ID   FJ648825; SV 1; linear; genomic RNA; STD; VRL; 1493 BP.
XX
AC   FJ648825;
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DT   03-MAR-2009 (Rel. 100, Created)
DT   27-JUL-2010 (Rel. 105, Last updated, Version 2)
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DE   Trillium crinkled leaf virus polyprotein gene, partial cds.
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KW   .
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OS   Trillium crinkled leaf virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus; unclassified Potyvirus.
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RN   [1]
RP   1-1493
RA   Monger W.A.;
RT   "A virus of Trillium plants which causes severe symptoms and plant death";
RL   Unpublished.
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RN   [2]
RP   1-1493
RA   Monger W.A.;
RT   ;
RL   Submitted (20-JAN-2009) to the INSDC.
RL   Plant Health, Central Science Laboratory, Sand Hutton, York YO41 1LZ, UK
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DR   MD5; 5afa47df43b13403f8e64355dfa1d4d1.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1493
FT                   /organism="Trillium crinkled leaf virus"
FT                   /host="Trillium viridescens"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:598671"
FT   CDS             <1..1363
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /note="VIHQ/SSD"
FT                   /db_xref="GOA:C0KZE2"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:C0KZE2"
FT                   /protein_id="ACN38306.1"
FT                   /translation="STVVDNTLMVIIAMYYSLEREGITDHHEKIKFFANGDDLIIAVRP
FT                   DFEWTLDKLAASFEELGLNYEFGSRTTDRSELSFMSHRGVPREGIYIPKLDRERIVAIL
FT                   EWDRSEEPEHRLCAIVSAMIEAWGDDELLHEIRKFYSWLLGQLPFNELARQGKAPYIAE
FT                   TALRNLYTDKMATNEELMNYVCDIATAQGEVETFVIHQSSDVGASGRQPIVPRDKDVDA
FT                   GSVGTFKVSRLKPLDRKMRFPSVGKTVIVNADHLLQYRPNQEDISNAIATKAQFATWYE
FT                   SLKADYGKSDEEMRIILDGLMVWCIENGTSPNLNGDWTMMDGDEQVSYPLKPVLDFAKP
FT                   TFRQIMGHFSDVAEAYIEIRNATEKYMPRYGRQRNITDPSLARYAFDFYVTTSRTPTRA
FT                   VEACHQMKAAALAGSKNKLFGLDGNVGATEEDTERHTVGDSSAHVHNVAGARLM"
FT   mat_peptide     <1..604
FT                   /product="NIb"
FT   mat_peptide     605..1360
FT                   /product="coat protein"
FT   3'UTR           1364..1472
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SQ   Sequence 1493 BP; 473 A; 296 C; 372 G; 352 T; 0 other;
     gtcaacagtt gtagataaca ctttgatggt cattatagca atgtactatt cacttgagag        60
     agaaggaata acagaccatc atgagaaaat aaagttcttt gcaaatggcg acgatctcat       120
     tatcgcggtg agaccagact ttgaatggac cctagacaag ctggctgcat cattcgagga       180
     gcttggcctc aactatgaat ttggcagcag aactacagac agaagcgagc tttcatttat       240
     gtcacacaga ggggtgccac gtgaagggat ttacataccg aagcttgaca gagaacggat       300
     tgtggcaatt ctagaatggg atcggagtga ggagcctgag catagattgt gtgcaattgt       360
     gtcagcaatg attgaagcat ggggcgatga cgagttgctg catgaaatca gaaagttcta       420
     tagctggctt ctagggcaac tacccttcaa cgagttggcc cgtcaaggaa aagcaccata       480
     cattgcagag acagcactcc gcaacttgta cacagacaag atggcaacaa atgaggaatt       540
     gatgaactac gtctgcgata ttgcaacagc acaaggtgag gttgaaacat ttgtgattca       600
     tcaaagcagc gatgttggtg catcagggcg ccaaccaatt gtaccacgtg acaaggatgt       660
     cgatgctggt tcagtcggaa ctttcaaagt atcccgactt aaaccactcg acagaaaaat       720
     gagatttcca agtgttggaa agactgtgat tgtcaacgcc gatcacctgt tgcaatacag       780
     accgaatcaa gaagacatct caaatgcaat tgcgacgaag gcacaattcg ccacatggta       840
     tgagagtttg aaggcggact atggaaagag tgacgaagag atgcgcatca tactagatgg       900
     tctgatggtg tggtgcattg aaaacggaac atcaccaaac ttgaatggag attggacaat       960
     gatggatggt gatgaacagg tttcatatcc cttgaaaccg gtccttgact ttgccaaacc      1020
     tacgtttcgg caaataatgg gacactttag tgatgttgcg gaggcctata ttgaaattcg      1080
     aaatgcaact gaaaaataca tgcctcgata tgggcgtcag cgcaatataa ccgacccaag      1140
     tttagcacgt tatgcttttg acttttatgt cactacatca cgtacaccaa ccagagcggt      1200
     ggaagcatgc caccaaatga aagcagcagc cctggctggt agcaagaaca aattgtttgg      1260
     acttgatggg aatgtcggtg caacggagga agatacagag aggcacacag ttggagactc      1320
     gagcgcacat gttcataatg tggccggtgc ccgtttaatg taaattagac ctgttttatg      1380
     tgttcttccg tactagctat taagcaaact tccattcgca taggacagca gtgaggcgac      1440
     ctcgagacta gcttatgcgc gtgtacaagt ttaaaaaaaa aaaaaaaaaa aaa             1493
//