ID FJ654657; SV 1; linear; genomic RNA; STD; VRL; 6422 BP. XX AC FJ654657; XX DT 08-MAR-2009 (Rel. 100, Created) DT 08-MAR-2009 (Rel. 100, Last updated, Version 1) XX DE Cucumber green mottle mosaic virus isolate BG-SB, complete genome. XX KW . XX OS Cucumber green mottle mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6422 RA Deng T.-C., Tsai C.-H., Liao J.-Y., Cheng Y.-H.; RT "A case study of seed health testing for Cucumber green mottle mosaic virus RT in bottle gourd (Lagenaria siceraria L.)"; RL Unpublished. XX RN [2] RP 1-6422 RA Cheng Y.-H., Tsai C.-H., Liao J.-Y., Deng T.-C.; RT ; RL Submitted (22-JAN-2009) to the INSDC. RL Plant Pathology, Agricultural Research Institute, 189 Chung-Cheng Road, RL Taichung 41301, Taiwan XX DR MD5; 7c812e6de75b048e544fb343ec1ec65c. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6422 FT /organism="Cucumber green mottle mosaic virus" FT /host="Lagenaria siceraria L." FT /isolate="BG-SB" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /collection_date="Feb-2008" FT /db_xref="taxon:12235" FT CDS 60..5006 FT /codon_start=1 FT /transl_except=(pos:3492..3494,aa:OTHER) FT /product="RNA replicase" FT /note="186K protein readthrough product" FT /db_xref="GOA:C0L2S6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:C0L2S6" FT /protein_id="ACN49127.1" FT /translation="MANINEQINNQRDAAASGRNNLVSQLASKRVYDEAVRSLDHQDRR FT PKMNFSRVVSTEHTRLVTDAYPEFSISFTATKNSVHSLAGGLRLLELEYMMMQVPYGSP FT CYDIGGNYTQHLFKGRSYVHCCNPCLDLKDVARNVMYNDMVTQHVQRHKGSGGCRPLPT FT FQIDAFRRYDNSPCAVTCSDVFQECSYDFGSGRDNHAVSLHSIYDIPYSSIGPALHRKN FT VRVCYAAFHFSEALLLGSPVGNLNSIGAQFRVDGDDVHFLFSEESTLHYTHSLENIKLI FT VMRTYFPADDRFVYIKEFMVKRVDTFFFRLVRADTHMLHKSVGHYSKSKSEYFALNTPP FT IFQDKATFSVWFPEAKRKVLIPKFELSRFLSGNVKISRMLVDADFVHTIINHISTYDNK FT ALVWKNVQSFVESIRSRVIVNGVSVKSEWNVPVDQLTDISFSIFLLVKVRKVQIELMSD FT KVVIEARGLLRRFADSLKSAVEGLGDCVYDALVQTGWFDTSSDELKVLLPEPFMTFSDY FT LEGMYEADAKIERESVSELLASGDDLFKKIDEIRNNYSGVEFDVEKFQEFCKELNVNPM FT LIGHVIEAIFSQKAGVTVTGLGTLSPEMGASVALSNTSVDTCEDMDVTEDMEDIVLMAD FT KSHSYMSPEMARWADVKYGNNKGALVEYKVGTSMTLPATWAEKGKAVLPLSGICVRKPQ FT FSKPLDEEDDLRLSNMNFFKVSDLKLKKTITPVVYTGTIRERQMKNYIDYLSASLGSTL FT GNLERIVRSDWNGIEESMQTFGLYDCEKCKWLLLPAEKKHAWAVVLASDDTTRIIFLSY FT DESGSPIIDKKNWKRFAVCSETKVYSVIRSLEVLNKEAIVDPGVHITLVDGVPGCGKTA FT EIIARVNWKTDLVLTPGREAAAMIRRRACALHKSPVATTDNVRTFDSFVMNRKIFKFDA FT VYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYPKELRTLIVDNVE FT RRYVTHRCPRDVTSFLNTIYKAAVATTSPVVHSVKAIKVSGAGILRPELTKIKGKIITF FT TQSDKQSLIKSGYNDVNTVHEIQGETFEETAVVRATPTPIGLIARDSPHVLVALTRHTK FT AMVYYTVVFDAVTSIIADVEKVDQSILTMFATTVSTKXQLMQNSLYVHRNIFLPVSKTG FT FYTDMQEFYDRCLPGNSFVLNDFDAVTMRLRDNEFNLQPCRLTLSNLDPVPALVKSEAQ FT NFLIPVLRTACERPRIPGLLENLVAMIKRNMNTPDLAGTVDITNMSISIVDNFFSSFVR FT DEVLLDHLDCVRASSIQSFSDWFSCQPTSAVGQLANFNFIDLPAFDTYMHMIKRQPKSR FT LDTSIQSEYPALQTIVYHPKVVNAVFGPVFKYLTTKFLSMVDSSKFFFYTRKKPEDLXE FT FFSDLSSHSDYEILELDVSKYDKSQSDFHFSIEMAIWEKLGLDDILAWMWSMGHKRTIL FT QDFQAGIKTLIYYQRKSGDVTTFIGNTFIIAACVASMLPLDKCFKASFCGDDSLIYLPK FT GLEYPDIQATANLVWNFEAKLFRKKYGYFCGKYIIHHANGCIVYPDPLKLISKLGNKSL FT VGYEHVEEFRISLLDVAHSLFNGAYFHLLDDAIHELFPNAGGCSFVINCLCKYLSDKRL FT FRSLYIDVSK" FT CDS 60..3494 FT /codon_start=1 FT /product="RNA replicase" FT /note="129K protein" FT /db_xref="GOA:C0L2S7" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:C0L2S7" FT /protein_id="ACN49128.1" FT /translation="MANINEQINNQRDAAASGRNNLVSQLASKRVYDEAVRSLDHQDRR FT PKMNFSRVVSTEHTRLVTDAYPEFSISFTATKNSVHSLAGGLRLLELEYMMMQVPYGSP FT CYDIGGNYTQHLFKGRSYVHCCNPCLDLKDVARNVMYNDMVTQHVQRHKGSGGCRPLPT FT FQIDAFRRYDNSPCAVTCSDVFQECSYDFGSGRDNHAVSLHSIYDIPYSSIGPALHRKN FT VRVCYAAFHFSEALLLGSPVGNLNSIGAQFRVDGDDVHFLFSEESTLHYTHSLENIKLI FT VMRTYFPADDRFVYIKEFMVKRVDTFFFRLVRADTHMLHKSVGHYSKSKSEYFALNTPP FT IFQDKATFSVWFPEAKRKVLIPKFELSRFLSGNVKISRMLVDADFVHTIINHISTYDNK FT ALVWKNVQSFVESIRSRVIVNGVSVKSEWNVPVDQLTDISFSIFLLVKVRKVQIELMSD FT KVVIEARGLLRRFADSLKSAVEGLGDCVYDALVQTGWFDTSSDELKVLLPEPFMTFSDY FT LEGMYEADAKIERESVSELLASGDDLFKKIDEIRNNYSGVEFDVEKFQEFCKELNVNPM FT LIGHVIEAIFSQKAGVTVTGLGTLSPEMGASVALSNTSVDTCEDMDVTEDMEDIVLMAD FT KSHSYMSPEMARWADVKYGNNKGALVEYKVGTSMTLPATWAEKGKAVLPLSGICVRKPQ FT FSKPLDEEDDLRLSNMNFFKVSDLKLKKTITPVVYTGTIRERQMKNYIDYLSASLGSTL FT GNLERIVRSDWNGIEESMQTFGLYDCEKCKWLLLPAEKKHAWAVVLASDDTTRIIFLSY FT DESGSPIIDKKNWKRFAVCSETKVYSVIRSLEVLNKEAIVDPGVHITLVDGVPGCGKTA FT EIIARVNWKTDLVLTPGREAAAMIRRRACALHKSPVATTDNVRTFDSFVMNRKIFKFDA FT VYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYPKELRTLIVDNVE FT RRYVTHRCPRDVTSFLNTIYKAAVATTSPVVHSVKAIKVSGAGILRPELTKIKGKIITF FT TQSDKQSLIKSGYNDVNTVHEIQGETFEETAVVRATPTPIGLIARDSPHVLVALTRHTK FT AMVYYTVVFDAVTSIIADVEKVDQSILTMFATTVSTK" FT CDS 4993..5787 FT /codon_start=1 FT /product="movement protein" FT /note="29K protein" FT /db_xref="GOA:C0L2S8" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:C0L2S8" FT /protein_id="ACN49129.1" FT /translation="MSLSKVSVENSLKPEKFVKISWVDKLLPNYFSILKYLSITDFSVV FT KAQSYESLVPVKLLRGVDLTKHLYVTLLGVVVSGVWNVPESCRGGATVALVDTRMHSVA FT EGTICKFSAPATVREFSVRFIPNYSVVAADALRDPWSLFVRLSNVGIKDGFHPLTLEVA FT CLVATTNSIIKKGLRASVVESVVSSDQSIVLDSLSEKVEPFFDKVPISAAVMARDPSYR FT SRSQSVGGRGKRHSKPPNRRLDSASEESGSVSFDDGLQSDHT" FT CDS 5762..6247 FT /codon_start=1 FT /product="coat protein" FT /note="17.4K protein" FT /db_xref="GOA:Q77G05" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q77G05" FT /protein_id="ACN49130.1" FT /translation="MAYNPITPSKLIAFSASYVPVRTLLNFLVASQGTAFQTQAGRDSF FT RESLSALPSSVVDINSRFPDAGFYAFLNGPVLRPIFVSLLSSTDTRNRVIEVVDPSNPT FT TAESLNAVKRTDDASTAARAEIDNLIESISKGFDVYDRASFEAAFSVVWSEATTSKA" XX SQ Sequence 6422 BP; 1653 A; 1250 C; 1531 G; 1986 T; 2 other; gttttaattt ttataattaa acaaacaaca acaacaacaa caaacatttt aaaacaacaa 60 tggcaaacat taatgaacaa atcaacaacc aacgcgacgc cgcggccagc gggagaaaca 120 atctcgttag ccaattggcg tcaaaaaggg tgtatgacga ggctgttcgc tcgttggatc 180 atcaagacag acgcccaaaa atgaactttt ctcgtgtggt cagcacagag cacaccaggc 240 ttgtaaccga tgcgtatccg gagttttcga ttagctttac cgccaccaag aactctgtac 300 actcccttgc gggtggtctg aggctccttg aattggaata tatgatgatg caagtgccct 360 acggctcacc ttgttatgac atcggcggta actatacgca gcacttgttt aaaggtagat 420 catatgtgca ttgctgcaat ccgtgcctgg atcttaaaga tgttgcgagg aatgtgatgt 480 acaacgatat ggtcacacaa catgtacaga ggcacaaggg atctggcggg tgcagacctc 540 ttccaacttt ccagatagat gcattcagga ggtatgataa ttctccctgt gcagtcacct 600 gttcagacgt ttttcaagag tgttcctatg attttgggag tggtagggat aatcacgcag 660 tctcgttgca ttcaatctac gatatccctt attcttcgat cggacctgct cttcatagga 720 agaacgtgcg agtttgttac gcagcctttc acttttcgga ggcattgctt ttaggttcgc 780 ctgtaggtaa tttaaatagt attggggctc agtttagggt cgatggtgat gatgtgcatt 840 ttctttttag tgaagagtct actctgcatt atactcatag tttagaaaat attaagttaa 900 tcgtgatgcg tacttacttt cctgctgatg ataggttcgt gtatattaag gagtttatgg 960 ttaagcgtgt ggatactttt ttctttaggt tggtcagagc agatacacat atgcttcata 1020 aatctgtggg gcactactcg aaatcgaaat ccgagtactt tgcgctgaat acccctccga 1080 tcttccaaga caaagccacg ttttctgtgt ggtttcctga agcgaagcgc aaggtgttga 1140 tacccaagtt cgaactttca agattccttt ctgggaatgt gaaaatctct aggatgcttg 1200 tcgatgctga tttcgtccat accattatta atcacattag cacatatgat aacaaggcgt 1260 tagtgtggaa gaatgttcag tcctttgtgg aatccatacg ctcaagagta attgtaaacg 1320 gagtttcggt gaaatctgaa tggaacgtac cggttgatca gctcactgat atctcgttct 1380 cgatattcct tctcgtgaag gttaggaagg tacagattga gttaatgtct gataaagttg 1440 taatcgaggc gaggggcttg cttcggaggt tcgcagacag tcttaaatcc gccgtagaag 1500 gactaggtga ttgcgtctat gatgctctag ttcaaaccgg ctggtttgac acctctagcg 1560 acgaactgaa agtattgcta cctgaaccgt ttatgacctt ttcggattat cttgaaggga 1620 tgtacgaggc agatgcaaag atcgagagag agagtgtctc tgagttgctc gcttccggtg 1680 acgatttgtt caagaaaatc gatgagataa gaaacaatta cagtggagtc gaatttgacg 1740 tggagaaatt ccaggaattt tgcaaggagc tgaatgttaa tcctatgctg attggccatg 1800 ttattgaagc tattttttcg cagaaagctg gggtaacagt gacgggtctg ggtactctct 1860 ctcctgagat gggtgcttct gttgcgttat ccaacacctc tgtagataca tgtgaagata 1920 tggatgtaac tgaagatatg gaggatatag tgttgatggc ggacaagagt cattcttaca 1980 tgtcccctga aatggcgaga tgggctgatg tgaaatacgg caacaataaa ggggccctgg 2040 tcgaatacaa agtcggaacc tcgatgactt tacctgccac ctgggcagag aagggtaagg 2100 ctgtcttacc gttgtcgggg atctgtgtga ggaaacccca attttcgaag ccgcttgatg 2160 aggaagacga cttgaggtta tcaaacatga atttctttaa agtgagcgat ctgaagttga 2220 agaaaactat cactccagtt gtttacactg ggaccattcg agagaggcaa atgaagaatt 2280 atattgatta cttatcggcc tctcttggtt ctacgctggg taatctggag agaattgtgc 2340 ggagtgattg gaacggtatt gaggagagta tgcaaacgtt cgggttgtat gattgcgaaa 2400 agtgcaagtg gctattgtta ccagccgaaa agaagcacgc atgggctgtg gttctggcaa 2460 gtgatgatac cactcgcata atcttcctct catatgacga atctggttct cctataattg 2520 ataagaaaaa ctggaagcga tttgctgttt gctctgagac caaagtctat agcgtaattc 2580 gtagtttaga ggtactaaat aaggaagcga tagtcgaccc cggggttcat ataacattag 2640 ttgacggagt gccgggttgt ggaaagaccg ccgaaattat agcgagggtc aattggaaaa 2700 ctgatctagt actgactcct gggagggagg cggctgctat gattaggcgg agagcgtgcg 2760 ccctgcacaa gtcacctgtg gcaaccactg acaacgttag aactttcgat tcttttgtga 2820 tgaataggaa aatattcaag tttgacgctg tctatgttga cgagggtctg atggtccata 2880 cgggattact taattttgcg ttaaagatct caggttgcaa aaaagccttc gtctttggtg 2940 atgctaagca aatcccgttt ataaacagag tcatgaattt tgattatcct aaggagttaa 3000 gaactttaat agtcgacaat gtagagcgta ggtatgttac ccataggtgt cctagagatg 3060 tcactagttt tcttaatact atttacaaag ccgctgtcgc tactactagt ccggttgtac 3120 attctgtgaa ggcaattaaa gtgtcagggg ccggtattct gaggcccgag ttgacaaaga 3180 tcaaaggaaa gataataacg tttactcaat ctgataagca gtccttgatc aagagtgggt 3240 acaatgatgt gaatactgtg cacgaaattc agggagaaac ctttgaagag acggcggttg 3300 tgcgtgccac cccgactccg ataggtttaa ttgcccgtga ttcaccacat gtactagtgg 3360 ccttaacgag gcacaccaag gcaatggtgt attacactgt tgtgttcgat gcagttacaa 3420 gtataatagc ggatgtggaa aaggtcgatc agtcgatctt gaccatgttt gctaccactg 3480 tgtctaccaa atagcaatta atgcagaact cgctgtatgt ccatcgtaat attttcctcc 3540 ctgttagtaa aacggggttt tatacagaca tgcaggagtt ctatgacaga tgcctccctg 3600 ggaattcctt cgtgctaaat gatttcgacg ccgtaaccat gcggttgagg gacaacgaat 3660 ttaacctaca accttgtagg ctaaccttaa gtaatttaga tccggtaccc gctttggtta 3720 agagtgaagc gcagaatttt ctgatccccg ttttgcgtac ggcctgtgaa aggccgcgca 3780 ttccaggtct tcttgagaat cttgtagcta tgataaagag gaacatgaat actcctgatc 3840 tagctgggac cgtggatata actaatatgt cgatttctat agtagataac ttcttttctt 3900 cttttgttag ggacgaggtt ttgcttgatc acttagattg tgttagggct agttccattc 3960 aaagtttttc tgattggttt tcgtgtcagc caacctcggc ggttggccag ttagctaatt 4020 tcaattttat agatttgcct gcctttgaca cttatatgca tatgattaag aggcagccca 4080 agagtcggtt agatacttcg attcagtctg aatatccggc cttgcaaact attgtttatc 4140 accctaaagt ggtaaatgca gtttttggtc cggtttttaa gtatttgacc accaagtttc 4200 ttagtatggt agatagttct aagtttttct tttacactag gaaaaaacca gaagatctgc 4260 angaattttt ctcagatctc tcttcncatt ctgattatga gattcttgaa cttgatgttt 4320 ctaaatatga caagtcacaa tccgatttcc atttctctat agagatggca atttgggaaa 4380 aattggggct ggacgatatt ttggcttgga tgtggtctat gggtcataag agaactatac 4440 tgcaagattt ccaagccggg ataaagacgc tcatttacta tcaacggaag tctggtgatg 4500 taactacttt tataggtaat acctttatta tcgcagcgtg tgtagctagt atgttaccgt 4560 tagataagtg ttttaaagct agtttttgtg gtgacgattc gctgatctac cttcctaagg 4620 gcttggagta tcctgatata caggctactg ccaacctagt ttggaatttt gaggcgaaac 4680 tcttccgaaa gaagtatggt tacttctgtg ggaagtatat aattcaccat gctaacggct 4740 gtattgttta ccctgaccct ttaaaattaa ttagtaaatt aggtaataag agtcttgtag 4800 ggtatgagca tgttgaggag tttcgtatat ctctcctcga cgttgctcat agtttgttta 4860 atggtgctta tttccattta ctcgacgatg caatccacga attatttcct aatgctgggg 4920 gttgcagttt tgtaatcaat tgtttgtgta agtatttaag tgataagcgc cttttccgta 4980 gtctttatat agatgtctct aagtaaggtg tcggtcgaga actcattgaa acctgagaag 5040 tttgtcaaaa tctcttgggt cgataagttg ctccctaact atttttccat tcttaagtat 5100 ttatctataa ctgactttag tgtagttaaa gctcagagct atgaatccct cgtgcctgtc 5160 aagttgttgc gtggtgttga tcttacaaaa cacctttatg tcacattgtt gggcgttgtg 5220 gtttctggtg tatggaacgt accggaatcc tgtaggggtg gtgctactgt tgctctggtt 5280 gacacaagga tgcattctgt tgcagaggga actatatgca aattttcagc tcccgccacc 5340 gtccgcgaat tctctgttag gttcatacct aattattctg tcgtggctgc ggatgccctt 5400 cgcgatcctt ggtctttatt tgtgagactc tctaatgtag gtattaaaga tggtttccat 5460 cctttgacct tagaggtcgc ttgtttagtc gctacaacta actctattat caaaaagggt 5520 cttagagctt ctgtggtcga gtctgtcgtc tcttccgatc agtccattgt cctagattct 5580 ttatccgaga aagttgaacc tttctttgat aaagttccta tttcagcggc tgtaatggca 5640 agagacccca gttataggtc taggtcgcag tctgtcggtg gtcgtggtaa gcggcattct 5700 aaacctccaa atcggaggtt ggactctgct tctgaagagt ccggttctgt ttctttcgac 5760 gatggcttac aatccgatca cacctagcaa acttattgcg tttagtgctt cttatgttcc 5820 tgttaggacg ttacttaatt ttctagttgc ttcacaaggt accgccttcc agactcaagc 5880 gggaagagat tctttccgcg agtctctgtc tgcgttaccc tcgtctgtcg tagatattaa 5940 ttccaggttc ccagatgcgg gtttttacgc tttcctcaac ggtcctgtgt tgaggcctat 6000 cttcgtttcg cttctcagct ccacggatac gcgtaatagg gtcattgagg ttgtagatcc 6060 tagcaatcct acgactgctg agtcgcttaa cgctgtaaag cgtactgatg acgcatctac 6120 ggccgctagg gctgaaatag ataatttaat agagtctatt tctaagggtt ttgatgttta 6180 tgatagggct tcatttgaag ccgcgttttc ggtagtctgg tcagaggcta ccacctcgaa 6240 agcttagttt cgagggtctt ctgatggtgg tgcacaccaa agtgcatagt gctttcccgt 6300 tcacttaaat cgaacggttt gctcattggt ttgcggaaac ctctcacgtg tgacgttgaa 6360 gtttctatgg gcagtaattc tgcaaggggt tcgaatcccc cctttccccg ggtaggggcc 6420 ca 6422 //