISGCKKAFVFGDAEQIPFINRVMNFDYPKELRTLIVDNVE FT RRYVTHRCPRDVTSFLNTIYKAAVATTSPVVHSVKAIKVSGAGILRPELTKIKGKIITF FT TQSDKQSLIKSGYNDVNTVHEIQGETFEETAVVRATPTPIGLIARDSPHVLVALTRHTK FT AMVYYTVVFDAVTSIIADVEKVDQSILTMFATTVPTKXQLMQNSLYVHRNIFLPVSKTG FT FYTDMQEFYDRCLPGNSFVLNDFDAVTMRLRDNEFNLQPCRLTLSNLDPVPALIKNEAQ FT NFLIPVLRTACERPRIPGLLENLVAMIKRNINTPDLAGTVDITNMSISIVDNFFSSFVR FT DEVLLDHLDCVRASSIQSFSDWFSCQPTSAVGQLANFNFIDLPAFDTYMHMIKRQPKSR FT LDTSIQSEYPALQTIVYHPKVVNAVFGPVFKYLTTKFLSMVDSSKFFFYTRKKPEDLQE FT FFSDLSSHSDYEILELDVSKYDKSQSDFHFSIEMAIWEKLGLDDILAWMWSMGHKRTIL FT QDFQAGIKTLIYYQRKSGDVTTFIGNTFIIAACVASMLPLDKCFKASFCGDDSLIYLPK FT GLEYPDIQATANLVWNFEAKLFRKKYGYFCGKYIIHHANGCIVYPDPLKLISKLGNKSL FT VGYEHVEEFRISLLDVAHSLFNGAYFHLLDDAIHELFPNAGGCSFVINCLCKYLSDKRL FT FRSLYIDVSK" FT CDS 60..3494 FT /codon_start=1 FT /product="RNA replicase" FT /note="129K protein" FT /db_xref="GOA:C0L2T5" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:C0L2T5" FT /protein_id="ACN49136.1" FT /translation="MANINEQINNQRDAAASGRNNLVSQLASKRVYDEAVRSLDHQDRR FT PKMNFSRVVSTEHTRLVTDAYPEFSISFTATKNSVHSLAGGLRLLELEYMMMQVPYGSP FT CYDIGGNYTQHLFKGRSYVHCCNPCLDLKDVARNVMYNDMITQHVQRHKGSGGCRPLPS FT FQIDAFRRYDSSPCAVTCSDVFQECSYDFGSGRDNHAVSLHSIYDIPYSSIGPALHRKN FT VRVCYAAFHFSEALLLGSPVGNLNSIGAQFRVDGDDVHFLFSEESTLHYTHSLENIKLI FT VMRTYFPADDRFVYIKEFMVKRVDTFFFRLVRADTHMLHKSVGHYSKSKSEYFALNTPP FT IFQDKATFSVWFPEAKRKVLIPKFELSRFLSGNVKISRMLVDADFVHTIINHISTYDNK FT ALVWKNVQSFVESIRSRVIVNGVSVKSEWNVPVDQLTDISFSIFLLVKVRKVQIELMSD FT KVVIEARGLLRRFADSLKSAVEGLGDCVYDALVQTGWFDTSSDELKVLLPEPFMTFSDY FT LEGMYEADAKIERESVSELLASGDDLFKKIDEIRNNYSGVEFDVEKFQEFCKELNVNPM FT LIGHVIEAIFSQKAGVTVTGLGTLSPEMGASVALSSTSVDTCEDMDVTEDMEDIVLMAD FT KSHSYMSPEMARWADVKYGNNKGALVEYKVGTSMTLPATWAEKGKAVLPLSGICVRKPQ FT FSKPLDEEDDLRLSNMNFFKVSDLKLKKTITPVVYTGTIRERQMKNYIDYLSASLGSTL FT GNLERIVRSDWSGTEESMQTFGLYDCEKCKWLLLPAEKKHAWAVVLASDDTTRIIFLSY FT DESGSPIIDKKNWKRFAVCSETKVYSVIRSLGVLNKEAIVDPGVHITLVDGVPGCGKTA FT EIIARVNWKTDLVLTPGREAAAMIRRRACALHKSPVATSDNVRTFDSFVMNRKIFKFDA FT VYVDEGLMVHTGLLNFALKISGCKKAFVFGDAEQIPFINRVMNFDYPKELRTLIVDNVE FT RRYVTHRCPRDVTSFLNTIYKAAVATTSPVVHSVKAIKVSGAGILRPELTKIKGKIITF FT TQSDKQSLIKSGYNDVNTVHEIQGETFEETAVVRATPTPIGLIARDSPHVLVALTRHTK FT AMVYYTVVFDAVTSIIADVEKVDQSILTMFATTVPTK" FT CDS 4993..5787 FT /codon_start=1 FT /product="movement protein" FT /note="29K protein" FT /db_xref="GOA:C0L2T6" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:C0L2T6" FT /protein_id="ACN49137.1" FT /translation="MSLSKVSVENSLKPEKFVKISWVDKLLPNYFSILKYLSITDFSVV FT KAQSYESLVPVKLLRGVDLTKHLYVTLLGVVVSGVWNVPESCRGGATVALVDTRMHSVA FT EGTICKFSAPATVREFSVRFIPNYSVVAADALRDPWSLFVRLSNVGIKDGFHPLTLEVA FT CLVATTNSIIKKGLRASXVESVVSSDQSIVLDSLSEEVEPFFDKVPISAAVMARDPSYR FT SRSQSVGGRSKRHSKPPNRRLDSASEESSSVSFEDGLQSDHT" FT CDS 5762..6247 FT /codon_start=1 FT /product="coat protein" FT /note="17.4K protein" FT /db_xref="GOA:Q77G05" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q77G05" FT /protein_id="ACN49138.1" FT /translation="MAYNPITPSKLIAFSASYVPVRTLLNFLVASQGTAFQTQAGRDSF FT RESLSALPSSVVDINSRFPDAGFYAFLNGPVLRPIFVSLLSSTDTRNRVIEVVDPSNPT FT TAESLNAVKRTDDASTAARAEIDNLIESISKGFDVYDRASFEAAFSVVWSEATTSKA" XX SQ Sequence 6422 BP; 1650 A; 1249 C; 1526 G; 1996 T; 1 other; gttttaattt ttataattaa acaaacaaca acaacaacaa caaacaattt aaaacaacaa 60 tggcaaacat taacgaacaa atcaacaacc aacgtgacgc cgcggctagc gggagaaaca 120 atctcgttag ccaattggcg tcaaaaaggg tgtatgacga ggctgttcgc tcgttggatc 180 atcaagacag acgcccgaaa atgaactttt ctcgtgtggt cagcacagag cacaccaggc 240 ttgtaactga tgcgtatccg gagttttcga ttagctttac cgccaccaag aactctgtac 300 actcccttgc gggtggtctg aggcttcttg aattggaata tatgatgatg caagtgccct 360 acggctcacc ttgttatgac atcggcggta attatacgca gcacttgttc aaaggtagat 420 catatgtgca ttgctgcaat ccgtgcctag atcttaaaga tgttgcgagg aatgtgatgt 480 acaacgatat gatcacgcaa catgtacaga ggcacaaggg atctggcggg tgcagacctc 540 ttccatcttt ccagatagat gcattcagga ggtacgatag ttctccctgt gcggtcacct 600 gttcagacgt tttccaagag tgttcctatg attttgggag tggtagggat aatcatgcag 660 tctcgttgca ttcaatctac gatatccctt attcttcgat cggacctgct cttcatagga 720 agaatgtgcg agtttgttat gcagcctttc atttctcgga ggcattgctt ttaggttcgc 780 ctgtaggtaa tttaaatagt attggggctc aatttagagt cgatggtgat gatgtgcatt 840 ttctttttag tgaagagtct actttgcatt acactcatag tttagaaaat atcaagttaa 900 tcgtgatgcg tacttacttt cctgctgatg ataggtttgt atatattaag gagttcatgg 960 ttaagcgtgt ggatactttt ttctttaggt tggtcagagc agacacacac atgcttcata 1020 aatctgtggg gcactattcg aaatcgaagt ctgagtactt cgcgctgaat acccctccga 1080 tcttccaaga taaagccacg ttttctgtgt ggtttcctga agcgaagcgc aaggtgttga 1140 tacccaagtt tgaactttcg agattccttt ctgggaatgt gaaaatctct aggatgcttg 1200 tcgatgctga tttcgtccat accattatta atcacattag cacgtatgat aacaaggcct 1260 tagtgtggaa gaatgttcag tcctttgtgg aatccatacg ctcaagagta attgtaaacg 1320 gagtttccgt gaaatctgag tggaacgtac cggttgatca gctcactgat atctcgttct 1380 cgatattcct tctcgtgaag gttaggaagg tacagatcga gttaatgtct gataaagttg 1440 taatcgaggc gaggggtttg cttcggaggt tcgcagacag tcttaaatct gccgtagaag 1500 gactaggtga ttgcgtctat gatgctctag ttcaaaccgg ctggtttgac acctctagcg 1560 acgaactgaa agtattgcta cctgaaccgt ttatgacctt ttcggattat cttgaaggga 1620 tgtacgaggc agacgcaaag atcgagagag agagtgtctc tgagttgctc gcttccggtg 1680 acgatttgtt caagaaaatc gatgagataa gaaacaatta cagtggagtc gaatttgatg 1740 tagagaaatt ccaagaattt tgcaaggaac tgaatgttaa tcctatgcta attggccatg 1800 ttatcgaagc tattttttcg cagaaggctg gggtaacagt aacgggtctg ggcacgctct 1860 ctcctgagat gggcgcttct gttgcgttat ccagtacctc tgtagataca tgtgaagata 1920 tggatgtgac tgaagatatg gaggatatag tgttgatggc ggacaagagt cattcttaca 1980 tgtcccctga aatggcgaga tgggctgatg ttaaatatgg caacaataaa ggggctctag 2040 tcgagtacaa agtcggaact tcgatgactt tacctgccac ctgggcagag aaaggtaagg 2100 ctgtcttacc gttgtcgggg atctgtgtga ggaaacccca attttcgaag ccgcttgatg 2160 aggaagatga cttgaggtta tcaaacatga atttctttaa ggtaagcgat ctaaagttga 2220 agaagactat cactccagtc gtttacactg ggaccattcg agagaggcaa atgaagaatt 2280 atatcgatta cttatcagcc tctcttggtt ccacgctggg taatctggag agaatcgtgc 2340 ggagtgattg gagtggtact gaggagagta tgcaaacgtt cgggttgtat gactgcgaaa 2400 agtgcaagtg gttattgttg cccgccgaga agaagcacgc atgggccgtg gtcctagcaa 2460 gtgatgatac cactcgcata atcttccttt catatgacga atctggttct cctataattg 2520 ataagaaaaa ctggaagcga tttgctgtct gttccgagac caaagtctat agcgtaattc 2580 gtagtttagg ggttttaaat aaggaagcaa tagtcgaccc cggggttcac ataacattag 2640 ttgacggagt gccgggttgt ggaaagaccg ccgagattat agctagggtc aattggaaaa 2700 ctgatctagt attgactccc gggagggagg cggctgctat gattaggcgg agagcgtgcg 2760 ccctgcacaa gtcacctgtg gcaactagtg acaacgtcag aactttcgat tcttttgtga 2820 tgaataggaa aatcttcaag tttgacgctg tctatgttga cgagggtctg atggtccata 2880 cgggattact taattttgcg ttaaagatct caggttgtaa aaaagccttc gtctttggtg 2940 atgctgagca aatcccgttt ataaacagag tcatgaattt tgattatcct aaggagttaa 3000 gaactttaat agtcgataat gtagagcgta ggtatgtcac ccataggtgt cctagagatg 3060 tcactagttt tcttaatact atctataaag ccgctgtcgc tactactagt ccggttgtac 3120 attctgtgaa ggcaattaaa gtgtcagggg ccggtattct gaggcctgag ttgacaaaga 3180 tcaaaggaaa gataataacg tttactcaat ctgataagca gtccttgatc aagagtgggt 3240 acaatgatgt gaatactgtg catgaaattc agggagaaac ctttgaggag acggcagttg 3300 tgcgtgccac tccgactcca ataggtttga ttgcccgtga ttcaccacat gtactagtgg 3360 ccttaactag gcacactaag gcaatggtgt attatactgt tgtattcgat gcagttacaa 3420 gtataatagc ggatgtggaa aaggtcgatc agtcgatctt gaccatgttt gctaccactg 3480 tgcctaccaa atagcaatta atgcagaact cgctgtatgt ccatcgtaat attttcctcc 3540 ctgttagtaa aacggggttt tatacagaca tgcaggagtt ctacgataga tgccttcctg 3600 ggaattcctt cgtactgaat gatttcgatg ccgtaaccat gcggttgagg gacaacgaat 3660 ttaacttaca accttgtagg ctaaccttga gtaatttaga tccggtaccc gctttgatta 3720 agaatgaagc gcagaatttt ctgatccccg ttttgcgtac ggcctgtgaa aggccgcgca 3780 ttcctggtct tcttgagaat cttgtagcta tgataaagag gaacataaat actcctgatt 3840 tagctgggac cgtagatata actaacatgt cgatttctat agtagataac ttcttttctt 3900 cttttgttag ggacgaggtt ttgcttgatc acttagattg tgttagggct agttccattc 3960 aaagtttttc tgattggttt tcgtgtcagc caacctcagc ggtcggccag ttagctaatt 4020 tcaatttcat agatttgcct gcctttgata cttatatgca tatgattaag aggcaaccca 4080 agagtcggtt agatacttcg attcagtctg aatatccggc cttgcaaact attgtttatc 4140 accctaaagt ggtaaatgca gtttttggtc cggttttcaa gtatttgacc accaagtttc 4200 ttagtatggt agatagttct aagtttttct tttacactag gaaaaaacca gaggatctgc 4260 aggaattttt ctcagatctc tcttcccatt ctgattatga gattcttgag cttgatgttt 4320 ctaaatacga caagtcgcaa tccgatttcc atttctctat tgagatggca atttgggaaa 4380 aattggggct ggacgatatt ttggcttgga tgtggtctat gggtcacaaa agaactatac 4440 tgcaagattt ccaagccggg ataaagacgc tcatttacta tcaacggaag tctggtgatg 4500 taactacttt tataggtaat acctttatta tcgcagcgtg tgtagcaagt atgttgccgt 4560 tagataagtg ttttaaagct agtttttgtg gtgatgattc gctgatctac cttcctaagg 4620 gcttggagta tcctgatata caggctactg ccaaccttgt ttggaatttt gaggcgaaac 4680 ttttccgaaa gaagtatggt tatttctgcg ggaagtatat aattcaccat gccaacggtt 4740 gtattgttta ccctgaccct ttaaaattaa ttagtaaatt aggtaataag agtcttgtag 4800 ggtacgagca tgttgaggag tttcgtatat ctctcctcga cgttgctcat agtttgttta 4860 atggtgctta tttccattta ctcgacgatg caatccacga attatttcct aatgctgggg 4920 gttgcagttt tgtaattaat tgtttgtgta agtatttgag tgataagcgc cttttccgta 4980 gtctttacat agatgtctct aagtaaggtg tcagtcgaga actcgttgaa acctgagaag 5040 tttgtcaaaa tctcttgggt cgataagtta ctccctaact acttttccat tcttaagtat 5100 ttatctataa ctgactttag tgtggttaaa gctcagagct atgaatccct cgtgcctgtc 5160 aagttgttgc gtggtgttga tcttacaaaa cacctttatg tcacattgtt gggcgttgtg 5220 gtttctggtg tatggaacgt accggaatcc tgtaggggtg gtgctactgt tgctctggtt 5280 gacacaagga tgcattctgt tgcagaggga actatatgca aattttcagc tcccgccacc 5340 gtccgcgaat tctctgttag gttcatacct aattattctg tcgtggctgc ggatgccctt 5400 cgcgatcctt ggtctttatt tgtgagactc tctaatgtgg gtattaaaga tggtttccat 5460 cctttgactt tagaggtcgc ttgtttagtc gctacaacta actctattat caaaaagggt 5520 cttagagctt ctntagtcga gtctgtcgtc tcttccgatc agtctattgt cctagattct 5580 ttatccgagg aagttgaacc tttctttgac aaagttccta tttcagcggc tgtaatggca 5640 agagatccca gttataggtc taggtcgcag tccgtcggtg gtcgtagtaa gcggcattct 5700 aaacctccaa atcggaggtt ggactctgct tctgaagagt ccagttctgt ttcttttgaa 5760 gatggcttac aatccgatca cacctagcaa acttattgca tttagtgctt cttatgttcc 5820 cgtcaggact ttacttaatt ttctagttgc ttcacaaggt accgctttcc agactcaagc 5880 gggaagagat tctttccgcg agtccctgtc tgcgttaccc tcgtctgtcg tagatattaa 5940 ttctagattc ccagatgcgg gtttttacgc tttcctcaac ggtcctgtgt tgaggcctat 6000 cttcgtttcg cttctcagct ccacggatac gcgtaatagg gtcattgagg ttgtagatcc 6060 tagcaatcct acgactgctg agtcgcttaa cgctgtaaag cgtactgatg acgcgtctac 6120 agccgctagg gctgagatag ataatctaat agagtctatt tctaagggtt ttgatgttta 6180 cgatagggct tcatttgaag ccgcgttttc ggtagtctgg tcagaggcta ccacctcgaa 6240 agcttagttt cgagggtctt ctgatggtgg tgcacaccaa agtgcatagt gctttcccgt 6300 tcacttaaat cgaacggttt gctcattggt ttgcggaaac ctctcacgtg tgacgttgaa 6360 gtttctatgg gcagtaattc tgcaaggggt tcgaatcccc cctttccccg ggtaggggcc 6420 ca 6422 //